RNA–Protein interactions for RNA: ENST00000524317.1

SCUBE2-208, Transcript of signal peptide, CUB domain and EGF like domain containing 2, human

TSL 2

Gene SCUBE2, Length 2,322 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCUBE2-208	ENST00000524317	SEC62	Q99442	399 aa	Known RBP	13.93	□□□□□ -0.18
SCUBE2-208	ENST00000524317	GREM2	Q9H772	168 aa		13.93	□□□□□ -0.18
SCUBE2-208	ENST00000524317	CCDC87	Q9NVE4	849 aa		13.93	□□□□□ -0.18
SCUBE2-208	ENST00000524317	AK9	Q5TCS8	1911 aa		13.93	□□□□□ -0.18
SCUBE2-208	ENST00000524317	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.93	□□□□□ -0.18
SCUBE2-208	ENST00000524317	ITGA6	P23229	1130 aa		13.93	□□□□□ -0.18
SCUBE2-208	ENST00000524317	CRKL	P46109	303 aa	Known RBP	13.93	□□□□□ -0.18
SCUBE2-208	ENST00000524317	MCMDC2	Q4G0Z9	681 aa		13.93	□□□□□ -0.18
SCUBE2-208	ENST00000524317	USPL1	Q5W0Q7	1092 aa		13.93	□□□□□ -0.18
SCUBE2-208	ENST00000524317	PARP9	Q8IXQ6	854 aa		13.93	□□□□□ -0.18
SCUBE2-208	ENST00000524317	SGIP1	Q9BQI5	828 aa		13.93	□□□□□ -0.18
SCUBE2-208	ENST00000524317	AKAP2	Q9Y2D5	859 aa		13.93	□□□□□ -0.18
SCUBE2-208	ENST00000524317	ESPN	B1AK53	854 aa		13.92	□□□□□ -0.18
SCUBE2-208	ENST00000524317	IFIT1	P09914	478 aa	Known RBP	13.92	□□□□□ -0.18
SCUBE2-208	ENST00000524317	PSMA5	P28066	241 aa		13.92	□□□□□ -0.18
SCUBE2-208	ENST00000524317	ITPK1	Q13572	414 aa		13.92	□□□□□ -0.18
SCUBE2-208	ENST00000524317	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	13.92	□□□□□ -0.18
SCUBE2-208	ENST00000524317	TAF6L	Q9Y6J9	622 aa		13.92	□□□□□ -0.18
SCUBE2-208	ENST00000524317	PALLD	Q8WX93	1383 aa		13.92	□□□□□ -0.18
SCUBE2-208	ENST00000524317	WNK3	Q9BYP7	1800 aa		13.92	□□□□□ -0.18
SCUBE2-208	ENST00000524317	FSD2	A1L4K1	749 aa		13.92	□□□□□ -0.18
SCUBE2-208	ENST00000524317	ADORA1	P30542	326 aa		13.92	□□□□□ -0.18
SCUBE2-208	ENST00000524317	COL9A3	Q14050	684 aa	Predicted RBP	13.92	□□□□□ -0.18
SCUBE2-208	ENST00000524317	CCDC129	Q6ZRS4	1044 aa		13.92	□□□□□ -0.18
SCUBE2-208	ENST00000524317	HMG20B	Q9P0W2	317 aa		13.92	□□□□□ -0.18
SCUBE2-208	ENST00000524317	RIPOR2	Q9Y4F9	1068 aa		13.92	□□□□□ -0.18
SCUBE2-208	ENST00000524317	SH3TC1	Q8TE82	1336 aa		13.92	□□□□□ -0.18
SCUBE2-208	ENST00000524317	KCNQ2	O43526	872 aa		13.91	□□□□□ -0.18
SCUBE2-208	ENST00000524317	TSGA10IP	Q3SY00	556 aa		13.91	□□□□□ -0.18
SCUBE2-208	ENST00000524317	TICAM2	Q86XR7	235 aa		13.91	□□□□□ -0.18
SCUBE2-208	ENST00000524317	XAGE2	Q96GT9	111 aa		13.91	□□□□□ -0.18
SCUBE2-208	ENST00000524317	DOT1L	Q8TEK3	1739 aa		13.91	□□□□□ -0.18
SCUBE2-208	ENST00000524317	ANKRD18B	A2A2Z9	1011 aa		13.91	□□□□□ -0.18
SCUBE2-208	ENST00000524317	LARGE1	O95461	756 aa		13.91	□□□□□ -0.18
SCUBE2-208	ENST00000524317	NCL	P19338	710 aa	Known RBP	13.91	□□□□□ -0.18
SCUBE2-208	ENST00000524317	FAM98C	Q17RN3	349 aa	Known RBP	13.91	□□□□□ -0.18
SCUBE2-208	ENST00000524317	DCAF8	Q5TAQ9	597 aa		13.91	□□□□□ -0.18
SCUBE2-208	ENST00000524317	LDHAL6A	Q6ZMR3	332 aa		13.91	□□□□□ -0.18
SCUBE2-208	ENST00000524317	SMAP1	Q8IYB5	467 aa	Predicted RBP	13.91	□□□□□ -0.18
SCUBE2-208	ENST00000524317	LMBRD1	Q9NUN5	540 aa		13.91	□□□□□ -0.18
SCUBE2-208	ENST00000524317	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.9	□□□□□ -0.18
SCUBE2-208	ENST00000524317	UBAP1L	F5GYI3	381 aa		13.9	□□□□□ -0.18
SCUBE2-208	ENST00000524317	PDE8A	O60658	829 aa		13.9	□□□□□ -0.18
SCUBE2-208	ENST00000524317	SLFNL1	Q499Z3	407 aa		13.9	□□□□□ -0.18
SCUBE2-208	ENST00000524317	CCDC158	Q5M9N0	1113 aa		13.9	□□□□□ -0.18
SCUBE2-208	ENST00000524317	C8orf37	Q96NL8	207 aa		13.9	□□□□□ -0.18
SCUBE2-208	ENST00000524317	RIC1	Q4ADV7	1423 aa		13.9	□□□□□ -0.18
SCUBE2-208	ENST00000524317	KLHL40	Q2TBA0	621 aa		13.9	□□□□□ -0.18
SCUBE2-208	ENST00000524317	METTL24	Q5JXM2	366 aa		13.9	□□□□□ -0.18
SCUBE2-208	ENST00000524317	CHAMP1	Q96JM3	812 aa		13.9	□□□□□ -0.18
SCUBE2-208	ENST00000524317	HELLS	Q9NRZ9	838 aa		13.9	□□□□□ -0.18
SCUBE2-208	ENST00000524317	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.9	□□□□□ -0.18
SCUBE2-208	ENST00000524317	CAMTA2	O94983	1202 aa		13.89	□□□□□ -0.19
SCUBE2-208	ENST00000524317	TTC39A	Q5SRH9	613 aa		13.89	□□□□□ -0.19
SCUBE2-208	ENST00000524317	ZMYM1	Q5SVZ6	1142 aa		13.89	□□□□□ -0.19
SCUBE2-208	ENST00000524317	GORAB	Q5T7V8	394 aa		13.89	□□□□□ -0.19
SCUBE2-208	ENST00000524317	SUSD4	Q5VX71	490 aa		13.89	□□□□□ -0.19
SCUBE2-208	ENST00000524317	BLOC1S2	Q6QNY1	142 aa		13.89	□□□□□ -0.19
SCUBE2-208	ENST00000524317	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.89	□□□□□ -0.19
SCUBE2-208	ENST00000524317	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.89	□□□□□ -0.19
SCUBE2-208	ENST00000524317	KIAA1522	Q9P206	1035 aa	Predicted RBP	13.89	□□□□□ -0.19
SCUBE2-208	ENST00000524317	DDX49	Q9Y6V7	483 aa	Known RBP	13.89	□□□□□ -0.19
SCUBE2-208	ENST00000524317	RPS6KB1	P23443	525 aa		13.89	□□□□□ -0.19
SCUBE2-208	ENST00000524317	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
SCUBE2-208	ENST00000524317	VPS72	Q15906	364 aa		13.89	□□□□□ -0.19
SCUBE2-208	ENST00000524317	SMARCC1	Q92922	1105 aa	Predicted RBP	13.89	□□□□□ -0.19
SCUBE2-208	ENST00000524317	NGLY1	Q96IV0	654 aa		13.89	□□□□□ -0.19
SCUBE2-208	ENST00000524317	CNNM1	Q9NRU3	951 aa		13.89	□□□□□ -0.19
SCUBE2-208	ENST00000524317	BCL9L	Q86UU0	1499 aa		13.88	□□□□□ -0.19
SCUBE2-208	ENST00000524317	ATP2B3	Q16720	1220 aa		13.88	□□□□□ -0.19
SCUBE2-208	ENST00000524317	ME3	Q16798	604 aa		13.88	□□□□□ -0.19
SCUBE2-208	ENST00000524317	CCDC83	Q8IWF9	413 aa		13.88	□□□□□ -0.19
SCUBE2-208	ENST00000524317	VGLL2	Q8N8G2	317 aa		13.88	□□□□□ -0.19
SCUBE2-208	ENST00000524317	TPCN1	Q9ULQ1	816 aa		13.88	□□□□□ -0.19
SCUBE2-208	ENST00000524317	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	13.88	□□□□□ -0.19
SCUBE2-208	ENST00000524317	RNF113A	O15541	343 aa	Known RBP	13.87	□□□□□ -0.19
SCUBE2-208	ENST00000524317	ST3GAL1	Q11201	340 aa		13.87	□□□□□ -0.19
SCUBE2-208	ENST00000524317	SCARF1	Q14162	830 aa		13.87	□□□□□ -0.19
SCUBE2-208	ENST00000524317	KRT32	Q14532	448 aa		13.87	□□□□□ -0.19
SCUBE2-208	ENST00000524317	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.87	□□□□□ -0.19
SCUBE2-208	ENST00000524317	WDR33	Q9C0J8	1336 aa	Known RBP	13.87	□□□□□ -0.19
SCUBE2-208	ENST00000524317	PRPF40A	O75400	957 aa	Known RBP	13.87	□□□□□ -0.19
SCUBE2-208	ENST00000524317	CYP21A2	P08686	494 aa		13.87	□□□□□ -0.19
SCUBE2-208	ENST00000524317	MRE11	P49959	708 aa		13.87	□□□□□ -0.19
SCUBE2-208	ENST00000524317	TCEANC2	Q96MN5	208 aa		13.87	□□□□□ -0.19
SCUBE2-208	ENST00000524317	UTP14A	Q9BVJ6	771 aa	Known RBP	13.87	□□□□□ -0.19
SCUBE2-208	ENST00000524317	SMC3	Q9UQE7	1217 aa		13.87	□□□□□ -0.19
SCUBE2-208	ENST00000524317	HCLS1	P14317	486 aa	Predicted RBP	13.86	□□□□□ -0.19
SCUBE2-208	ENST00000524317	ANKRD1	Q15327	319 aa		13.86	□□□□□ -0.19
SCUBE2-208	ENST00000524317	DSCC1	Q9BVC3	393 aa		13.86	□□□□□ -0.19
SCUBE2-208	ENST00000524317	PANK2	Q9BZ23	570 aa		13.86	□□□□□ -0.19
SCUBE2-208	ENST00000524317	MAST3	O60307	1309 aa		13.86	□□□□□ -0.19
SCUBE2-208	ENST00000524317	NWD2	Q9ULI1	1742 aa		13.86	□□□□□ -0.19
SCUBE2-208	ENST00000524317	FAM177B	A6PVY3	158 aa		13.86	□□□□□ -0.19
SCUBE2-208	ENST00000524317	PARP10	Q53GL7	1025 aa		13.86	□□□□□ -0.19
SCUBE2-208	ENST00000524317	NEK1	Q96PY6	1258 aa		13.86	□□□□□ -0.19
SCUBE2-208	ENST00000524317	GOPC	Q9HD26	462 aa		13.86	□□□□□ -0.19
SCUBE2-208	ENST00000524317	NAP1L2	Q9ULW6	460 aa	Predicted RBP	13.86	□□□□□ -0.19
SCUBE2-208	ENST00000524317	ABCC12	Q96J65	1359 aa		13.86	□□□□□ -0.19
SCUBE2-208	ENST00000524317	PDE8B	O95263	885 aa		13.85	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 22 ms