RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 RGPD1P0DJD0 1748 aa13.04□□□□□ -0.32
TRIM3-211ENST00000532542 CCDC196A0A1B0GTZ2 297 aa13.04□□□□□ -0.32
TRIM3-211ENST00000532542 KINO60870 393 aaKnown RBP13.04□□□□□ -0.32
TRIM3-211ENST00000532542 F13A1P00488 732 aa13.04□□□□□ -0.32
TRIM3-211ENST00000532542 CYP7A1P22680 504 aa13.04□□□□□ -0.32
TRIM3-211ENST00000532542 CEBPZQ03701 1054 aaKnown RBP13.04□□□□□ -0.32
TRIM3-211ENST00000532542 MFSD6Q6ZSS7 791 aa13.04□□□□□ -0.32
TRIM3-211ENST00000532542 JMYQ8N9B5 988 aa13.04□□□□□ -0.32
TRIM3-211ENST00000532542 CNNM2Q9H8M5 875 aa13.04□□□□□ -0.32
TRIM3-211ENST00000532542 IFIT3O14879 490 aaKnown RBP13.04□□□□□ -0.32
TRIM3-211ENST00000532542 SYT1P21579 422 aa13.04□□□□□ -0.32
TRIM3-211ENST00000532542 C8orf76Q96K31 380 aa13.04□□□□□ -0.32
TRIM3-211ENST00000532542 MAGEB6Q8N7X4 407 aa13.04□□□□□ -0.32
TRIM3-211ENST00000532542 NUP133Q8WUM0 1156 aa13.04□□□□□ -0.32
TRIM3-211ENST00000532542 ZSCAN16Q9H4T2 348 aaPredicted RBP13.04□□□□□ -0.32
TRIM3-211ENST00000532542 GDPD2Q9HCC8 539 aa13.04□□□□□ -0.32
TRIM3-211ENST00000532542 BRPF3Q9ULD4 1205 aa13.04□□□□□ -0.32
TRIM3-211ENST00000532542 IQSEC3Q9UPP2 1182 aaPredicted RBP13.04□□□□□ -0.32
TRIM3-211ENST00000532542 GPAA1O43292 621 aa13.03□□□□□ -0.32
TRIM3-211ENST00000532542 ME1P48163 572 aa13.03□□□□□ -0.32
TRIM3-211ENST00000532542 UBE2HP62256 183 aa13.03□□□□□ -0.32
TRIM3-211ENST00000532542 KRT23Q9C075 422 aa13.03□□□□□ -0.32
TRIM3-211ENST00000532542 SLC12A7Q9Y666 1083 aa13.03□□□□□ -0.32
TRIM3-211ENST00000532542 SALL3Q9BXA9 1300 aa13.03□□□□□ -0.32
TRIM3-211ENST00000532542 SYCE3A1L190 88 aa13.03□□□□□ -0.32
TRIM3-211ENST00000532542 CCDC173Q0VFZ6 552 aa13.03□□□□□ -0.32
TRIM3-211ENST00000532542 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.03□□□□□ -0.32
TRIM3-211ENST00000532542 SDF4Q9BRK5 362 aa13.03□□□□□ -0.32
TRIM3-211ENST00000532542 KLF18A0A0U1RQI7 1052 aa13.03□□□□□ -0.32
TRIM3-211ENST00000532542 PRC1O43663 620 aa13.03□□□□□ -0.32
TRIM3-211ENST00000532542 CCDC192P0DO97 292 aa13.03□□□□□ -0.32
TRIM3-211ENST00000532542 CCDC183Q5T5S1 534 aa13.03□□□□□ -0.32
TRIM3-211ENST00000532542 KAZALD1Q96I82 304 aa13.03□□□□□ -0.32
TRIM3-211ENST00000532542 HOOK1Q9UJC3 728 aaKnown RBP13.03□□□□□ -0.32
TRIM3-211ENST00000532542 SLC4A4Q9Y6R1 1079 aa13.03□□□□□ -0.32
TRIM3-211ENST00000532542 JCADQ9P266 1359 aa13.03□□□□□ -0.32
TRIM3-211ENST00000532542 CUL4AQ13619 759 aa13.02□□□□□ -0.32
TRIM3-211ENST00000532542 TMEM67Q5HYA8 995 aa13.02□□□□□ -0.32
TRIM3-211ENST00000532542 CLEC4GQ6UXB4 293 aa13.02□□□□□ -0.32
TRIM3-211ENST00000532542 SPATA5Q8NB90 893 aa13.02□□□□□ -0.32
TRIM3-211ENST00000532542 TRPC5Q9UL62 973 aaPredicted RBP13.02□□□□□ -0.32
TRIM3-211ENST00000532542 CAMTA1Q9Y6Y1 1673 aa13.02□□□□□ -0.32
TRIM3-211ENST00000532542 ZMYM1Q5SVZ6 1142 aa13.02□□□□□ -0.33
TRIM3-211ENST00000532542 NAA16Q6N069 864 aaPredicted RBP13.02□□□□□ -0.33
TRIM3-211ENST00000532542 BARGINQ6ZT62 677 aa13.02□□□□□ -0.33
TRIM3-211ENST00000532542 IQCA1Q86XH1 822 aa13.02□□□□□ -0.33
TRIM3-211ENST00000532542 SEC62Q99442 399 aaKnown RBP13.02□□□□□ -0.33
TRIM3-211ENST00000532542 PLA2G12BQ9BX93 195 aa13.02□□□□□ -0.33
TRIM3-211ENST00000532542 ABCC6O95255 1503 aa13.02□□□□□ -0.33
TRIM3-211ENST00000532542 ADORA1P30542 326 aa13.02□□□□□ -0.33
TRIM3-211ENST00000532542 CCDC102BQ68D86 513 aa13.02□□□□□ -0.33
TRIM3-211ENST00000532542 TRIM34Q9BYJ4 488 aa13.02□□□□□ -0.33
TRIM3-211ENST00000532542 TNMDQ9H2S6 317 aa13.02□□□□□ -0.33
TRIM3-211ENST00000532542 DENND2AQ9ULE3 1009 aa13.02□□□□□ -0.33
TRIM3-211ENST00000532542 MED1Q15648 1581 aaPredicted RBP13.02□□□□□ -0.33
TRIM3-211ENST00000532542 BRD1O95696 1058 aa13.02□□□□□ -0.33
TRIM3-211ENST00000532542 LDHCP07864 332 aa13.02□□□□□ -0.33
TRIM3-211ENST00000532542 RFX7Q2KHR2 1363 aa13.01□□□□□ -0.33
TRIM3-211ENST00000532542 CNBD1Q8NA66 436 aa13.01□□□□□ -0.33
TRIM3-211ENST00000532542 NAP1L5Q96NT1 182 aaPredicted RBP13.01□□□□□ -0.33
TRIM3-211ENST00000532542 NUP62CLQ9H1M0 184 aa13.01□□□□□ -0.33
TRIM3-211ENST00000532542 GOLGA8AA7E2F4 631 aa13.01□□□□□ -0.33
TRIM3-211ENST00000532542 USP5P45974 858 aa13.01□□□□□ -0.33
TRIM3-211ENST00000532542 NECTIN1Q15223 517 aa13.01□□□□□ -0.33
TRIM3-211ENST00000532542 ORC3Q9UBD5 711 aaPredicted RBP13.01□□□□□ -0.33
TRIM3-211ENST00000532542 SPATA31A5Q5VU36 1347 aa13.01□□□□□ -0.33
TRIM3-211ENST00000532542 SPATA31A7Q8IWB4 1347 aa13.01□□□□□ -0.33
TRIM3-211ENST00000532542 RFX5P48382 616 aaPredicted RBP13.01□□□□□ -0.33
TRIM3-211ENST00000532542 METAP2P50579 478 aaKnown RBP eCLIP13.01□□□□□ -0.33
TRIM3-211ENST00000532542 ZNF589Q86UQ0 364 aaPredicted RBP13.01□□□□□ -0.33
TRIM3-211ENST00000532542 RASSF8Q8NHQ8 419 aa13.01□□□□□ -0.33
TRIM3-211ENST00000532542 ZNF287Q9HBT7 754 aa13.01□□□□□ -0.33
TRIM3-211ENST00000532542 CACNA1FO60840 1977 aa13□□□□□ -0.33
TRIM3-211ENST00000532542 KDM4AO75164 1064 aa13□□□□□ -0.33
TRIM3-211ENST00000532542 HSPD1P10809 573 aaKnown RBP13□□□□□ -0.33
TRIM3-211ENST00000532542 APOBRQ0VD83 1088 aa13□□□□□ -0.33
TRIM3-211ENST00000532542 SUSD4Q5VX71 490 aa13□□□□□ -0.33
TRIM3-211ENST00000532542 CRNKL1Q9BZJ0 848 aaKnown RBP13□□□□□ -0.33
TRIM3-211ENST00000532542 ADCK5Q3MIX3 580 aa13□□□□□ -0.33
TRIM3-211ENST00000532542 USP48Q86UV5 1035 aa13□□□□□ -0.33
TRIM3-211ENST00000532542 SLF2Q8IX21 1173 aa13□□□□□ -0.33
TRIM3-211ENST00000532542 TMTC2Q8N394 836 aa13□□□□□ -0.33
TRIM3-211ENST00000532542 LLPHQ9BRT6 129 aaKnown RBP13□□□□□ -0.33
TRIM3-211ENST00000532542 MAGEB6P1A0A0J9YX57 407 aa13□□□□□ -0.33
TRIM3-211ENST00000532542 MBD4O95243 580 aa13□□□□□ -0.33
TRIM3-211ENST00000532542 BAG3O95817 575 aa13□□□□□ -0.33
TRIM3-211ENST00000532542 RANBP6O60518 1105 aaKnown RBP12.99□□□□□ -0.33
TRIM3-211ENST00000532542 RPS8P62241 208 aaKnown RBP12.99□□□□□ -0.33
TRIM3-211ENST00000532542 VPS72Q15906 364 aa12.99□□□□□ -0.33
TRIM3-211ENST00000532542 ATG9AQ7Z3C6 839 aa12.99□□□□□ -0.33
TRIM3-211ENST00000532542 MARCH10Q8NA82 808 aaPredicted RBP12.99□□□□□ -0.33
TRIM3-211ENST00000532542 CNPY2Q9Y2B0 182 aa12.99□□□□□ -0.33
TRIM3-211ENST00000532542 ZNF532Q9HCE3 1301 aa12.99□□□□□ -0.33
TRIM3-211ENST00000532542 ZSCAN23Q3MJ62 389 aa12.99□□□□□ -0.33
TRIM3-211ENST00000532542 EIF5P55010 431 aaKnown RBP12.99□□□□□ -0.33
TRIM3-211ENST00000532542 SF3B2Q13435 895 aaKnown RBP12.99□□□□□ -0.33
TRIM3-211ENST00000532542 ME3Q16798 604 aa12.99□□□□□ -0.33
TRIM3-211ENST00000532542 MICU3Q86XE3 530 aa12.99□□□□□ -0.33
TRIM3-211ENST00000532542 E7EWF7 191 aa12.99□□□□□ -0.33
TRIM3-211ENST00000532542 C6orf229H3BNL8 230 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms