RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-234	ENST00000536990	C16orf45	Q96MC5	204 aa	Predicted RBP	13.56	□□□□□ -0.24
SYNE1-234	ENST00000536990	STRCP1	A6NGW2	1772 aa		13.56	□□□□□ -0.24
SYNE1-234	ENST00000536990	SMTNL1	A8MU46	457 aa		13.56	□□□□□ -0.24
SYNE1-234	ENST00000536990	DMTN	Q08495	405 aa		13.56	□□□□□ -0.24
SYNE1-234	ENST00000536990	ATG9A	Q7Z3C6	839 aa		13.56	□□□□□ -0.24
SYNE1-234	ENST00000536990	GOLPH3L	Q9H4A5	285 aa		13.56	□□□□□ -0.24
SYNE1-234	ENST00000536990	SH3TC1	Q8TE82	1336 aa		13.55	□□□□□ -0.24
SYNE1-234	ENST00000536990	PCDH11X	Q9BZA7	1347 aa		13.55	□□□□□ -0.24
SYNE1-234	ENST00000536990	PCDH11Y	Q9BZA8	1340 aa		13.55	□□□□□ -0.24
SYNE1-234	ENST00000536990	NCBP1	Q09161	790 aa	Known RBP	13.55	□□□□□ -0.24
SYNE1-234	ENST00000536990	UTP14C	Q5TAP6	766 aa	Known RBP	13.55	□□□□□ -0.24
SYNE1-234	ENST00000536990	TOM1L2	Q6ZVM7	507 aa		13.55	□□□□□ -0.24
SYNE1-234	ENST00000536990	GPR108	Q9NPR9	543 aa		13.55	□□□□□ -0.24
SYNE1-234	ENST00000536990	GLI3	P10071	1580 aa		13.55	□□□□□ -0.24
SYNE1-234	ENST00000536990	ERVV-2	B6SEH9	535 aa		13.55	□□□□□ -0.24
SYNE1-234	ENST00000536990	GOLIM4	O00461	696 aa		13.55	□□□□□ -0.24
SYNE1-234	ENST00000536990	A1BG	P04217	495 aa		13.55	□□□□□ -0.24
SYNE1-234	ENST00000536990	TNNT1	P13805	278 aa		13.55	□□□□□ -0.24
SYNE1-234	ENST00000536990	IL15	P40933	162 aa	Predicted RBP	13.55	□□□□□ -0.24
SYNE1-234	ENST00000536990	TIMM10	P62072	90 aa		13.55	□□□□□ -0.24
SYNE1-234	ENST00000536990	CEBPZ	Q03701	1054 aa	Known RBP	13.55	□□□□□ -0.24
SYNE1-234	ENST00000536990	SNW1	Q13573	536 aa	Known RBP	13.55	□□□□□ -0.24
SYNE1-234	ENST00000536990	SYCP1	Q15431	976 aa		13.55	□□□□□ -0.24
SYNE1-234	ENST00000536990	DHX32	Q7L7V1	743 aa	Known RBP	13.55	□□□□□ -0.24
SYNE1-234	ENST00000536990	CCAR1	Q8IX12	1150 aa	Known RBP	13.55	□□□□□ -0.24
SYNE1-234	ENST00000536990	FTO	Q9C0B1	505 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
SYNE1-234	ENST00000536990	PAG1	Q9NWQ8	432 aa		13.55	□□□□□ -0.24
SYNE1-234	ENST00000536990	CTAGE5	O15320	804 aa		13.54	□□□□□ -0.24
SYNE1-234	ENST00000536990	HMGB1	P09429	215 aa	Known RBP	13.54	□□□□□ -0.24
SYNE1-234	ENST00000536990	FGD1	P98174	961 aa		13.54	□□□□□ -0.24
SYNE1-234	ENST00000536990	EXOSC10	Q01780	885 aa	Known RBP	13.54	□□□□□ -0.24
SYNE1-234	ENST00000536990	MRFAP1L1	Q96HT8	127 aa		13.54	□□□□□ -0.24
SYNE1-234	ENST00000536990	AGXT2	Q9BYV1	514 aa		13.54	□□□□□ -0.24
SYNE1-234	ENST00000536990	PRDM11	Q9NQV5	511 aa		13.54	□□□□□ -0.24
SYNE1-234	ENST00000536990	PARP4	Q9UKK3	1724 aa	Known RBP	13.54	□□□□□ -0.24
SYNE1-234	ENST00000536990	PALLD	Q8WX93	1383 aa		13.54	□□□□□ -0.24
SYNE1-234	ENST00000536990	WDR17	Q8IZU2	1322 aa		13.54	□□□□□ -0.24
SYNE1-234	ENST00000536990	STX1A	Q16623	288 aa		13.54	□□□□□ -0.24
SYNE1-234	ENST00000536990	ENGASE	Q8NFI3	743 aa		13.54	□□□□□ -0.24
SYNE1-234	ENST00000536990	ZBTB3	Q9H5J0	574 aa		13.54	□□□□□ -0.24
SYNE1-234	ENST00000536990	SALL1	Q9NSC2	1324 aa		13.53	□□□□□ -0.24
SYNE1-234	ENST00000536990	PTPDC1	A2A3K4	754 aa		13.53	□□□□□ -0.24
SYNE1-234	ENST00000536990	CCDC191	Q8NCU4	936 aa		13.53	□□□□□ -0.24
SYNE1-234	ENST00000536990	USP28	Q96RU2	1077 aa		13.53	□□□□□ -0.24
SYNE1-234	ENST00000536990	HELLS	Q9NRZ9	838 aa		13.53	□□□□□ -0.24
SYNE1-234	ENST00000536990	APOBR	Q0VD83	1088 aa		13.53	□□□□□ -0.24
SYNE1-234	ENST00000536990	LRRC8A	Q8IWT6	810 aa		13.53	□□□□□ -0.24
SYNE1-234	ENST00000536990	GOLGA6L19	H0YKK7	550 aa		13.53	□□□□□ -0.24
SYNE1-234	ENST00000536990	EYA2	O00167	538 aa		13.53	□□□□□ -0.24
SYNE1-234	ENST00000536990	RBM6	P78332	1123 aa	Known RBP	13.53	□□□□□ -0.24
SYNE1-234	ENST00000536990	SLFNL1	Q499Z3	407 aa		13.53	□□□□□ -0.24
SYNE1-234	ENST00000536990	DSCC1	Q9BVC3	393 aa		13.53	□□□□□ -0.24
SYNE1-234	ENST00000536990	PAXBP1	Q9Y5B6	917 aa		13.53	□□□□□ -0.24
SYNE1-234	ENST00000536990	U2AF2	P26368	475 aa	Known RBP eCLIP	13.52	□□□□□ -0.24
SYNE1-234	ENST00000536990	FOSB	P53539	338 aa		13.52	□□□□□ -0.24
SYNE1-234	ENST00000536990	ARID5B	Q14865	1188 aa		13.52	□□□□□ -0.24
SYNE1-234	ENST00000536990	LRRC24	Q50LG9	513 aa		13.52	□□□□□ -0.24
SYNE1-234	ENST00000536990	ATL3	Q6DD88	541 aa		13.52	□□□□□ -0.24
SYNE1-234	ENST00000536990	ILDR1	Q86SU0	546 aa	Predicted RBP	13.52	□□□□□ -0.24
SYNE1-234	ENST00000536990	ZNF594	Q96JF6	807 aa	Predicted RBP	13.52	□□□□□ -0.24
SYNE1-234	ENST00000536990	IFIT1	P09914	478 aa	Known RBP	13.52	□□□□□ -0.25
SYNE1-234	ENST00000536990	TICAM2	Q86XR7	235 aa		13.52	□□□□□ -0.25
SYNE1-234	ENST00000536990	DHX40	Q8IX18	779 aa	Known RBP	13.52	□□□□□ -0.25
SYNE1-234	ENST00000536990		A0A0G2JLW4	131 aa		13.51	□□□□□ -0.25
SYNE1-234	ENST00000536990	TPD52L1	Q16890	204 aa	Predicted RBP	13.51	□□□□□ -0.25
SYNE1-234	ENST00000536990	ZMYM1	Q5SVZ6	1142 aa		13.51	□□□□□ -0.25
SYNE1-234	ENST00000536990	SPDYE4	A6NLX3	237 aa		13.51	□□□□□ -0.25
SYNE1-234	ENST00000536990	NEMF	O60524	1076 aa		13.51	□□□□□ -0.25
SYNE1-234	ENST00000536990	FAM160A1	Q05DH4	1040 aa		13.51	□□□□□ -0.25
SYNE1-234	ENST00000536990	CCDC73	Q6ZRK6	1079 aa		13.51	□□□□□ -0.25
SYNE1-234	ENST00000536990	ATG3	Q9NT62	314 aa		13.51	□□□□□ -0.25
SYNE1-234	ENST00000536990	NUP188	Q5SRE5	1749 aa		13.51	□□□□□ -0.25
SYNE1-234	ENST00000536990		A0A1B0GUL7	405 aa		13.5	□□□□□ -0.25
SYNE1-234	ENST00000536990	CCT2	P78371	535 aa	Known RBP	13.5	□□□□□ -0.25
SYNE1-234	ENST00000536990	NKX1-1	Q15270	411 aa	Predicted RBP	13.5	□□□□□ -0.25
SYNE1-234	ENST00000536990	ZNF396	Q96N95	335 aa	Predicted RBP	13.5	□□□□□ -0.25
SYNE1-234	ENST00000536990	NCOA5	Q9HCD5	579 aa	Known RBP	13.5	□□□□□ -0.25
SYNE1-234	ENST00000536990		A0A087WWV3	80 aa		13.5	□□□□□ -0.25
SYNE1-234	ENST00000536990	USP27X	A6NNY8	438 aa		13.5	□□□□□ -0.25
SYNE1-234	ENST00000536990		E7EWF7	191 aa		13.5	□□□□□ -0.25
SYNE1-234	ENST00000536990	CIAO1	O76071	339 aa		13.5	□□□□□ -0.25
SYNE1-234	ENST00000536990	IL2RB	P14784	551 aa		13.5	□□□□□ -0.25
SYNE1-234	ENST00000536990	BRINP3	Q76B58	766 aa		13.5	□□□□□ -0.25
SYNE1-234	ENST00000536990	UBR2	Q8IWV8	1755 aa		13.5	□□□□□ -0.25
SYNE1-234	ENST00000536990	KIN	O60870	393 aa	Known RBP	13.5	□□□□□ -0.25
SYNE1-234	ENST00000536990	PDIA3	P30101	505 aa	Known RBP	13.5	□□□□□ -0.25
SYNE1-234	ENST00000536990	FSIP1	Q8NA03	581 aa		13.5	□□□□□ -0.25
SYNE1-234	ENST00000536990	CCDC112	Q8NEF3	446 aa		13.5	□□□□□ -0.25
SYNE1-234	ENST00000536990	GTPBP4	Q9BZE4	634 aa	Known RBP	13.5	□□□□□ -0.25
SYNE1-234	ENST00000536990	ANO10	Q9NW15	660 aa		13.5	□□□□□ -0.25
SYNE1-234	ENST00000536990	CEP126	Q9P2H0	1117 aa		13.5	□□□□□ -0.25
SYNE1-234	ENST00000536990	TJP1	Q07157	1748 aa		13.5	□□□□□ -0.25
SYNE1-234	ENST00000536990	KCP	Q6ZWJ8	1503 aa		13.49	□□□□□ -0.25
SYNE1-234	ENST00000536990	RNF113A	O15541	343 aa	Known RBP	13.49	□□□□□ -0.25
SYNE1-234	ENST00000536990	HSPD1	P10809	573 aa	Known RBP	13.49	□□□□□ -0.25
SYNE1-234	ENST00000536990	NAA30	Q147X3	362 aa	Predicted RBP	13.49	□□□□□ -0.25
SYNE1-234	ENST00000536990	NYAP1	Q6ZVC0	841 aa		13.49	□□□□□ -0.25
SYNE1-234	ENST00000536990	ZNF274	Q96GC6	653 aa	Predicted RBP	13.49	□□□□□ -0.25
SYNE1-234	ENST00000536990	FEZ1	Q99689	392 aa		13.49	□□□□□ -0.25
SYNE1-234	ENST00000536990	PUS3	Q9BZE2	481 aa	Known RBP	13.49	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms