RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.51■□□□□ 0.07
LDLR-203ENST00000535915 ADORA1P30542 326 aa15.5■□□□□ 0.07
LDLR-203ENST00000535915 FOSBP53539 338 aa15.5■□□□□ 0.07
LDLR-203ENST00000535915 CCT2P78371 535 aaKnown RBP15.5■□□□□ 0.07
LDLR-203ENST00000535915 CKAP2LQ8IYA6 745 aa15.5■□□□□ 0.07
LDLR-203ENST00000535915 NSUN7Q8NE18 718 aaKnown RBP15.5■□□□□ 0.07
LDLR-203ENST00000535915 XAGE2Q96GT9 111 aa15.5■□□□□ 0.07
LDLR-203ENST00000535915 DDX19AQ9NUU7 478 aaKnown RBP15.5■□□□□ 0.07
LDLR-203ENST00000535915 ITGB4P16144 1822 aa15.5■□□□□ 0.07
LDLR-203ENST00000535915 TERF1P54274 439 aa15.5■□□□□ 0.07
LDLR-203ENST00000535915 DNAJC10Q8IXB1 793 aa15.5■□□□□ 0.07
LDLR-203ENST00000535915 CFAP45Q9UL16 551 aa15.5■□□□□ 0.07
LDLR-203ENST00000535915 ASAP1Q9ULH1 1129 aa15.5■□□□□ 0.07
LDLR-203ENST00000535915 TYRO3Q06418 890 aa15.49■□□□□ 0.07
LDLR-203ENST00000535915 WASHC4Q2M389 1173 aa15.49■□□□□ 0.07
LDLR-203ENST00000535915 LRRFIP1Q32MZ4 808 aaKnown RBP15.49■□□□□ 0.07
LDLR-203ENST00000535915 CHST3Q7LGC8 479 aa15.49■□□□□ 0.07
LDLR-203ENST00000535915 OSBP2Q969R2 916 aa15.49■□□□□ 0.07
LDLR-203ENST00000535915 PGBD1Q96JS3 809 aa15.49■□□□□ 0.07
LDLR-203ENST00000535915 PTPDC1A2A3K4 754 aa15.49■□□□□ 0.07
LDLR-203ENST00000535915 PCCAP05165 728 aaPredicted RBP15.49■□□□□ 0.07
LDLR-203ENST00000535915 HMGN5P82970 282 aaKnown RBP15.49■□□□□ 0.07
LDLR-203ENST00000535915 TTLL5Q6EMB2 1281 aa15.49■□□□□ 0.07
LDLR-203ENST00000535915 FAM200AQ8TCP9 573 aa15.49■□□□□ 0.07
LDLR-203ENST00000535915 AGXT2Q9BYV1 514 aa15.49■□□□□ 0.07
LDLR-203ENST00000535915 TTC12Q9H892 705 aaPredicted RBP15.49■□□□□ 0.07
LDLR-203ENST00000535915 FBXO3Q9UK99 471 aa15.49■□□□□ 0.07
LDLR-203ENST00000535915 KIF3AQ9Y496 699 aa15.49■□□□□ 0.07
LDLR-203ENST00000535915 MRVI1Q9Y6F6 885 aa15.49■□□□□ 0.07
LDLR-203ENST00000535915 NWD2Q9ULI1 1742 aa15.49■□□□□ 0.07
LDLR-203ENST00000535915 AP5Z1O43299 807 aa15.48■□□□□ 0.07
LDLR-203ENST00000535915 NR1I2O75469 434 aa15.48■□□□□ 0.07
LDLR-203ENST00000535915 CTDNEP1O95476 244 aa15.48■□□□□ 0.07
LDLR-203ENST00000535915 CEBPZQ03701 1054 aaKnown RBP15.48■□□□□ 0.07
LDLR-203ENST00000535915 TRIM28Q13263 835 aaKnown RBP15.48■□□□□ 0.07
LDLR-203ENST00000535915 IFIT5Q13325 482 aaKnown RBP15.48■□□□□ 0.07
LDLR-203ENST00000535915 TEX13AQ9BXU3 409 aaPredicted RBP15.48■□□□□ 0.07
LDLR-203ENST00000535915 NCOA5Q9HCD5 579 aaKnown RBP15.48■□□□□ 0.07
LDLR-203ENST00000535915 MYH3P11055 1940 aa15.48■□□□□ 0.07
LDLR-203ENST00000535915 PIGBQ92521 554 aa15.48■□□□□ 0.07
LDLR-203ENST00000535915 STARD3NLO95772 234 aa15.47■□□□□ 0.07
LDLR-203ENST00000535915 NAA16Q6N069 864 aaPredicted RBP15.47■□□□□ 0.07
LDLR-203ENST00000535915 ZBTB38Q8NAP3 1195 aaPredicted RBP15.47■□□□□ 0.07
LDLR-203ENST00000535915 CLSTN2Q9H4D0 955 aa15.47■□□□□ 0.07
LDLR-203ENST00000535915 PPFIA3O75145 1194 aa15.47■□□□□ 0.07
LDLR-203ENST00000535915 ZFYP08048 801 aaPredicted RBP15.47■□□□□ 0.07
LDLR-203ENST00000535915 PDIA3P30101 505 aaKnown RBP15.47■□□□□ 0.07
LDLR-203ENST00000535915 SCARF1Q14162 830 aa15.47■□□□□ 0.07
LDLR-203ENST00000535915 ANO6Q4KMQ2 910 aa15.47■□□□□ 0.07
LDLR-203ENST00000535915 CTNNA3Q9UI47 895 aa15.47■□□□□ 0.07
LDLR-203ENST00000535915 STRCQ7RTU9 1775 aa15.46■□□□□ 0.07
LDLR-203ENST00000535915 CSF1RP07333 972 aa15.46■□□□□ 0.07
LDLR-203ENST00000535915 ZNF274Q96GC6 653 aaPredicted RBP15.46■□□□□ 0.07
LDLR-203ENST00000535915 PLA2G12BQ9BX93 195 aa15.46■□□□□ 0.07
LDLR-203ENST00000535915 GPTP24298 496 aa15.46■□□□□ 0.06
LDLR-203ENST00000535915 ZAP70P43403 619 aa15.46■□□□□ 0.06
LDLR-203ENST00000535915 HAND2P61296 217 aa15.46■□□□□ 0.06
LDLR-203ENST00000535915 IMMTQ16891 758 aaKnown RBP15.46■□□□□ 0.06
LDLR-203ENST00000535915 DNTTIP2Q5QJE6 756 aaKnown RBP15.46■□□□□ 0.06
LDLR-203ENST00000535915 LUZP1Q86V48 1076 aa15.46■□□□□ 0.06
LDLR-203ENST00000535915 SYNE4Q8N205 404 aa15.46■□□□□ 0.06
LDLR-203ENST00000535915 PIBF1Q8WXW3 757 aa15.46■□□□□ 0.06
LDLR-203ENST00000535915 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.46■□□□□ 0.06
LDLR-203ENST00000535915 ANKRD36CQ5JPF3 1778 aa15.45■□□□□ 0.06
LDLR-203ENST00000535915 MAP3K15Q6ZN16 1313 aa15.45■□□□□ 0.06
LDLR-203ENST00000535915 ZNF335Q9H4Z2 1342 aaPredicted RBP15.45■□□□□ 0.06
LDLR-203ENST00000535915 HSP90AB3PQ58FF7 597 aa15.45■□□□□ 0.06
LDLR-203ENST00000535915 SASS6Q6UVJ0 657 aa15.45■□□□□ 0.06
LDLR-203ENST00000535915 GIGYF2Q6Y7W6 1299 aaKnown RBP15.45■□□□□ 0.06
LDLR-203ENST00000535915 RBM43Q6ZSC3 357 aaKnown RBP15.45■□□□□ 0.06
LDLR-203ENST00000535915 AKAP11Q9UKA4 1901 aa15.45■□□□□ 0.06
LDLR-203ENST00000535915 MYO5AQ9Y4I1 1855 aaKnown RBP15.45■□□□□ 0.06
LDLR-203ENST00000535915 HLFQ16534 295 aa15.45■□□□□ 0.06
LDLR-203ENST00000535915 METTL24Q5JXM2 366 aa15.45■□□□□ 0.06
LDLR-203ENST00000535915 SPC24Q8NBT2 197 aa15.45■□□□□ 0.06
LDLR-203ENST00000535915 SALL1Q9NSC2 1324 aa15.44■□□□□ 0.06
LDLR-203ENST00000535915 UQCRHLA0A096LP55 91 aa15.44■□□□□ 0.06
LDLR-203ENST00000535915 UQCRHP07919 91 aa15.44■□□□□ 0.06
LDLR-203ENST00000535915 ADD1P35611 737 aaKnown RBP15.44■□□□□ 0.06
LDLR-203ENST00000535915 GUCY1B3Q02153 619 aa15.44■□□□□ 0.06
LDLR-203ENST00000535915 ATP2B3Q16720 1220 aa15.44■□□□□ 0.06
LDLR-203ENST00000535915 PI16Q6UXB8 463 aa15.44■□□□□ 0.06
LDLR-203ENST00000535915 LDHAL6AQ6ZMR3 332 aa15.44■□□□□ 0.06
LDLR-203ENST00000535915 CHMP4CQ96CF2 233 aa15.44■□□□□ 0.06
LDLR-203ENST00000535915 NUP98P52948 1817 aa15.44■□□□□ 0.06
LDLR-203ENST00000535915 FGAP02671 866 aa15.44■□□□□ 0.06
LDLR-203ENST00000535915 NOLC1Q14978 699 aaKnown RBP eCLIP15.44■□□□□ 0.069e-6■□□□□ 9.6
LDLR-203ENST00000535915 APPBP2Q92624 585 aa15.44■□□□□ 0.06
LDLR-203ENST00000535915 FTOQ9C0B1 505 aaKnown RBP eCLIP15.44■□□□□ 0.06
LDLR-203ENST00000535915 PUS7LQ9H0K6 701 aaKnown RBP15.44■□□□□ 0.06
LDLR-203ENST00000535915 CBX8Q9HC52 389 aa15.44■□□□□ 0.06
LDLR-203ENST00000535915 FOXP2O15409 715 aa15.43■□□□□ 0.06
LDLR-203ENST00000535915 ITGA6P23229 1130 aa15.43■□□□□ 0.06
LDLR-203ENST00000535915 RIC1Q4ADV7 1423 aa15.43■□□□□ 0.06
LDLR-203ENST00000535915 CARMIL3Q8ND23 1372 aa15.43■□□□□ 0.06
LDLR-203ENST00000535915 GOLGA6L6A8MZA4 724 aa15.43■□□□□ 0.06
LDLR-203ENST00000535915 NLRP10Q86W26 655 aa15.43■□□□□ 0.06
LDLR-203ENST00000535915 ZNF396Q96N95 335 aaPredicted RBP15.43■□□□□ 0.06
LDLR-203ENST00000535915 GREM2Q9H772 168 aa15.43■□□□□ 0.06
LDLR-203ENST00000535915 GPHNQ9NQX3 736 aaPredicted RBP15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms