RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 H3BM21 787 aa6.82□□□□□ -1.32
CD44-225ENST00000527326 MAN1A2O60476 641 aa6.82□□□□□ -1.32
CD44-225ENST00000527326 TUBB4AP04350 444 aa6.82□□□□□ -1.32
CD44-225ENST00000527326 BMP2P12643 396 aa6.82□□□□□ -1.32
CD44-225ENST00000527326 GMPRP36959 345 aa6.82□□□□□ -1.32
CD44-225ENST00000527326 PLA2G4AP47712 749 aa6.82□□□□□ -1.32
CD44-225ENST00000527326 ICA1Q05084 483 aa6.82□□□□□ -1.32
CD44-225ENST00000527326 ADCY2Q08462 1091 aa6.82□□□□□ -1.32
CD44-225ENST00000527326 TRAF1Q13077 416 aa6.82□□□□□ -1.32
CD44-225ENST00000527326 RGL3Q3MIN7 710 aa6.82□□□□□ -1.32
CD44-225ENST00000527326 CEP135Q66GS9 1140 aa6.82□□□□□ -1.32
CD44-225ENST00000527326 TMCO3Q6UWJ1 677 aa6.82□□□□□ -1.32
CD44-225ENST00000527326 TRMT44Q8IYL2 757 aaKnown RBP6.82□□□□□ -1.32
CD44-225ENST00000527326 GPKOWQ92917 476 aaPredicted RBP eCLIP6.82□□□□□ -1.32
CD44-225ENST00000527326 SMARCE1Q969G3 411 aa6.82□□□□□ -1.32
CD44-225ENST00000527326 MPHOSPH9Q99550 1183 aa6.82□□□□□ -1.32
CD44-225ENST00000527326 EIF3CQ99613 913 aaKnown RBP6.82□□□□□ -1.32
CD44-225ENST00000527326 KCNF1Q9H3M0 494 aa6.82□□□□□ -1.32
CD44-225ENST00000527326 ST7Q9NRC1 585 aa6.82□□□□□ -1.32
CD44-225ENST00000527326 SNRKQ9NRH2 765 aa6.82□□□□□ -1.32
CD44-225ENST00000527326 MAP4K5Q9Y4K4 846 aa6.82□□□□□ -1.32
CD44-225ENST00000527326 GPRASP1Q5JY77 1395 aa6.82□□□□□ -1.32
CD44-225ENST00000527326 EFCAB5A4FU69 1503 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 SPAG9O60271 1321 aaKnown RBP6.81□□□□□ -1.32
CD44-225ENST00000527326 PLB1Q6P1J6 1458 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 ADCY10Q96PN6 1610 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 IPO8O15397 1037 aaKnown RBP6.81□□□□□ -1.32
CD44-225ENST00000527326 SETSIPP0DME0 302 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 EIF5P55010 431 aaKnown RBP6.81□□□□□ -1.32
CD44-225ENST00000527326 RWDD2BP57060 319 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 FAM69CQ0P6D2 419 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 ELF2Q15723 593 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 CCDC96Q2M329 555 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 ERFEQ4G0M1 354 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 CCDC183Q5T5S1 534 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 CCDC30Q5VVM6 783 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 WWC2Q6AWC2 1192 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 PDXDC2PQ6P474 469 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 CCDC186Q7Z3E2 898 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.81□□□□□ -1.32
CD44-225ENST00000527326 GTF3C6Q969F1 213 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 MIEF2Q96C03 454 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 KIF2CQ99661 725 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 SH3GL3Q99963 347 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 UTP14AQ9BVJ6 771 aaKnown RBP6.81□□□□□ -1.32
CD44-225ENST00000527326 GNL3LQ9NVN8 582 aaKnown RBP6.81□□□□□ -1.32
CD44-225ENST00000527326 FKBPLQ9UIM3 349 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 ANAPC4Q9UJX5 808 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 COG6Q9Y2V7 657 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 CASKIN1Q8WXD9 1431 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 SYNMO15061 1565 aa6.81□□□□□ -1.32
CD44-225ENST00000527326 TCOF1Q13428 1488 aaKnown RBP6.8□□□□□ -1.32
CD44-225ENST00000527326 CCP110O43303 1012 aa6.8□□□□□ -1.32
CD44-225ENST00000527326 RAD21O60216 631 aa6.8□□□□□ -1.32
CD44-225ENST00000527326 NEMFO60524 1076 aa6.8□□□□□ -1.32
CD44-225ENST00000527326 AP1G2O75843 785 aa6.8□□□□□ -1.32
CD44-225ENST00000527326 ZRANB2O95218 330 aaKnown RBP eCLIP6.8□□□□□ -1.32
CD44-225ENST00000527326 GCFC2P16383 781 aaKnown RBP6.8□□□□□ -1.32
CD44-225ENST00000527326 RFC5P40937 340 aa6.8□□□□□ -1.32
CD44-225ENST00000527326 NEDD9Q14511 834 aa6.8□□□□□ -1.32
CD44-225ENST00000527326 CRYMQ14894 314 aa6.8□□□□□ -1.32
CD44-225ENST00000527326 WDR43Q15061 677 aaKnown RBP eCLIP6.8□□□□□ -1.32
CD44-225ENST00000527326 NR6A1Q15406 480 aa6.8□□□□□ -1.32
CD44-225ENST00000527326 PDCD2Q16342 344 aaPredicted RBP6.8□□□□□ -1.32
CD44-225ENST00000527326 TPD52L1Q16890 204 aaPredicted RBP6.8□□□□□ -1.32
CD44-225ENST00000527326 TTLL5Q6EMB2 1281 aa6.8□□□□□ -1.32
CD44-225ENST00000527326 TSHZ1Q6ZSZ6 1077 aa6.8□□□□□ -1.32
CD44-225ENST00000527326 TADA2BQ86TJ2 420 aa6.8□□□□□ -1.32
CD44-225ENST00000527326 TEX11Q8IYF3 940 aa6.8□□□□□ -1.32
CD44-225ENST00000527326 CCDC116Q8IYX3 515 aa6.8□□□□□ -1.32
CD44-225ENST00000527326 RTF1Q92541 710 aaKnown RBP6.8□□□□□ -1.32
CD44-225ENST00000527326 ARHGAP9Q9BRR9 750 aa6.8□□□□□ -1.32
CD44-225ENST00000527326 CFAP74Q9C0B2 1584 aa6.8□□□□□ -1.32
CD44-225ENST00000527326 TMX4Q9H1E5 349 aaPredicted RBP6.8□□□□□ -1.32
CD44-225ENST00000527326 IFT57Q9NWB7 429 aa6.8□□□□□ -1.32
CD44-225ENST00000527326 ZNF215Q9UL58 517 aaPredicted RBP6.8□□□□□ -1.32
CD44-225ENST00000527326 EMILIN1Q9Y6C2 1016 aa6.8□□□□□ -1.32
CD44-225ENST00000527326 ARHGEF12Q9NZN5 1544 aa6.8□□□□□ -1.32
CD44-225ENST00000527326 ATP10AO60312 1499 aa6.79□□□□□ -1.32
CD44-225ENST00000527326 MNAT1P51948 309 aa6.79□□□□□ -1.32
CD44-225ENST00000527326 GBP6Q6ZN66 633 aa6.79□□□□□ -1.32
CD44-225ENST00000527326 ZBTB33Q86T24 672 aa6.79□□□□□ -1.32
CD44-225ENST00000527326 LINC00528Q8N1L1 170 aa6.79□□□□□ -1.32
CD44-225ENST00000527326 MEIOBQ8N635 442 aa6.79□□□□□ -1.32
CD44-225ENST00000527326 KLHL23Q8NBE8 558 aa6.79□□□□□ -1.32
CD44-225ENST00000527326 DDX11Q96FC9 970 aa6.79□□□□□ -1.32
CD44-225ENST00000527326 FAXDC2Q96IV6 333 aa6.79□□□□□ -1.32
CD44-225ENST00000527326 C16orf45Q96MC5 204 aaPredicted RBP6.79□□□□□ -1.32
CD44-225ENST00000527326 KCND1Q9NSA2 647 aa6.79□□□□□ -1.32
CD44-225ENST00000527326 TRAK1Q9UPV9 953 aa6.79□□□□□ -1.32
CD44-225ENST00000527326 RPS6KL1Q9Y6S9 549 aa6.79□□□□□ -1.32
CD44-225ENST00000527326 POLR3GO15318 223 aaPredicted RBP6.78□□□□□ -1.32
CD44-225ENST00000527326 BCAR3O75815 825 aa6.78□□□□□ -1.32
CD44-225ENST00000527326 NEBLO76041 1014 aa6.78□□□□□ -1.32
CD44-225ENST00000527326 OAS2P29728 719 aaKnown RBP6.78□□□□□ -1.32
CD44-225ENST00000527326 ELF1P32519 619 aa6.78□□□□□ -1.32
CD44-225ENST00000527326 LMAN1P49257 510 aa6.78□□□□□ -1.32
CD44-225ENST00000527326 ST5P78524 1137 aa6.78□□□□□ -1.32
CD44-225ENST00000527326 NAA30Q147X3 362 aaPredicted RBP6.78□□□□□ -1.32
CD44-225ENST00000527326 RBBP5Q15291 538 aaKnown RBP6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms