RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 ATP2B4P23634 1241 aa12.83□□□□□ -0.36
VPS28-204ENST00000526054 CWF19L2Q2TBE0 894 aaKnown RBP12.83□□□□□ -0.36
VPS28-204ENST00000526054 RSBN1LQ6PCB5 846 aaPredicted RBP12.83□□□□□ -0.36
VPS28-204ENST00000526054 C2orf69Q8N8R5 385 aa12.83□□□□□ -0.36
VPS28-204ENST00000526054 AGBL3Q8NEM8 1001 aa12.83□□□□□ -0.36
VPS28-204ENST00000526054 DNAAF4Q8WXU2 420 aa12.83□□□□□ -0.36
VPS28-204ENST00000526054 PAPPA2Q9BXP8 1791 aa12.82□□□□□ -0.36
VPS28-204ENST00000526054 CASP8AP2Q9UKL3 1982 aa12.82□□□□□ -0.36
VPS28-204ENST00000526054 NEURL1BA8MQ27 555 aa12.82□□□□□ -0.36
VPS28-204ENST00000526054 RARSP54136 660 aaKnown RBP12.82□□□□□ -0.36
VPS28-204ENST00000526054 RGMBQ6NW40 437 aa12.82□□□□□ -0.36
VPS28-204ENST00000526054 UBE3BQ7Z3V4 1068 aa12.82□□□□□ -0.36
VPS28-204ENST00000526054 TTLL11Q8NHH1 800 aa12.82□□□□□ -0.36
VPS28-204ENST00000526054 GREM2Q9H772 168 aa12.82□□□□□ -0.36
VPS28-204ENST00000526054 ASTN2O75129 1339 aaPredicted RBP12.82□□□□□ -0.36
VPS28-204ENST00000526054 KIF16BQ96L93 1317 aa12.82□□□□□ -0.36
VPS28-204ENST00000526054 USP17L3A6NCW0 530 aa12.81□□□□□ -0.36
VPS28-204ENST00000526054 USP17L4A6NCW7 530 aa12.81□□□□□ -0.36
VPS28-204ENST00000526054 ZNF280AP59817 542 aaPredicted RBP12.81□□□□□ -0.36
VPS28-204ENST00000526054 ANGEL2Q5VTE6 544 aaKnown RBP12.81□□□□□ -0.36
VPS28-204ENST00000526054 USP17L1Q7RTZ2 530 aa12.81□□□□□ -0.36
VPS28-204ENST00000526054 PODNQ7Z5L7 613 aa12.81□□□□□ -0.36
VPS28-204ENST00000526054 CDCA5Q96FF9 252 aa12.81□□□□□ -0.36
VPS28-204ENST00000526054 BSDC1Q9NW68 430 aaPredicted RBP12.81□□□□□ -0.36
VPS28-204ENST00000526054 AKAP11Q9UKA4 1901 aa12.81□□□□□ -0.36
VPS28-204ENST00000526054 A0A1B0GUL6 1792 aa12.81□□□□□ -0.36
VPS28-204ENST00000526054 FAM155AB1AL88 458 aaPredicted RBP12.8□□□□□ -0.36
VPS28-204ENST00000526054 USP17L8P0C7I0 530 aa12.8□□□□□ -0.36
VPS28-204ENST00000526054 ZNF157P51786 506 aaPredicted RBP12.8□□□□□ -0.36
VPS28-204ENST00000526054 SCARF1Q14162 830 aa12.8□□□□□ -0.36
VPS28-204ENST00000526054 CCDC102AQ96A19 550 aa12.8□□□□□ -0.36
VPS28-204ENST00000526054 ZIC5Q96T25 663 aa12.8□□□□□ -0.36
VPS28-204ENST00000526054 MYOZ2Q9NPC6 264 aa12.8□□□□□ -0.36
VPS28-204ENST00000526054 MINPP1Q9UNW1 487 aa12.8□□□□□ -0.36
VPS28-204ENST00000526054 F6X3S4 739 aa12.79□□□□□ -0.36
VPS28-204ENST00000526054 IGHMBP2P38935 993 aaKnown RBP12.79□□□□□ -0.36
VPS28-204ENST00000526054 CCT4P50991 539 aaKnown RBP12.79□□□□□ -0.36
VPS28-204ENST00000526054 FAM161AQ3B820 660 aa12.79□□□□□ -0.36
VPS28-204ENST00000526054 LINS1Q8NG48 757 aa12.79□□□□□ -0.36
VPS28-204ENST00000526054 FBXW7Q969H0 707 aa12.79□□□□□ -0.36
VPS28-204ENST00000526054 GMLQ99445 158 aa12.79□□□□□ -0.36
VPS28-204ENST00000526054 PITPNM2Q9BZ72 1349 aa12.79□□□□□ -0.36
VPS28-204ENST00000526054 WTIPA6NIX2 430 aaPredicted RBP12.78□□□□□ -0.36
VPS28-204ENST00000526054 CCDC85CA6NKD9 419 aa12.78□□□□□ -0.36
VPS28-204ENST00000526054 H7C1W4 665 aa12.78□□□□□ -0.36
VPS28-204ENST00000526054 SLC10A3P09131 477 aa12.78□□□□□ -0.36
VPS28-204ENST00000526054 GCKRQ14397 625 aa12.78□□□□□ -0.36
VPS28-204ENST00000526054 SLC4A10Q6U841 1118 aa12.78□□□□□ -0.36
VPS28-204ENST00000526054 API5Q9BZZ5 524 aaKnown RBP12.78□□□□□ -0.36
VPS28-204ENST00000526054 MYO3BQ8WXR4 1341 aa12.78□□□□□ -0.36
VPS28-204ENST00000526054 IPO8O15397 1037 aaKnown RBP12.77□□□□□ -0.37
VPS28-204ENST00000526054 ITGA6P23229 1130 aa12.77□□□□□ -0.37
VPS28-204ENST00000526054 KIF23Q02241 960 aaPredicted RBP12.77□□□□□ -0.37
VPS28-204ENST00000526054 BEND3Q5T5X7 828 aa12.77□□□□□ -0.37
VPS28-204ENST00000526054 OGFOD1Q8N543 542 aa12.77□□□□□ -0.37
VPS28-204ENST00000526054 MPHOSPH8Q99549 860 aa12.77□□□□□ -0.37
VPS28-204ENST00000526054 PLA2G12BQ9BX93 195 aa12.77□□□□□ -0.37
VPS28-204ENST00000526054 SRCIN1Q9C0H9 1055 aa12.77□□□□□ -0.37
VPS28-204ENST00000526054 MCOLN1Q9GZU1 580 aa12.77□□□□□ -0.37
VPS28-204ENST00000526054 COA1Q9GZY4 146 aa12.77□□□□□ -0.37
VPS28-204ENST00000526054 SAGE1Q9NXZ1 904 aa12.77□□□□□ -0.37
VPS28-204ENST00000526054 NOB1Q9ULX3 412 aaKnown RBP12.77□□□□□ -0.37
VPS28-204ENST00000526054 LEMD3Q9Y2U8 911 aa12.77□□□□□ -0.37
VPS28-204ENST00000526054 BCAR3O75815 825 aa12.76□□□□□ -0.37
VPS28-204ENST00000526054 ALDH1L1O75891 902 aa12.76□□□□□ -0.37
VPS28-204ENST00000526054 FKBP1BP68106 108 aa12.76□□□□□ -0.37
VPS28-204ENST00000526054 DGKZQ13574 1117 aa12.76□□□□□ -0.37
VPS28-204ENST00000526054 DACT2Q5SW24 774 aa12.76□□□□□ -0.37
VPS28-204ENST00000526054 STRIP1Q5VSL9 837 aa12.76□□□□□ -0.37
VPS28-204ENST00000526054 ARHGAP45Q92619 1136 aa12.76□□□□□ -0.37
VPS28-204ENST00000526054 MXD3Q9BW11 206 aa12.76□□□□□ -0.37
VPS28-204ENST00000526054 ANKRD2Q9GZV1 360 aa12.76□□□□□ -0.37
VPS28-204ENST00000526054 ZNF804BA4D1E1 1349 aa12.76□□□□□ -0.37
VPS28-204ENST00000526054 KLRK1P26718 216 aa12.75□□□□□ -0.37
VPS28-204ENST00000526054 KCNJ4P48050 445 aa12.75□□□□□ -0.37
VPS28-204ENST00000526054 CASP7P55210 303 aa12.75□□□□□ -0.37
VPS28-204ENST00000526054 NBPF9Q3BBW0 867 aa12.75□□□□□ -0.37
VPS28-204ENST00000526054 ECM29Q5VYK3 1845 aa12.75□□□□□ -0.37
VPS28-204ENST00000526054 TXNRD3Q86VQ6 643 aa12.75□□□□□ -0.37
VPS28-204ENST00000526054 RASAL3Q86YV0 1011 aa12.75□□□□□ -0.37
VPS28-204ENST00000526054 FRAT1Q92837 279 aaPredicted RBP12.75□□□□□ -0.37
VPS28-204ENST00000526054 SCAF8Q9UPN6 1271 aaKnown RBP12.75□□□□□ -0.37
VPS28-204ENST00000526054 SASH1O94885 1247 aa12.74□□□□□ -0.37
VPS28-204ENST00000526054 ZKSCAN2Q63HK3 967 aa12.74□□□□□ -0.37
VPS28-204ENST00000526054 RNF186Q9NXI6 227 aa12.74□□□□□ -0.37
VPS28-204ENST00000526054 ANKRD18BA2A2Z9 1011 aa12.73□□□□□ -0.37
VPS28-204ENST00000526054 WNT10BO00744 389 aa12.73□□□□□ -0.37
VPS28-204ENST00000526054 TRPA1O75762 1119 aa12.73□□□□□ -0.37
VPS28-204ENST00000526054 CSF1RP07333 972 aa12.73□□□□□ -0.37
VPS28-204ENST00000526054 NF2P35240 595 aa12.73□□□□□ -0.37
VPS28-204ENST00000526054 CHRNDQ07001 517 aa12.73□□□□□ -0.37
VPS28-204ENST00000526054 TTLL12Q14166 644 aaPredicted RBP12.73□□□□□ -0.37
VPS28-204ENST00000526054 ATF7IPQ6VMQ6 1270 aa12.73□□□□□ -0.37
VPS28-204ENST00000526054 KIAA0825Q8IV33 1275 aa12.73□□□□□ -0.37
VPS28-204ENST00000526054 C9orf78Q9NZ63 289 aaPredicted RBP12.73□□□□□ -0.37
VPS28-204ENST00000526054 RCAN3Q9UKA8 241 aa12.73□□□□□ -0.37
VPS28-204ENST00000526054 CHMP3Q9Y3E7 222 aa12.73□□□□□ -0.37
VPS28-204ENST00000526054 GRM8O00222 908 aa12.72□□□□□ -0.37
VPS28-204ENST00000526054 MMP14P50281 582 aa12.72□□□□□ -0.37
VPS28-204ENST00000526054 GTF2IP78347 998 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 107.7 ms