RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 MRVI1Q9Y6F6 885 aa25■■□□□ 1.59
VPS28-205ENST00000526204 PLCB2Q00722 1185 aa25■■□□□ 1.59
VPS28-205ENST00000526204 BICD2Q8TD16 824 aa25■■□□□ 1.59
VPS28-205ENST00000526204 STRN4Q9NRL3 753 aa25■■□□□ 1.59
VPS28-205ENST00000526204 ABCC12Q96J65 1359 aa24.99■■□□□ 1.59
VPS28-205ENST00000526204 PTPDC1A2A3K4 754 aa24.99■■□□□ 1.59
VPS28-205ENST00000526204 FKBP4Q02790 459 aaKnown RBP eCLIP24.99■■□□□ 1.59
VPS28-205ENST00000526204 HSP90AA2PQ14568 343 aaPredicted RBP24.99■■□□□ 1.59
VPS28-205ENST00000526204 ZBTB38Q8NAP3 1195 aaPredicted RBP24.99■■□□□ 1.59
VPS28-205ENST00000526204 PGBD1Q96JS3 809 aa24.99■■□□□ 1.59
VPS28-205ENST00000526204 GOLGA6L6A8MZA4 724 aa24.98■■□□□ 1.59
VPS28-205ENST00000526204 CSF1RP07333 972 aa24.98■■□□□ 1.59
VPS28-205ENST00000526204 XAGE2Q96GT9 111 aa24.98■■□□□ 1.59
VPS28-205ENST00000526204 TAF7LQ5H9L4 462 aa24.98■■□□□ 1.59
VPS28-205ENST00000526204 OSBP2Q969R2 916 aa24.98■■□□□ 1.59
VPS28-205ENST00000526204 XIRP1Q702N8 1843 aaKnown RBP24.97■■□□□ 1.59
VPS28-205ENST00000526204 M0R2C6 588 aa24.97■■□□□ 1.59
VPS28-205ENST00000526204 CTDNEP1O95476 244 aa24.97■■□□□ 1.59
VPS28-205ENST00000526204 STARD3NLO95772 234 aa24.97■■□□□ 1.59
VPS28-205ENST00000526204 IFIT5Q13325 482 aaKnown RBP24.97■■□□□ 1.59
VPS28-205ENST00000526204 SASS6Q6UVJ0 657 aa24.97■■□□□ 1.59
VPS28-205ENST00000526204 NR1I2O75469 434 aa24.97■■□□□ 1.59
VPS28-205ENST00000526204 CAVIN2O95810 425 aa24.97■■□□□ 1.59
VPS28-205ENST00000526204 PDIA3P30101 505 aaKnown RBP24.97■■□□□ 1.59
VPS28-205ENST00000526204 EVCP57679 992 aa24.96■■□□□ 1.59
VPS28-205ENST00000526204 CKAP2LQ8IYA6 745 aa24.96■■□□□ 1.59
VPS28-205ENST00000526204 TTC12Q9H892 705 aaPredicted RBP24.96■■□□□ 1.59
VPS28-205ENST00000526204 ZNF330Q9Y3S2 320 aaPredicted RBP24.96■■□□□ 1.59
VPS28-205ENST00000526204 SALL1Q9NSC2 1324 aa24.96■■□□□ 1.59
VPS28-205ENST00000526204 SHANK3Q9BYB0 1731 aa24.96■■□□□ 1.59
VPS28-205ENST00000526204 AP5Z1O43299 807 aa24.95■■□□□ 1.59
VPS28-205ENST00000526204 IMMTQ16891 758 aaKnown RBP24.95■■□□□ 1.59
VPS28-205ENST00000526204 ZNF830Q96NB3 372 aaPredicted RBP24.95■■□□□ 1.59
VPS28-205ENST00000526204 RCOR1Q9UKL0 485 aa24.95■■□□□ 1.59
VPS28-205ENST00000526204 NOLC1Q14978 699 aaKnown RBP eCLIP24.95■■□□□ 1.58
VPS28-205ENST00000526204 FAM89AQ96GI7 184 aa24.95■■□□□ 1.58
VPS28-205ENST00000526204 ZNF396Q96N95 335 aaPredicted RBP24.95■■□□□ 1.58
VPS28-205ENST00000526204 ADD1P35611 737 aaKnown RBP24.94■■□□□ 1.58
VPS28-205ENST00000526204 CCT2P78371 535 aaKnown RBP24.94■■□□□ 1.58
VPS28-205ENST00000526204 WASHC4Q2M389 1173 aa24.94■■□□□ 1.58
VPS28-205ENST00000526204 CDHR2Q9BYE9 1310 aa24.94■■□□□ 1.58
VPS28-205ENST00000526204 ADORA1P30542 326 aa24.94■■□□□ 1.58
VPS28-205ENST00000526204 ANO6Q4KMQ2 910 aa24.94■■□□□ 1.58
VPS28-205ENST00000526204 GIGYF2Q6Y7W6 1299 aaKnown RBP24.94■■□□□ 1.58
VPS28-205ENST00000526204 DNAJC10Q8IXB1 793 aa24.94■■□□□ 1.58
VPS28-205ENST00000526204 APPBP2Q92624 585 aa24.94■■□□□ 1.58
VPS28-205ENST00000526204 MAP3K15Q6ZN16 1313 aa24.93■■□□□ 1.58
VPS28-205ENST00000526204 ZNF335Q9H4Z2 1342 aaPredicted RBP24.93■■□□□ 1.58
VPS28-205ENST00000526204 MPNDQ8N594 471 aa24.93■■□□□ 1.58
VPS28-205ENST00000526204 LAMA4Q16363 1823 aa24.93■■□□□ 1.58
VPS28-205ENST00000526204 A0A0G2JLW4 131 aa24.92■■□□□ 1.58
VPS28-205ENST00000526204 PIGBQ92521 554 aa24.92■■□□□ 1.58
VPS28-205ENST00000526204 CBX8Q9HC52 389 aa24.92■■□□□ 1.58
VPS28-205ENST00000526204 SPTLC3Q9NUV7 552 aa24.92■■□□□ 1.58
VPS28-205ENST00000526204 ASAP1Q9ULH1 1129 aa24.92■■□□□ 1.58
VPS28-205ENST00000526204 NAP1L2Q9ULW6 460 aaPredicted RBP24.92■■□□□ 1.58
VPS28-205ENST00000526204 UQCRHLA0A096LP55 91 aa24.92■■□□□ 1.58
VPS28-205ENST00000526204 CTAGE5O15320 804 aa24.92■■□□□ 1.58
VPS28-205ENST00000526204 UQCRHP07919 91 aa24.92■■□□□ 1.58
VPS28-205ENST00000526204 HSP90AB3PQ58FF7 597 aa24.92■■□□□ 1.58
VPS28-205ENST00000526204 TTLL5Q6EMB2 1281 aa24.92■■□□□ 1.58
VPS28-205ENST00000526204 LUZP1Q86V48 1076 aa24.91■■□□□ 1.58
VPS28-205ENST00000526204 NCOA5Q9HCD5 579 aaKnown RBP24.91■■□□□ 1.58
VPS28-205ENST00000526204 DHX16O60231 1041 aaKnown RBP24.91■■□□□ 1.58
VPS28-205ENST00000526204 DNTTIP2Q5QJE6 756 aaKnown RBP24.91■■□□□ 1.58
VPS28-205ENST00000526204 ZAP70P43403 619 aa24.9■■□□□ 1.58
VPS28-205ENST00000526204 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.9■■□□□ 1.582e-7■■■■□ 23.7
VPS28-205ENST00000526204 ABCA3Q99758 1704 aa24.9■■□□□ 1.58
VPS28-205ENST00000526204 DYNC1I1O14576 645 aa24.89■■□□□ 1.58
VPS28-205ENST00000526204 FGAP02671 866 aa24.89■■□□□ 1.58
VPS28-205ENST00000526204 ATP2B3Q16720 1220 aa24.89■■□□□ 1.58
VPS28-205ENST00000526204 CHST3Q7LGC8 479 aa24.89■■□□□ 1.58
VPS28-205ENST00000526204 TDRD7Q8NHU6 1098 aaKnown RBP24.89■■□□□ 1.58
VPS28-205ENST00000526204 RIPOR2Q9Y4F9 1068 aa24.89■■□□□ 1.58
VPS28-205ENST00000526204 FOXP2O15409 715 aa24.89■■□□□ 1.57
VPS28-205ENST00000526204 METTL24Q5JXM2 366 aa24.89■■□□□ 1.57
VPS28-205ENST00000526204 ZSCAN25Q6NSZ9 544 aa24.89■■□□□ 1.57
VPS28-205ENST00000526204 ZNF512BQ96KM6 892 aaPredicted RBP24.89■■□□□ 1.57
VPS28-205ENST00000526204 TOGARAM1Q9Y4F4 1720 aa24.89■■□□□ 1.57
VPS28-205ENST00000526204 CARMIL3Q8ND23 1372 aa24.89■■□□□ 1.57
VPS28-205ENST00000526204 ZNF165P49910 485 aa24.88■■□□□ 1.57
VPS28-205ENST00000526204 SCARF1Q14162 830 aa24.88■■□□□ 1.57
VPS28-205ENST00000526204 LDHAL6AQ6ZMR3 332 aa24.88■■□□□ 1.57
VPS28-205ENST00000526204 CCDC85AQ96PX6 553 aaPredicted RBP24.88■■□□□ 1.57
VPS28-205ENST00000526204 WDR19Q8NEZ3 1342 aa24.88■■□□□ 1.57
VPS28-205ENST00000526204 CEBPZQ03701 1054 aaKnown RBP24.88■■□□□ 1.57
VPS28-205ENST00000526204 NLRP10Q86W26 655 aa24.88■■□□□ 1.57
VPS28-205ENST00000526204 CCAR1Q8IX12 1150 aaKnown RBP24.88■■□□□ 1.57
VPS28-205ENST00000526204 PRIMPOLQ96LW4 560 aa24.88■■□□□ 1.57
VPS28-205ENST00000526204 CCDC73Q6ZRK6 1079 aa24.87■■□□□ 1.57
VPS28-205ENST00000526204 TTLL11Q8NHH1 800 aa24.87■■□□□ 1.57
VPS28-205ENST00000526204 NCOA7Q8NI08 942 aa24.87■■□□□ 1.57
VPS28-205ENST00000526204 ANKRD18BA2A2Z9 1011 aa24.86■■□□□ 1.57
VPS28-205ENST00000526204 ITGA6P23229 1130 aa24.86■■□□□ 1.57
VPS28-205ENST00000526204 TTF1Q15361 905 aaPredicted RBP24.86■■□□□ 1.57
VPS28-205ENST00000526204 ARHGAP30Q7Z6I6 1101 aaPredicted RBP24.86■■□□□ 1.57
VPS28-205ENST00000526204 KIAA1524Q8TCG1 905 aa24.86■■□□□ 1.57
VPS28-205ENST00000526204 USP28Q96RU2 1077 aa24.86■■□□□ 1.57
VPS28-205ENST00000526204 PUS7LQ9H0K6 701 aaKnown RBP24.86■■□□□ 1.57
VPS28-205ENST00000526204 PDCL3Q9H2J4 239 aa24.86■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms