RNA–Protein interactions for RNA: ENST00000524006.5

SPIDR-222, Transcript of scaffold protein involved in DNA repair, human

TSL 5

Gene SPIDR, Length 970 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-222	ENST00000524006	HELLS	Q9NRZ9	838 aa		12.85	□□□□□ -0.35
SPIDR-222	ENST00000524006	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	12.85	□□□□□ -0.35
SPIDR-222	ENST00000524006	LY75	O60449	1722 aa		12.85	□□□□□ -0.35
SPIDR-222	ENST00000524006	SLC27A2	O14975	620 aa		12.84	□□□□□ -0.35
SPIDR-222	ENST00000524006	ZFY	P08048	801 aa	Predicted RBP	12.84	□□□□□ -0.35
SPIDR-222	ENST00000524006	ITGA6	P23229	1130 aa		12.84	□□□□□ -0.35
SPIDR-222	ENST00000524006	KCNQ4	P56696	695 aa		12.84	□□□□□ -0.35
SPIDR-222	ENST00000524006	CACNB1	Q02641	598 aa	Predicted RBP	12.84	□□□□□ -0.35
SPIDR-222	ENST00000524006	SLC27A3	Q5K4L6	730 aa		12.84	□□□□□ -0.35
SPIDR-222	ENST00000524006	LDHAL6A	Q6ZMR3	332 aa		12.84	□□□□□ -0.35
SPIDR-222	ENST00000524006	RUFY3	Q7L099	469 aa		12.84	□□□□□ -0.35
SPIDR-222	ENST00000524006	MAP4K1	Q92918	833 aa		12.84	□□□□□ -0.35
SPIDR-222	ENST00000524006	UTP14A	Q9BVJ6	771 aa	Known RBP	12.84	□□□□□ -0.35
SPIDR-222	ENST00000524006	SNRK	Q9NRH2	765 aa		12.84	□□□□□ -0.35
SPIDR-222	ENST00000524006	ISY1	Q9ULR0	285 aa	Known RBP	12.84	□□□□□ -0.35
SPIDR-222	ENST00000524006	DDX49	Q9Y6V7	483 aa	Known RBP	12.84	□□□□□ -0.35
SPIDR-222	ENST00000524006	COL24A1	Q17RW2	1714 aa		12.84	□□□□□ -0.35
SPIDR-222	ENST00000524006	RPAP1	Q9BWH6	1393 aa	Predicted RBP	12.83	□□□□□ -0.36
SPIDR-222	ENST00000524006	TIMM10	P62072	90 aa		12.83	□□□□□ -0.36
SPIDR-222	ENST00000524006	FKBP4	Q02790	459 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
SPIDR-222	ENST00000524006	ZSCAN25	Q6NSZ9	544 aa		12.83	□□□□□ -0.36
SPIDR-222	ENST00000524006	CLEC17A	Q6ZS10	378 aa		12.83	□□□□□ -0.36
SPIDR-222	ENST00000524006	RASEF	Q8IZ41	740 aa		12.83	□□□□□ -0.36
SPIDR-222	ENST00000524006	EDC3	Q96F86	508 aa	Known RBP	12.83	□□□□□ -0.36
SPIDR-222	ENST00000524006	ATP6V1D	Q9Y5K8	247 aa		12.83	□□□□□ -0.36
SPIDR-222	ENST00000524006	PNPLA7	Q6ZV29	1317 aa		12.83	□□□□□ -0.36
SPIDR-222	ENST00000524006	CCDC88A	Q3V6T2	1871 aa		12.82	□□□□□ -0.36
SPIDR-222	ENST00000524006	C4A	P0C0L4	1744 aa		12.82	□□□□□ -0.36
SPIDR-222	ENST00000524006	C4B	P0C0L5	1744 aa		12.82	□□□□□ -0.36
SPIDR-222	ENST00000524006	RNF113A	O15541	343 aa	Known RBP	12.82	□□□□□ -0.36
SPIDR-222	ENST00000524006	CSF1R	P07333	972 aa		12.82	□□□□□ -0.36
SPIDR-222	ENST00000524006	SLC5A1	P13866	664 aa		12.82	□□□□□ -0.36
SPIDR-222	ENST00000524006	NECTIN1	Q15223	517 aa		12.82	□□□□□ -0.36
SPIDR-222	ENST00000524006	TTF1	Q15361	905 aa	Predicted RBP	12.82	□□□□□ -0.36
SPIDR-222	ENST00000524006	WASHC4	Q2M389	1173 aa		12.82	□□□□□ -0.36
SPIDR-222	ENST00000524006	CCDC152	Q4G0S7	254 aa		12.82	□□□□□ -0.36
SPIDR-222	ENST00000524006	FOXD4L5	Q5VV16	416 aa	Predicted RBP	12.82	□□□□□ -0.36
SPIDR-222	ENST00000524006	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	12.82	□□□□□ -0.36
SPIDR-222	ENST00000524006	KCNB2	Q92953	911 aa		12.82	□□□□□ -0.36
SPIDR-222	ENST00000524006	XAGE2	Q96GT9	111 aa		12.82	□□□□□ -0.36
SPIDR-222	ENST00000524006	TTC14	Q96N46	770 aa		12.82	□□□□□ -0.36
SPIDR-222	ENST00000524006	SLC4A9	Q96Q91	983 aa		12.82	□□□□□ -0.36
SPIDR-222	ENST00000524006	MPHOSPH8	Q99549	860 aa		12.82	□□□□□ -0.36
SPIDR-222	ENST00000524006	PUS3	Q9BZE2	481 aa	Known RBP	12.82	□□□□□ -0.36
SPIDR-222	ENST00000524006	GREM2	Q9H772	168 aa		12.82	□□□□□ -0.36
SPIDR-222	ENST00000524006	ZSWIM6	Q9HCJ5	1215 aa		12.82	□□□□□ -0.36
SPIDR-222	ENST00000524006	MROH5	Q6ZUA9	1318 aa		12.82	□□□□□ -0.36
SPIDR-222	ENST00000524006	FAM177B	A6PVY3	158 aa		12.81	□□□□□ -0.36
SPIDR-222	ENST00000524006	MBD3	O95983	291 aa		12.81	□□□□□ -0.36
SPIDR-222	ENST00000524006	CYP2E1	P05181	493 aa	Predicted RBP	12.81	□□□□□ -0.36
SPIDR-222	ENST00000524006	HMGB1	P09429	215 aa	Known RBP	12.81	□□□□□ -0.36
SPIDR-222	ENST00000524006	UQCRFS1P1	P0C7P4	283 aa		12.81	□□□□□ -0.36
SPIDR-222	ENST00000524006	PDIA4	P13667	645 aa	Known RBP	12.81	□□□□□ -0.36
SPIDR-222	ENST00000524006	IGHMBP2	P38935	993 aa	Known RBP	12.81	□□□□□ -0.36
SPIDR-222	ENST00000524006	EIF5	P55010	431 aa	Known RBP	12.81	□□□□□ -0.36
SPIDR-222	ENST00000524006	CSPP1	Q1MSJ5	1256 aa		12.81	□□□□□ -0.36
SPIDR-222	ENST00000524006	ZNF34	Q8IZ26	560 aa		12.81	□□□□□ -0.36
SPIDR-222	ENST00000524006	TTLL11	Q8NHH1	800 aa		12.81	□□□□□ -0.36
SPIDR-222	ENST00000524006	SLC16A10	Q8TF71	515 aa		12.81	□□□□□ -0.36
SPIDR-222	ENST00000524006	SYAP1	Q96A49	352 aa	Predicted RBP	12.81	□□□□□ -0.36
SPIDR-222	ENST00000524006	NIP7	Q9Y221	180 aa	Known RBP eCLIP	12.81	□□□□□ -0.36
SPIDR-222	ENST00000524006	NDUFB9	Q9Y6M9	179 aa		12.81	□□□□□ -0.36
SPIDR-222	ENST00000524006	MAST2	Q6P0Q8	1798 aa		12.8	□□□□□ -0.36
SPIDR-222	ENST00000524006	TAF5L	O75529	589 aa		12.8	□□□□□ -0.36
SPIDR-222	ENST00000524006	RPS6KB1	P23443	525 aa		12.8	□□□□□ -0.36
SPIDR-222	ENST00000524006	PUM3	Q15397	648 aa	Known RBP	12.8	□□□□□ -0.36
SPIDR-222	ENST00000524006	ZNF589	Q86UQ0	364 aa	Predicted RBP	12.8	□□□□□ -0.36
SPIDR-222	ENST00000524006	CCDC83	Q8IWF9	413 aa		12.8	□□□□□ -0.36
SPIDR-222	ENST00000524006	CHMP4C	Q96CF2	233 aa		12.8	□□□□□ -0.36
SPIDR-222	ENST00000524006	DSCC1	Q9BVC3	393 aa		12.8	□□□□□ -0.36
SPIDR-222	ENST00000524006	TFCP2L1	Q9NZI6	479 aa		12.8	□□□□□ -0.36
SPIDR-222	ENST00000524006	CTNNA3	Q9UI47	895 aa		12.8	□□□□□ -0.36
SPIDR-222	ENST00000524006	UBN2	Q6ZU65	1347 aa		12.8	□□□□□ -0.36
SPIDR-222	ENST00000524006	CPA1	P15085	419 aa		12.79	□□□□□ -0.36
SPIDR-222	ENST00000524006	PDC	P20941	246 aa		12.79	□□□□□ -0.36
SPIDR-222	ENST00000524006	GTF2E1	P29083	439 aa	Predicted RBP	12.79	□□□□□ -0.36
SPIDR-222	ENST00000524006	ADORA1	P30542	326 aa		12.79	□□□□□ -0.36
SPIDR-222	ENST00000524006	KLHL40	Q2TBA0	621 aa		12.79	□□□□□ -0.36
SPIDR-222	ENST00000524006	ZMYM1	Q5SVZ6	1142 aa		12.79	□□□□□ -0.36
SPIDR-222	ENST00000524006	INTS5	Q6P9B9	1019 aa	Known RBP	12.79	□□□□□ -0.36
SPIDR-222	ENST00000524006	CCDC129	Q6ZRS4	1044 aa		12.79	□□□□□ -0.36
SPIDR-222	ENST00000524006	NEK1	Q96PY6	1258 aa		12.79	□□□□□ -0.36
SPIDR-222	ENST00000524006	CDC5L	Q99459	802 aa	Known RBP	12.79	□□□□□ -0.36
SPIDR-222	ENST00000524006	TAF1	P21675	1872 aa		12.78	□□□□□ -0.36
SPIDR-222	ENST00000524006	BRD1	O95696	1058 aa		12.78	□□□□□ -0.36
SPIDR-222	ENST00000524006	POLD1	P28340	1107 aa		12.78	□□□□□ -0.36
SPIDR-222	ENST00000524006	ITPK1	Q13572	414 aa		12.78	□□□□□ -0.36
SPIDR-222	ENST00000524006	PKP1	Q13835	747 aa		12.78	□□□□□ -0.36
SPIDR-222	ENST00000524006	GPR162	Q16538	588 aa		12.78	□□□□□ -0.36
SPIDR-222	ENST00000524006	ADCK5	Q3MIX3	580 aa		12.78	□□□□□ -0.36
SPIDR-222	ENST00000524006	NLGN2	Q8NFZ4	835 aa		12.78	□□□□□ -0.36
SPIDR-222	ENST00000524006	ANP32B	Q92688	251 aa	Known RBP	12.78	□□□□□ -0.36
SPIDR-222	ENST00000524006	KIF3A	Q9Y496	699 aa		12.78	□□□□□ -0.36
SPIDR-222	ENST00000524006	QSER1	Q2KHR3	1735 aa		12.78	□□□□□ -0.36
SPIDR-222	ENST00000524006	MAST3	O60307	1309 aa		12.78	□□□□□ -0.36
SPIDR-222	ENST00000524006	CNTNAP4	Q9C0A0	1308 aa		12.78	□□□□□ -0.36
SPIDR-222	ENST00000524006	VPS37C	A5D8V6	355 aa	Predicted RBP	12.77	□□□□□ -0.37
SPIDR-222	ENST00000524006	NPHP1	O15259	732 aa		12.77	□□□□□ -0.37
SPIDR-222	ENST00000524006	CAMTA2	O94983	1202 aa		12.77	□□□□□ -0.37
SPIDR-222	ENST00000524006	GJB2	P29033	226 aa		12.77	□□□□□ -0.37

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