RNA–Protein interactions for RNA: ENST00000537824.2

CSMD1-215, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 13,512 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-215ENST00000537824 PLEKHA4Q9H4M7 779 aa6.4□□□□□ -1.38
CSMD1-215ENST00000537824 RTL1A6NKG5 1358 aa6.4□□□□□ -1.38
CSMD1-215ENST00000537824 CARMIL2Q6F5E8 1435 aa6.4□□□□□ -1.38
CSMD1-215ENST00000537824 EFCAB2Q5VUJ9 269 aa6.4□□□□□ -1.38
CSMD1-215ENST00000537824 CCDC144CPQ8IYA2 1237 aa6.4□□□□□ -1.38
CSMD1-215ENST00000537824 TSNARE1Q96NA8 513 aa6.4□□□□□ -1.38
CSMD1-215ENST00000537824 BAG1Q99933 345 aaPredicted RBP6.4□□□□□ -1.38
CSMD1-215ENST00000537824 RUFY3Q7L099 469 aa6.4□□□□□ -1.38
CSMD1-215ENST00000537824 CACNA1BQ00975 2339 aa6.4□□□□□ -1.38
CSMD1-215ENST00000537824 DESP17661 470 aa6.4□□□□□ -1.38
CSMD1-215ENST00000537824 RNASE9P60153 205 aaKnown RBP6.4□□□□□ -1.38
CSMD1-215ENST00000537824 TIAM1Q13009 1591 aa6.4□□□□□ -1.38
CSMD1-215ENST00000537824 FYCO1Q9BQS8 1478 aa6.4□□□□□ -1.39
CSMD1-215ENST00000537824 CCDC122Q5T0U0 273 aa6.4□□□□□ -1.39
CSMD1-215ENST00000537824 GKAP1Q5VSY0 366 aaPredicted RBP6.4□□□□□ -1.39
CSMD1-215ENST00000537824 NUCKS1Q9H1E3 243 aaKnown RBP6.4□□□□□ -1.39
CSMD1-215ENST00000537824 FAF1Q9UNN5 650 aaPredicted RBP6.4□□□□□ -1.39
CSMD1-215ENST00000537824 ANKRD30BQ9BXX2 1392 aa6.4□□□□□ -1.39
CSMD1-215ENST00000537824 TMPOP42166 694 aaKnown RBP6.4□□□□□ -1.39
CSMD1-215ENST00000537824 ATP1A2P50993 1020 aa6.4□□□□□ -1.39
CSMD1-215ENST00000537824 LCA5Q86VQ0 697 aa6.4□□□□□ -1.39
CSMD1-215ENST00000537824 RAB3IPQ96QF0 476 aaPredicted RBP6.4□□□□□ -1.39
CSMD1-215ENST00000537824 CACNA1DQ01668 2161 aa6.4□□□□□ -1.39
CSMD1-215ENST00000537824 PPFIA1Q13136 1202 aa6.4□□□□□ -1.39
CSMD1-215ENST00000537824 CTAGE1Q96RT6 745 aa6.4□□□□□ -1.39
CSMD1-215ENST00000537824 PRC1O43663 620 aa6.4□□□□□ -1.39
CSMD1-215ENST00000537824 GIGYF1O75420 1035 aaPredicted RBP6.4□□□□□ -1.39
CSMD1-215ENST00000537824 SYTL4Q96C24 671 aaPredicted RBP6.4□□□□□ -1.39
CSMD1-215ENST00000537824 VPS52Q8N1B4 723 aa6.4□□□□□ -1.39
CSMD1-215ENST00000537824 GDAP1L1Q96MZ0 367 aa6.4□□□□□ -1.39
CSMD1-215ENST00000537824 PCM1Q15154 2024 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 KIF5AQ12840 1032 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 BRD3Q15059 726 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 CCDC92Q53HC0 331 aaPredicted RBP6.39□□□□□ -1.39
CSMD1-215ENST00000537824 KIAA1524Q8TCG1 905 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 KIF1BPQ96EK5 621 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 KANK3Q6NY19 840 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 A6NNZ2 444 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 AKR1B15C9JRZ8 316 aaPredicted RBP6.39□□□□□ -1.39
CSMD1-215ENST00000537824 KRT86O43790 486 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 TUBB8Q3ZCM7 444 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 TBC1D5Q92609 795 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 BOLA2Q9H3K6 86 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 CCT6AP40227 531 aaKnown RBP6.39□□□□□ -1.39
CSMD1-215ENST00000537824 RRAGBQ5VZM2 374 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 CCDC110Q8TBZ0 833 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 THUMPD2Q9BTF0 503 aaKnown RBP6.39□□□□□ -1.39
CSMD1-215ENST00000537824 CEP290O15078 2479 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 RAD50Q92878 1312 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 FYB2Q5VWT5 728 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 EFCAB13Q8IY85 973 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 MGARPQ8TDB4 240 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 EXOC1Q9NV70 894 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 TCERG1LQ5VWI1 586 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 DUSP27Q5VZP5 1158 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 GNL3LQ9NVN8 582 aaKnown RBP6.39□□□□□ -1.39
CSMD1-215ENST00000537824 RANBP1P43487 201 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 TMED1Q13445 227 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 PRR16Q569H4 304 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 ZSCAN16Q9H4T2 348 aaPredicted RBP6.39□□□□□ -1.39
CSMD1-215ENST00000537824 CBX8Q9HC52 389 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 CNNM1Q9NRU3 951 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 TNNC1P63316 161 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 SND1Q7KZF4 910 aaKnown RBP eCLIP6.39□□□□□ -1.39
CSMD1-215ENST00000537824 WHAMMQ8TF30 809 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 STAC3Q96MF2 364 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 MTRF1LQ9UGC7 380 aaKnown RBP6.39□□□□□ -1.39
CSMD1-215ENST00000537824 CHD5Q8TDI0 1954 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 TUBB2AQ13885 445 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 TUBB2BQ9BVA1 445 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 UTP14AQ9BVJ6 771 aaKnown RBP6.39□□□□□ -1.39
CSMD1-215ENST00000537824 PPANQ9NQ55 473 aaKnown RBP6.39□□□□□ -1.39
CSMD1-215ENST00000537824 PCDHB15Q9Y5E8 787 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 MARCKSP29966 332 aaPredicted RBP6.39□□□□□ -1.39
CSMD1-215ENST00000537824 MAP7D1Q3KQU3 841 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 IFT20Q8IY31 132 aa6.39□□□□□ -1.39
CSMD1-215ENST00000537824 LRRD1A4D1F6 860 aa6.38□□□□□ -1.39
CSMD1-215ENST00000537824 RASSF2P50749 326 aa6.38□□□□□ -1.39
CSMD1-215ENST00000537824 MMS22LQ6ZRQ5 1243 aa6.38□□□□□ -1.39
CSMD1-215ENST00000537824 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.38□□□□□ -1.39
CSMD1-215ENST00000537824 A0A087WZG4 1122 aa6.38□□□□□ -1.39
CSMD1-215ENST00000537824 KRT83P78385 493 aa6.38□□□□□ -1.39
CSMD1-215ENST00000537824 SPAG1Q07617 926 aa6.38□□□□□ -1.39
CSMD1-215ENST00000537824 WWC2Q6AWC2 1192 aa6.38□□□□□ -1.39
CSMD1-215ENST00000537824 ATICP31939 592 aa6.38□□□□□ -1.39
CSMD1-215ENST00000537824 CCDC63Q8NA47 563 aa6.38□□□□□ -1.39
CSMD1-215ENST00000537824 TTC16Q8NEE8 873 aa6.38□□□□□ -1.39
CSMD1-215ENST00000537824 NCOA1Q15788 1441 aa6.38□□□□□ -1.39
CSMD1-215ENST00000537824 CREB3O43889 395 aa6.38□□□□□ -1.39
CSMD1-215ENST00000537824 TRIM27P14373 513 aa6.38□□□□□ -1.39
CSMD1-215ENST00000537824 ZNF76P36508 570 aa6.38□□□□□ -1.39
CSMD1-215ENST00000537824 GUCY2FP51841 1108 aa6.38□□□□□ -1.39
CSMD1-215ENST00000537824 EPSTI1Q96J88 318 aa6.38□□□□□ -1.39
CSMD1-215ENST00000537824 BAG2O95816 211 aa6.38□□□□□ -1.39
CSMD1-215ENST00000537824 SDSP20132 328 aa6.38□□□□□ -1.39
CSMD1-215ENST00000537824 LRRC2Q9BYS8 371 aa6.38□□□□□ -1.39
CSMD1-215ENST00000537824 IDEP14735 1019 aa6.38□□□□□ -1.39
CSMD1-215ENST00000537824 VSIG1Q86XK7 387 aa6.38□□□□□ -1.39
CSMD1-215ENST00000537824 ARHGAP24Q8N264 748 aa6.38□□□□□ -1.39
CSMD1-215ENST00000537824 GPR161Q8N6U8 529 aaKnown RBP6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms