RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 LINC00116Q8NCU8 138 aa18.97■□□□□ 0.63
USH1C-204ENST00000526313 GPT2Q8TD30 523 aa18.97■□□□□ 0.63
USH1C-204ENST00000526313 ARAP2Q8WZ64 1704 aa18.97■□□□□ 0.63
USH1C-204ENST00000526313 THSD7AQ9UPZ6 1657 aa18.97■□□□□ 0.63
USH1C-204ENST00000526313 CNTNAP4Q9C0A0 1308 aa18.97■□□□□ 0.63
USH1C-204ENST00000526313 HMGB1P09429 215 aaKnown RBP18.97■□□□□ 0.63
USH1C-204ENST00000526313 ARID4AP29374 1257 aaPredicted RBP18.97■□□□□ 0.63
USH1C-204ENST00000526313 NIP7Q9Y221 180 aaKnown RBP eCLIP18.97■□□□□ 0.63
USH1C-204ENST00000526313 PUM3Q15397 648 aaKnown RBP18.96■□□□□ 0.63
USH1C-204ENST00000526313 GAS2L3Q86XJ1 694 aa18.96■□□□□ 0.63
USH1C-204ENST00000526313 NECAB1Q8N987 351 aa18.96■□□□□ 0.63
USH1C-204ENST00000526313 LPIN2Q92539 896 aa18.96■□□□□ 0.63
USH1C-204ENST00000526313 APPBP2Q92624 585 aa18.96■□□□□ 0.63
USH1C-204ENST00000526313 TCEANC2Q96MN5 208 aa18.96■□□□□ 0.63
USH1C-204ENST00000526313 ZNF652Q9Y2D9 606 aa18.96■□□□□ 0.63
USH1C-204ENST00000526313 MYH7P12883 1935 aa18.96■□□□□ 0.63
USH1C-204ENST00000526313 FOXP2O15409 715 aa18.95■□□□□ 0.62
USH1C-204ENST00000526313 TMEM87AQ8NBN3 555 aa18.95■□□□□ 0.62
USH1C-204ENST00000526313 ZNF445P59923 1031 aa18.95■□□□□ 0.62
USH1C-204ENST00000526313 EXOSC10Q01780 885 aaKnown RBP18.95■□□□□ 0.62
USH1C-204ENST00000526313 CCDC152Q4G0S7 254 aa18.95■□□□□ 0.62
USH1C-204ENST00000526313 BRPF3Q9ULD4 1205 aa18.95■□□□□ 0.62
USH1C-204ENST00000526313 MTMR6Q9Y217 621 aa18.95■□□□□ 0.62
USH1C-204ENST00000526313 LAMA4Q16363 1823 aa18.95■□□□□ 0.62
USH1C-204ENST00000526313 UQCRFS1P1P0C7P4 283 aa18.94■□□□□ 0.62
USH1C-204ENST00000526313 RC3H1Q5TC82 1133 aaKnown RBP18.94■□□□□ 0.62
USH1C-204ENST00000526313 CCDC102BQ68D86 513 aa18.94■□□□□ 0.62
USH1C-204ENST00000526313 PI16Q6UXB8 463 aa18.94■□□□□ 0.62
USH1C-204ENST00000526313 AGXT2Q9BYV1 514 aa18.94■□□□□ 0.62
USH1C-204ENST00000526313 F13A1P00488 732 aa18.94■□□□□ 0.62
USH1C-204ENST00000526313 TTF1Q15361 905 aaPredicted RBP18.94■□□□□ 0.62
USH1C-204ENST00000526313 DHX32Q7L7V1 743 aaKnown RBP18.94■□□□□ 0.62
USH1C-204ENST00000526313 GRPEL1Q9HAV7 217 aa18.94■□□□□ 0.62
USH1C-204ENST00000526313 SEC31BQ9NQW1 1179 aa18.94■□□□□ 0.62
USH1C-204ENST00000526313 MBD3O95983 291 aa18.93■□□□□ 0.62
USH1C-204ENST00000526313 USP21Q9UK80 565 aa18.93■□□□□ 0.62
USH1C-204ENST00000526313 PHKA1P46020 1223 aa18.92■□□□□ 0.62
USH1C-204ENST00000526313 Q6ZUG5 572 aa18.92■□□□□ 0.62
USH1C-204ENST00000526313 PTF1AQ7RTS3 328 aa18.92■□□□□ 0.62
USH1C-204ENST00000526313 FBXL16Q8N461 479 aa18.92■□□□□ 0.62
USH1C-204ENST00000526313 ATRNO75882 1429 aa18.92■□□□□ 0.62
USH1C-204ENST00000526313 E7EWF7 191 aa18.92■□□□□ 0.62
USH1C-204ENST00000526313 ADD2P35612 726 aa18.92■□□□□ 0.62
USH1C-204ENST00000526313 ZSCAN25Q6NSZ9 544 aa18.92■□□□□ 0.62
USH1C-204ENST00000526313 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.92■□□□□ 0.62
USH1C-204ENST00000526313 PUS7LQ9H0K6 701 aaKnown RBP18.92■□□□□ 0.62
USH1C-204ENST00000526313 CTNNA3Q9UI47 895 aa18.92■□□□□ 0.62
USH1C-204ENST00000526313 NHSQ6T4R5 1651 aa18.91■□□□□ 0.62
USH1C-204ENST00000526313 FAM177BA6PVY3 158 aa18.91■□□□□ 0.62
USH1C-204ENST00000526313 UBE3CQ15386 1083 aa18.91■□□□□ 0.62
USH1C-204ENST00000526313 CAVIN1Q6NZI2 390 aaKnown RBP18.91■□□□□ 0.62
USH1C-204ENST00000526313 GTF3C6Q969F1 213 aa18.91■□□□□ 0.62
USH1C-204ENST00000526313 MPHOSPH8Q99549 860 aa18.91■□□□□ 0.62
USH1C-204ENST00000526313 ATP6V1DQ9Y5K8 247 aa18.91■□□□□ 0.62
USH1C-204ENST00000526313 TCHHQ07283 1943 aa18.91■□□□□ 0.62
USH1C-204ENST00000526313 A0A0G2JLW4 131 aa18.91■□□□□ 0.62
USH1C-204ENST00000526313 WASHC4Q2M389 1173 aa18.91■□□□□ 0.62
USH1C-204ENST00000526313 ZSCAN23Q3MJ62 389 aa18.91■□□□□ 0.62
USH1C-204ENST00000526313 PIH1D3Q9NQM4 214 aaKnown RBP18.91■□□□□ 0.62
USH1C-204ENST00000526313 NSFL1CQ9UNZ2 370 aaKnown RBP18.91■□□□□ 0.62
USH1C-204ENST00000526313 BTAF1O14981 1849 aa18.9■□□□□ 0.62
USH1C-204ENST00000526313 SLC5A1P13866 664 aa18.9■□□□□ 0.62
USH1C-204ENST00000526313 SF3B3Q15393 1217 aaKnown RBP18.9■□□□□ 0.62
USH1C-204ENST00000526313 SLC10A5Q5PT55 438 aa18.9■□□□□ 0.62
USH1C-204ENST00000526313 HELBQ8NG08 1087 aaPredicted RBP18.9■□□□□ 0.62
USH1C-204ENST00000526313 SCN7AQ01118 1682 aa18.9■□□□□ 0.62
USH1C-204ENST00000526313 PDCP20941 246 aa18.89■□□□□ 0.62
USH1C-204ENST00000526313 USP48Q86UV5 1035 aa18.89■□□□□ 0.62
USH1C-204ENST00000526313 BCL2L12Q9HB09 334 aa18.89■□□□□ 0.62
USH1C-204ENST00000526313 RPS6KA4O75676 772 aa18.89■□□□□ 0.61
USH1C-204ENST00000526313 FGAP02671 866 aa18.89■□□□□ 0.61
USH1C-204ENST00000526313 NCLP19338 710 aaKnown RBP18.89■□□□□ 0.61
USH1C-204ENST00000526313 IGHMBP2P38935 993 aaKnown RBP18.89■□□□□ 0.61
USH1C-204ENST00000526313 TTLL5Q6EMB2 1281 aa18.89■□□□□ 0.61
USH1C-204ENST00000526313 GPAA1O43292 621 aa18.88■□□□□ 0.61
USH1C-204ENST00000526313 PFKFB2O60825 505 aa18.88■□□□□ 0.61
USH1C-204ENST00000526313 LARP1BQ659C4 914 aaKnown RBP18.88■□□□□ 0.61
USH1C-204ENST00000526313 TMEM63CQ9P1W3 806 aa18.88■□□□□ 0.61
USH1C-204ENST00000526313 NARFQ9UHQ1 456 aa18.88■□□□□ 0.61
USH1C-204ENST00000526313 TCRBV5S4A2TA0A5A2 114 aa18.88■□□□□ 0.61
USH1C-204ENST00000526313 MYO5AQ9Y4I1 1855 aaKnown RBP18.87■□□□□ 0.61
USH1C-204ENST00000526313 ONECUT3O60422 494 aaPredicted RBP18.87■□□□□ 0.61
USH1C-204ENST00000526313 EVCP57679 992 aa18.87■□□□□ 0.61
USH1C-204ENST00000526313 ERFEQ4G0M1 354 aa18.87■□□□□ 0.61
USH1C-204ENST00000526313 SLC9C2Q5TAH2 1124 aa18.87■□□□□ 0.61
USH1C-204ENST00000526313 SPATA5Q8NB90 893 aa18.87■□□□□ 0.61
USH1C-204ENST00000526313 BRF1Q92994 677 aa18.87■□□□□ 0.61
USH1C-204ENST00000526313 LLPHQ9BRT6 129 aaKnown RBP18.87■□□□□ 0.61
USH1C-204ENST00000526313 DOCK2Q92608 1830 aa18.87■□□□□ 0.61
USH1C-204ENST00000526313 KCNQ4P56696 695 aa18.86■□□□□ 0.61
USH1C-204ENST00000526313 IMMTQ16891 758 aaKnown RBP18.86■□□□□ 0.61
USH1C-204ENST00000526313 SMARCC2Q8TAQ2 1214 aa18.86■□□□□ 0.61
USH1C-204ENST00000526313 CDC5LQ99459 802 aaKnown RBP18.86■□□□□ 0.61
USH1C-204ENST00000526313 PANK2Q9BZ23 570 aa18.86■□□□□ 0.61
USH1C-204ENST00000526313 RBM27Q9P2N5 1060 aaKnown RBP18.86■□□□□ 0.61
USH1C-204ENST00000526313 CNPY2Q9Y2B0 182 aa18.86■□□□□ 0.61
USH1C-204ENST00000526313 COL4A1P02462 1669 aa18.86■□□□□ 0.61
USH1C-204ENST00000526313 GADD45BO75293 160 aaPredicted RBP18.86■□□□□ 0.61
USH1C-204ENST00000526313 PDE6AP16499 860 aa18.86■□□□□ 0.61
USH1C-204ENST00000526313 SNAP23O00161 211 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms