RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 KANSL3Q9P2N6 904 aa5.58□□□□□ -1.52
CSMD3-210ENST00000534172 A0A1W2PP55 124 aa5.57□□□□□ -1.52
CSMD3-210ENST00000534172 PDE2AO00408 941 aaPredicted RBP5.57□□□□□ -1.52
CSMD3-210ENST00000534172 ZNF16P17020 682 aaPredicted RBP5.57□□□□□ -1.52
CSMD3-210ENST00000534172 LCE2AQ5TA79 106 aaPredicted RBP5.57□□□□□ -1.52
CSMD3-210ENST00000534172 LYPD4Q6UWN0 246 aa5.57□□□□□ -1.52
CSMD3-210ENST00000534172 NEDD1Q8NHV4 660 aa5.57□□□□□ -1.52
CSMD3-210ENST00000534172 DZANK1Q9NVP4 752 aa5.57□□□□□ -1.52
CSMD3-210ENST00000534172 AK5Q9Y6K8 562 aa5.57□□□□□ -1.52
CSMD3-210ENST00000534172 CCDC180Q9P1Z9 1646 aa5.57□□□□□ -1.52
CSMD3-210ENST00000534172 UNCXA6NJT0 531 aa5.57□□□□□ -1.52
CSMD3-210ENST00000534172 LILRB5O75023 590 aa5.57□□□□□ -1.52
CSMD3-210ENST00000534172 RPS26P11Q5JNZ5 115 aaPredicted RBP5.57□□□□□ -1.52
CSMD3-210ENST00000534172 PERM1Q5SV97 790 aa5.57□□□□□ -1.52
CSMD3-210ENST00000534172 PSAPL1Q6NUJ1 521 aa5.57□□□□□ -1.52
CSMD3-210ENST00000534172 MAP4K3Q8IVH8 894 aa5.57□□□□□ -1.52
CSMD3-210ENST00000534172 SVOPQ8N4V2 548 aa5.57□□□□□ -1.52
CSMD3-210ENST00000534172 DDX54Q8TDD1 881 aaKnown RBP5.57□□□□□ -1.52
CSMD3-210ENST00000534172 DUSP9Q99956 384 aaKnown RBP5.57□□□□□ -1.52
CSMD3-210ENST00000534172 FAM8A1Q9UBU6 413 aa5.57□□□□□ -1.52
CSMD3-210ENST00000534172 GSTT1P30711 240 aa5.56□□□□□ -1.52
CSMD3-210ENST00000534172 CABP4P57796 275 aa5.56□□□□□ -1.52
CSMD3-210ENST00000534172 MLLT1Q03111 559 aaPredicted RBP5.56□□□□□ -1.52
CSMD3-210ENST00000534172 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.56□□□□□ -1.52
CSMD3-210ENST00000534172 USPL1Q5W0Q7 1092 aa5.56□□□□□ -1.52
CSMD3-210ENST00000534172 ANKRD24Q8TF21 1146 aa5.56□□□□□ -1.52
CSMD3-210ENST00000534172 ADAM19Q9H013 955 aa5.56□□□□□ -1.52
CSMD3-210ENST00000534172 SMG9Q9H0W8 520 aaKnown RBP5.56□□□□□ -1.52
CSMD3-210ENST00000534172 C12orf49Q9H741 205 aa5.56□□□□□ -1.52
CSMD3-210ENST00000534172 NPHS2Q9NP85 383 aa5.56□□□□□ -1.52
CSMD3-210ENST00000534172 PARP2Q9UGN5 583 aa5.56□□□□□ -1.52
CSMD3-210ENST00000534172 SORBS3O60504 671 aa5.56□□□□□ -1.52
CSMD3-210ENST00000534172 POLR3DP05423 398 aaPredicted RBP5.56□□□□□ -1.52
CSMD3-210ENST00000534172 COL13A1Q5TAT6 717 aaPredicted RBP5.56□□□□□ -1.52
CSMD3-210ENST00000534172 CEP135Q66GS9 1140 aa5.56□□□□□ -1.52
CSMD3-210ENST00000534172 ZNF385CQ66K41 422 aaPredicted RBP5.56□□□□□ -1.52
CSMD3-210ENST00000534172 ZSCAN1Q8NBB4 408 aa5.56□□□□□ -1.52
CSMD3-210ENST00000534172 WNT8BQ93098 351 aa5.56□□□□□ -1.52
CSMD3-210ENST00000534172 NXPE3Q969Y0 559 aa5.56□□□□□ -1.52
CSMD3-210ENST00000534172 LPIN3Q9BQK8 851 aa5.56□□□□□ -1.52
CSMD3-210ENST00000534172 J3QW42 95 aa5.55□□□□□ -1.52
CSMD3-210ENST00000534172 FAM117BQ6P1L5 589 aa5.55□□□□□ -1.52
CSMD3-210ENST00000534172 C20orf204Q6ZNR8 217 aa5.55□□□□□ -1.52
CSMD3-210ENST00000534172 HFE2Q6ZVN8 426 aa5.55□□□□□ -1.52
CSMD3-210ENST00000534172 PODNQ7Z5L7 613 aa5.55□□□□□ -1.52
CSMD3-210ENST00000534172 CCNJLQ8IV13 435 aa5.55□□□□□ -1.52
CSMD3-210ENST00000534172 ZKSCAN3Q9BRR0 538 aa5.55□□□□□ -1.52
CSMD3-210ENST00000534172 PPM1HQ9ULR3 514 aa5.55□□□□□ -1.52
CSMD3-210ENST00000534172 SHROOM4Q9ULL8 1493 aa5.55□□□□□ -1.52
CSMD3-210ENST00000534172 TMEM238LA0A1B0GVL6 79 aa5.55□□□□□ -1.52
CSMD3-210ENST00000534172 CDC27P30260 824 aa5.55□□□□□ -1.52
CSMD3-210ENST00000534172 DTWD1Q8N5C7 304 aa5.55□□□□□ -1.52
CSMD3-210ENST00000534172 EPS8L3Q8TE67 593 aaKnown RBP5.55□□□□□ -1.52
CSMD3-210ENST00000534172 BSNDQ8WZ55 320 aa5.55□□□□□ -1.52
CSMD3-210ENST00000534172 BCO2Q9BYV7 579 aa5.55□□□□□ -1.52
CSMD3-210ENST00000534172 RASSF4Q9H2L5 321 aa5.55□□□□□ -1.52
CSMD3-210ENST00000534172 JPH1Q9HDC5 661 aaPredicted RBP5.55□□□□□ -1.52
CSMD3-210ENST00000534172 ARL4DP49703 201 aa5.54□□□□□ -1.52
CSMD3-210ENST00000534172 HNRNPUQ00839 825 aaKnown RBP eCLIP5.54□□□□□ -1.52
CSMD3-210ENST00000534172 PEAR1Q5VY43 1037 aaPredicted RBP5.54□□□□□ -1.52
CSMD3-210ENST00000534172 WWC3Q9ULE0 1092 aa5.54□□□□□ -1.52
CSMD3-210ENST00000534172 MKL2Q9ULH7 1088 aa5.54□□□□□ -1.52
CSMD3-210ENST00000534172 STARD13Q9Y3M8 1113 aa5.54□□□□□ -1.52
CSMD3-210ENST00000534172 ARHGEF15O94989 841 aa5.54□□□□□ -1.52
CSMD3-210ENST00000534172 GRM2Q14416 872 aa5.54□□□□□ -1.52
CSMD3-210ENST00000534172 ALYREFQ86V81 257 aaKnown RBP5.54□□□□□ -1.52
CSMD3-210ENST00000534172 WFDC8Q8IUA0 241 aa5.54□□□□□ -1.52
CSMD3-210ENST00000534172 NOP53Q9NZM5 478 aaKnown RBP5.54□□□□□ -1.52
CSMD3-210ENST00000534172 M0R082 166 aa5.53□□□□□ -1.52
CSMD3-210ENST00000534172 NFKBIEO00221 500 aa5.53□□□□□ -1.52
CSMD3-210ENST00000534172 LCE2CQ5TA81 110 aa5.53□□□□□ -1.52
CSMD3-210ENST00000534172 BEND7Q8N7W2 519 aaPredicted RBP5.53□□□□□ -1.52
CSMD3-210ENST00000534172 ZNF417Q8TAU3 575 aa5.53□□□□□ -1.52
CSMD3-210ENST00000534172 ZNF587Q96SQ5 575 aaPredicted RBP5.53□□□□□ -1.52
CSMD3-210ENST00000534172 TCF12Q99081 682 aa5.53□□□□□ -1.52
CSMD3-210ENST00000534172 CEP44Q9C0F1 390 aa5.53□□□□□ -1.52
CSMD3-210ENST00000534172 RRAGCQ9HB90 399 aa5.53□□□□□ -1.52
CSMD3-210ENST00000534172 VTI1BQ9UEU0 232 aa5.53□□□□□ -1.52
CSMD3-210ENST00000534172 CC2D2AQ9P2K1 1620 aa5.53□□□□□ -1.52
CSMD3-210ENST00000534172 SHISA8B8ZZ34 492 aa5.53□□□□□ -1.52
CSMD3-210ENST00000534172 ITPKAP23677 461 aa5.53□□□□□ -1.52
CSMD3-210ENST00000534172 DTHD1Q6ZMT9 781 aa5.53□□□□□ -1.52
CSMD3-210ENST00000534172 SCARF2Q96GP6 870 aaPredicted RBP5.53□□□□□ -1.52
CSMD3-210ENST00000534172 A0A096LPE4 126 aa5.52□□□□□ -1.53
CSMD3-210ENST00000534172 A0A1W2PPZ6 126 aa5.52□□□□□ -1.53
CSMD3-210ENST00000534172 GNB5O14775 395 aa5.52□□□□□ -1.53
CSMD3-210ENST00000534172 ATP11AP98196 1134 aa5.52□□□□□ -1.53
CSMD3-210ENST00000534172 C1orf229Q6ZS94 237 aaPredicted RBP5.52□□□□□ -1.53
CSMD3-210ENST00000534172 POP1Q99575 1024 aaKnown RBP5.52□□□□□ -1.53
CSMD3-210ENST00000534172 SOX17Q9H6I2 414 aaPredicted RBP5.52□□□□□ -1.53
CSMD3-210ENST00000534172 OSGEPQ9NPF4 335 aa5.52□□□□□ -1.53
CSMD3-210ENST00000534172 NAGPAQ9UK23 515 aa5.52□□□□□ -1.53
CSMD3-210ENST00000534172 PPME1Q9Y570 386 aa5.52□□□□□ -1.53
CSMD3-210ENST00000534172 ALBP02768 609 aa5.52□□□□□ -1.53
CSMD3-210ENST00000534172 RLBP1P12271 317 aa5.52□□□□□ -1.53
CSMD3-210ENST00000534172 ST13P50502 369 aaKnown RBP5.52□□□□□ -1.53
CSMD3-210ENST00000534172 RAC1P63000 192 aa5.52□□□□□ -1.53
CSMD3-210ENST00000534172 MSL1Q68DK7 614 aa5.52□□□□□ -1.53
CSMD3-210ENST00000534172 IL22RA1Q8N6P7 574 aa5.52□□□□□ -1.53
CSMD3-210ENST00000534172 NUDT8Q8WV74 236 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms