RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 PLA2G12BQ9BX93 195 aa18.75■□□□□ 0.59
VPS28-215ENST00000531924 LEMD3Q9Y2U8 911 aa18.75■□□□□ 0.59
VPS28-215ENST00000531924 CHMP3Q9Y3E7 222 aa18.75■□□□□ 0.59
VPS28-215ENST00000531924 MED23Q9ULK4 1368 aa18.75■□□□□ 0.59
VPS28-215ENST00000531924 ANKRD18BA2A2Z9 1011 aa18.74■□□□□ 0.59
VPS28-215ENST00000531924 BRPF1P55201 1214 aaPredicted RBP18.74■□□□□ 0.59
VPS28-215ENST00000531924 ANGEL2Q5VTE6 544 aaKnown RBP18.74■□□□□ 0.59
VPS28-215ENST00000531924 MYOZ2Q9NPC6 264 aa18.74■□□□□ 0.59
VPS28-215ENST00000531924 CCDC102AQ96A19 550 aa18.73■□□□□ 0.59
VPS28-215ENST00000531924 COA1Q9GZY4 146 aa18.73■□□□□ 0.59
VPS28-215ENST00000531924 TSKSQ9UJT2 592 aa18.73■□□□□ 0.59
VPS28-215ENST00000531924 ZNF804BA4D1E1 1349 aa18.73■□□□□ 0.59
VPS28-215ENST00000531924 WTIPA6NIX2 430 aaPredicted RBP18.72■□□□□ 0.59
VPS28-215ENST00000531924 ZNF157P51786 506 aaPredicted RBP18.72■□□□□ 0.59
VPS28-215ENST00000531924 IFIT5Q13325 482 aaKnown RBP18.72■□□□□ 0.59
VPS28-215ENST00000531924 RGMBQ6NW40 437 aa18.72■□□□□ 0.59
VPS28-215ENST00000531924 ASTN2O75129 1339 aaPredicted RBP18.72■□□□□ 0.59
VPS28-215ENST00000531924 MYO3BQ8WXR4 1341 aa18.72■□□□□ 0.59
VPS28-215ENST00000531924 F6X3S4 739 aa18.71■□□□□ 0.59
VPS28-215ENST00000531924 CSF1RP07333 972 aa18.71■□□□□ 0.59
VPS28-215ENST00000531924 STRIP1Q5VSL9 837 aa18.71■□□□□ 0.59
VPS28-215ENST00000531924 CDCA5Q96FF9 252 aa18.71■□□□□ 0.59
VPS28-215ENST00000531924 GMLQ99445 158 aa18.71■□□□□ 0.59
VPS28-215ENST00000531924 ZNF609O15014 1411 aa18.7■□□□□ 0.58
VPS28-215ENST00000531924 CASP7P55210 303 aa18.7■□□□□ 0.58
VPS28-215ENST00000531924 TAF7LQ5H9L4 462 aa18.7■□□□□ 0.58
VPS28-215ENST00000531924 THSD7BQ9C0I4 1608 aa18.7■□□□□ 0.58
VPS28-215ENST00000531924 CHRNDQ07001 517 aa18.69■□□□□ 0.58
VPS28-215ENST00000531924 DACT2Q5SW24 774 aa18.69■□□□□ 0.58
VPS28-215ENST00000531924 TTLL5Q6EMB2 1281 aa18.69■□□□□ 0.58
VPS28-215ENST00000531924 SLC4A10Q6U841 1118 aa18.69■□□□□ 0.58
VPS28-215ENST00000531924 C9orf78Q9NZ63 289 aaPredicted RBP18.69■□□□□ 0.58
VPS28-215ENST00000531924 HDAC9Q9UKV0 1011 aa18.69■□□□□ 0.58
VPS28-215ENST00000531924 SCN9AQ15858 1988 aa18.68■□□□□ 0.58
VPS28-215ENST00000531924 CCDC57Q2TAC2 916 aa18.68■□□□□ 0.58
VPS28-215ENST00000531924 BEND3Q5T5X7 828 aa18.68■□□□□ 0.58
VPS28-215ENST00000531924 ABHD8Q96I13 439 aa18.68■□□□□ 0.58
VPS28-215ENST00000531924 MXD3Q9BW11 206 aa18.68■□□□□ 0.58
VPS28-215ENST00000531924 SPINK5Q9NQ38 1064 aaPredicted RBP18.68■□□□□ 0.58
VPS28-215ENST00000531924 PITPNM2Q9BZ72 1349 aa18.68■□□□□ 0.58
VPS28-215ENST00000531924 GRM8O00222 908 aa18.67■□□□□ 0.58
VPS28-215ENST00000531924 MMP14P50281 582 aa18.67■□□□□ 0.58
VPS28-215ENST00000531924 TXNRD3Q86VQ6 643 aa18.67■□□□□ 0.58
VPS28-215ENST00000531924 MYH3P11055 1940 aa18.66■□□□□ 0.58
VPS28-215ENST00000531924 NF2P35240 595 aa18.66■□□□□ 0.58
VPS28-215ENST00000531924 FKBP1BP68106 108 aa18.66■□□□□ 0.58
VPS28-215ENST00000531924 GTF2IP78347 998 aa18.66■□□□□ 0.58
VPS28-215ENST00000531924 FOXO4P98177 505 aa18.66■□□□□ 0.58
VPS28-215ENST00000531924 KIF23Q02241 960 aaPredicted RBP18.66■□□□□ 0.58
VPS28-215ENST00000531924 TTLL12Q14166 644 aaPredicted RBP18.66■□□□□ 0.58
VPS28-215ENST00000531924 NBPF9Q3BBW0 867 aa18.66■□□□□ 0.58
VPS28-215ENST00000531924 LMBR1LQ6UX01 489 aa18.66■□□□□ 0.58
VPS28-215ENST00000531924 TAF5LO75529 589 aa18.65■□□□□ 0.58
VPS28-215ENST00000531924 KLRK1P26718 216 aa18.65■□□□□ 0.58
VPS28-215ENST00000531924 KIAA0825Q8IV33 1275 aa18.65■□□□□ 0.58
VPS28-215ENST00000531924 HELBQ8NG08 1087 aaPredicted RBP18.65■□□□□ 0.58
VPS28-215ENST00000531924 ZIC5Q96T25 663 aa18.65■□□□□ 0.58
VPS28-215ENST00000531924 SRCIN1Q9C0H9 1055 aa18.65■□□□□ 0.58
VPS28-215ENST00000531924 CNNM1Q9NRU3 951 aa18.65■□□□□ 0.58
VPS28-215ENST00000531924 SPEF2Q9C093 1822 aa18.65■□□□□ 0.58
VPS28-215ENST00000531924 FAM155AB1AL88 458 aaPredicted RBP18.64■□□□□ 0.57
VPS28-215ENST00000531924 PLIN1O60240 522 aa18.64■□□□□ 0.57
VPS28-215ENST00000531924 ALDH1L1O75891 902 aa18.64■□□□□ 0.57
VPS28-215ENST00000531924 LDHAL6AQ6ZMR3 332 aa18.64■□□□□ 0.57
VPS28-215ENST00000531924 ZNF804AQ7Z570 1209 aa18.64■□□□□ 0.57
VPS28-215ENST00000531924 CD209Q9NNX6 404 aa18.64■□□□□ 0.57
VPS28-215ENST00000531924 SCAF8Q9UPN6 1271 aaKnown RBP18.64■□□□□ 0.57
VPS28-215ENST00000531924 CCDC85CA6NKD9 419 aa18.63■□□□□ 0.57
VPS28-215ENST00000531924 WNT10BO00744 389 aa18.63■□□□□ 0.57
VPS28-215ENST00000531924 SASH1O94885 1247 aa18.63■□□□□ 0.57
VPS28-215ENST00000531924 SLC10A3P09131 477 aa18.62■□□□□ 0.57
VPS28-215ENST00000531924 PRAMEF18Q5VWM3 479 aa18.62■□□□□ 0.57
VPS28-215ENST00000531924 APOBEC3FQ8IUX4 373 aaKnown RBP18.62■□□□□ 0.57
VPS28-215ENST00000531924 REM2Q8IYK8 340 aaPredicted RBP18.62■□□□□ 0.57
VPS28-215ENST00000531924 CACNA1FO60840 1977 aa18.61■□□□□ 0.57
VPS28-215ENST00000531924 DLGAP5Q15398 846 aa18.61■□□□□ 0.57
VPS28-215ENST00000531924 ZNF594Q96JF6 807 aaPredicted RBP18.61■□□□□ 0.57
VPS28-215ENST00000531924 SAGE1Q9NXZ1 904 aa18.61■□□□□ 0.57
VPS28-215ENST00000531924 POLR2AP24928 1970 aaKnown RBP18.61■□□□□ 0.57
VPS28-215ENST00000531924 UBE2Q2LH0YL09 131 aa18.6■□□□□ 0.57
VPS28-215ENST00000531924 SNAP23O00161 211 aa18.6■□□□□ 0.57
VPS28-215ENST00000531924 TRPA1O75762 1119 aa18.6■□□□□ 0.57
VPS28-215ENST00000531924 EPHA10Q5JZY3 1008 aa18.6■□□□□ 0.57
VPS28-215ENST00000531924 C15orf52Q6ZUT6 534 aaKnown RBP18.6■□□□□ 0.57
VPS28-215ENST00000531924 PSME4Q14997 1843 aa18.59■□□□□ 0.57
VPS28-215ENST00000531924 MYO1BO43795 1136 aa18.59■□□□□ 0.57
VPS28-215ENST00000531924 DGKZQ13574 1117 aa18.59■□□□□ 0.57
VPS28-215ENST00000531924 RASAL3Q86YV0 1011 aa18.59■□□□□ 0.57
VPS28-215ENST00000531924 RNF186Q9NXI6 227 aa18.59■□□□□ 0.57
VPS28-215ENST00000531924 E9PSI1 815 aa18.58■□□□□ 0.56
VPS28-215ENST00000531924 F8W031 263 aaPredicted RBP18.58■□□□□ 0.56
VPS28-215ENST00000531924 MOB2Q70IA6 237 aa18.58■□□□□ 0.56
VPS28-215ENST00000531924 ARMC9Q7Z3E5 817 aa18.58■□□□□ 0.56
VPS28-215ENST00000531924 CSRNP1Q96S65 589 aa18.58■□□□□ 0.56
VPS28-215ENST00000531924 MCOLN1Q9GZU1 580 aa18.58■□□□□ 0.56
VPS28-215ENST00000531924 IL1R1P14778 569 aa18.57■□□□□ 0.56
VPS28-215ENST00000531924 RBM5P52756 815 aaKnown RBP eCLIP18.57■□□□□ 0.56
VPS28-215ENST00000531924 PAPPA2Q9BXP8 1791 aa18.56■□□□□ 0.56
VPS28-215ENST00000531924 PRKG1Q13976 671 aa18.56■□□□□ 0.56
VPS28-215ENST00000531924 SUCLG2Q96I99 432 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms