RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 C15orf52Q6ZUT6 534 aaKnown RBP20.4■□□□□ 0.86
LSM1-205ENST00000523511 HELBQ8NG08 1087 aaPredicted RBP20.4■□□□□ 0.86
LSM1-205ENST00000523511 DCPSQ96C86 337 aaKnown RBP20.4■□□□□ 0.86
LSM1-205ENST00000523511 KAZALD1Q96I82 304 aa20.4■□□□□ 0.86
LSM1-205ENST00000523511 GNAI3P08754 354 aa20.39■□□□□ 0.85
LSM1-205ENST00000523511 UBE4AQ14139 1066 aa20.39■□□□□ 0.85
LSM1-205ENST00000523511 FRAT1Q92837 279 aaPredicted RBP20.39■□□□□ 0.85
LSM1-205ENST00000523511 COL4A1P02462 1669 aa20.38■□□□□ 0.85
LSM1-205ENST00000523511 ZBED9Q6R2W3 1325 aa20.38■□□□□ 0.85
LSM1-205ENST00000523511 TBC1D10BQ4KMP7 808 aaPredicted RBP20.38■□□□□ 0.85
LSM1-205ENST00000523511 SAMD7Q7Z3H4 446 aa20.38■□□□□ 0.85
LSM1-205ENST00000523511 CD209Q9NNX6 404 aa20.38■□□□□ 0.85
LSM1-205ENST00000523511 HDAC9Q9UKV0 1011 aa20.38■□□□□ 0.85
LSM1-205ENST00000523511 WTIPA6NIX2 430 aaPredicted RBP20.37■□□□□ 0.85
LSM1-205ENST00000523511 HIRAP54198 1017 aaPredicted RBP20.37■□□□□ 0.85
LSM1-205ENST00000523511 KIF4BQ2VIQ3 1234 aa20.37■□□□□ 0.85
LSM1-205ENST00000523511 ATF7IPQ6VMQ6 1270 aa20.37■□□□□ 0.85
LSM1-205ENST00000523511 JMYQ8N9B5 988 aa20.37■□□□□ 0.85
LSM1-205ENST00000523511 ABT1Q9ULW3 272 aaKnown RBP20.37■□□□□ 0.85
LSM1-205ENST00000523511 MYH3P11055 1940 aa20.36■□□□□ 0.85
LSM1-205ENST00000523511 ZNF280AP59817 542 aaPredicted RBP20.36■□□□□ 0.85
LSM1-205ENST00000523511 DEFB115Q30KQ5 88 aa20.36■□□□□ 0.85
LSM1-205ENST00000523511 METTL24Q5JXM2 366 aa20.36■□□□□ 0.85
LSM1-205ENST00000523511 INTS3Q68E01 1043 aaKnown RBP20.36■□□□□ 0.85
LSM1-205ENST00000523511 TXNRD3Q86VQ6 643 aa20.36■□□□□ 0.85
LSM1-205ENST00000523511 VPS37DQ86XT2 251 aa20.36■□□□□ 0.85
LSM1-205ENST00000523511 ANKRD44Q8N8A2 993 aa20.36■□□□□ 0.85
LSM1-205ENST00000523511 TRPM4Q8TD43 1214 aa20.36■□□□□ 0.85
LSM1-205ENST00000523511 RIPOR2Q9Y4F9 1068 aa20.36■□□□□ 0.85
LSM1-205ENST00000523511 GTF2IP78347 998 aa20.35■□□□□ 0.85
LSM1-205ENST00000523511 CAVIN4Q5BKX8 364 aa20.35■□□□□ 0.85
LSM1-205ENST00000523511 DACT2Q5SW24 774 aa20.35■□□□□ 0.85
LSM1-205ENST00000523511 ZKSCAN2Q63HK3 967 aa20.35■□□□□ 0.85
LSM1-205ENST00000523511 SULF1Q8IWU6 871 aa20.35■□□□□ 0.85
LSM1-205ENST00000523511 MYOZ2Q9NPC6 264 aa20.35■□□□□ 0.85
LSM1-205ENST00000523511 MKRN1Q9UHC7 482 aaKnown RBP20.35■□□□□ 0.85
LSM1-205ENST00000523511 FBXO3Q9UK99 471 aa20.35■□□□□ 0.85
LSM1-205ENST00000523511 LTBP1Q14766 1721 aa20.35■□□□□ 0.85
LSM1-205ENST00000523511 GMLQ99445 158 aa20.34■□□□□ 0.85
LSM1-205ENST00000523511 ZNF609O15014 1411 aa20.34■□□□□ 0.85
LSM1-205ENST00000523511 BCAR3O75815 825 aa20.33■□□□□ 0.85
LSM1-205ENST00000523511 IL1R1P14778 569 aa20.33■□□□□ 0.85
LSM1-205ENST00000523511 HIBADHP31937 336 aaKnown RBP20.33■□□□□ 0.85
LSM1-205ENST00000523511 KRT26Q7Z3Y9 468 aa20.33■□□□□ 0.85
LSM1-205ENST00000523511 USP48Q86UV5 1035 aa20.33■□□□□ 0.85
LSM1-205ENST00000523511 GLIS2Q9BZE0 524 aaPredicted RBP20.33■□□□□ 0.85
LSM1-205ENST00000523511 PUS3Q9BZE2 481 aaKnown RBP20.33■□□□□ 0.85
LSM1-205ENST00000523511 SHTN1A0MZ66 631 aa20.32■□□□□ 0.84
LSM1-205ENST00000523511 SASH1O94885 1247 aa20.32■□□□□ 0.84
LSM1-205ENST00000523511 PDE8BO95263 885 aa20.32■□□□□ 0.84
LSM1-205ENST00000523511 CELF2O95319 508 aaKnown RBP20.32■□□□□ 0.84
LSM1-205ENST00000523511 ECE1P42892 770 aa20.32■□□□□ 0.84
LSM1-205ENST00000523511 SCARF1Q14162 830 aa20.32■□□□□ 0.84
LSM1-205ENST00000523511 SNAP23O00161 211 aa20.31■□□□□ 0.84
LSM1-205ENST00000523511 EYA2O00167 538 aa20.31■□□□□ 0.84
LSM1-205ENST00000523511 TRAF5O00463 557 aa20.31■□□□□ 0.84
LSM1-205ENST00000523511 FRAT2O75474 233 aaPredicted RBP20.31■□□□□ 0.84
LSM1-205ENST00000523511 IFIT1P09914 478 aaKnown RBP20.31■□□□□ 0.84
LSM1-205ENST00000523511 TRIM27P14373 513 aa20.31■□□□□ 0.84
LSM1-205ENST00000523511 KLRK1P26718 216 aa20.31■□□□□ 0.84
LSM1-205ENST00000523511 FKBP1AP62942 108 aaKnown RBP20.31■□□□□ 0.84
LSM1-205ENST00000523511 ZNF408Q9H9D4 720 aa20.31■□□□□ 0.84
LSM1-205ENST00000523511 CNTNAP1P78357 1384 aa20.31■□□□□ 0.84
LSM1-205ENST00000523511 ADAMTSL1Q8N6G6 1762 aa20.31■□□□□ 0.84
LSM1-205ENST00000523511 RASSF10A6NK89 507 aa20.3■□□□□ 0.84
LSM1-205ENST00000523511 LRRC24Q50LG9 513 aa20.3■□□□□ 0.84
LSM1-205ENST00000523511 FTSJ3Q8IY81 847 aaKnown RBP20.3■□□□□ 0.84
LSM1-205ENST00000523511 LRRFIP2Q9Y608 721 aaKnown RBP20.3■□□□□ 0.84
LSM1-205ENST00000523511 CEP350Q5VT06 3117 aa20.3■□□□□ 0.84
LSM1-205ENST00000523511 PUM3Q15397 648 aaKnown RBP20.29■□□□□ 0.84
LSM1-205ENST00000523511 CST9Q5W186 159 aa20.29■□□□□ 0.84
LSM1-205ENST00000523511 PAXIP1Q6ZW49 1069 aaPredicted RBP20.29■□□□□ 0.84
LSM1-205ENST00000523511 KIAA0825Q8IV33 1275 aa20.29■□□□□ 0.84
LSM1-205ENST00000523511 C2orf69Q8N8R5 385 aa20.29■□□□□ 0.84
LSM1-205ENST00000523511 GGA3Q9NZ52 723 aa20.29■□□□□ 0.84
LSM1-205ENST00000523511 CEP126Q9P2H0 1117 aa20.29■□□□□ 0.84
LSM1-205ENST00000523511 PITPNM2Q9BZ72 1349 aa20.28■□□□□ 0.84
LSM1-205ENST00000523511 CIAO1O76071 339 aa20.28■□□□□ 0.84
LSM1-205ENST00000523511 EGFRP00533 1210 aa20.28■□□□□ 0.84
LSM1-205ENST00000523511 GNAI2P04899 355 aa20.28■□□□□ 0.84
LSM1-205ENST00000523511 MS4A1P11836 297 aa20.28■□□□□ 0.84
LSM1-205ENST00000523511 ANGEL2Q5VTE6 544 aaKnown RBP20.28■□□□□ 0.84
LSM1-205ENST00000523511 KLHDC4Q8TBB5 520 aa20.28■□□□□ 0.84
LSM1-205ENST00000523511 CLUAP1Q96AJ1 413 aa20.28■□□□□ 0.84
LSM1-205ENST00000523511 MEIS3Q99687 375 aa20.28■□□□□ 0.84
LSM1-205ENST00000523511 TLL2Q9Y6L7 1015 aa20.28■□□□□ 0.84
LSM1-205ENST00000523511 MYO1BO43795 1136 aa20.27■□□□□ 0.84
LSM1-205ENST00000523511 SLC5A1P13866 664 aa20.27■□□□□ 0.84
LSM1-205ENST00000523511 IL15P40933 162 aaPredicted RBP20.27■□□□□ 0.84
LSM1-205ENST00000523511 GYG1P46976 350 aa20.27■□□□□ 0.84
LSM1-205ENST00000523511 PTPN12Q05209 780 aaKnown RBP20.27■□□□□ 0.84
LSM1-205ENST00000523511 DLGAP5Q15398 846 aa20.27■□□□□ 0.84
LSM1-205ENST00000523511 TDRD7Q8NHU6 1098 aaKnown RBP20.27■□□□□ 0.84
LSM1-205ENST00000523511 LPIN2Q92539 896 aa20.27■□□□□ 0.84
LSM1-205ENST00000523511 HHIPL1Q96JK4 782 aa20.27■□□□□ 0.84
LSM1-205ENST00000523511 FAM84BQ96KN1 310 aaPredicted RBP20.27■□□□□ 0.84
LSM1-205ENST00000523511 MXD3Q9BW11 206 aa20.27■□□□□ 0.84
LSM1-205ENST00000523511 IRS2Q9Y4H2 1338 aa20.27■□□□□ 0.83
LSM1-205ENST00000523511 RFX5P48382 616 aaPredicted RBP20.26■□□□□ 0.83
LSM1-205ENST00000523511 VEGFBP49765 207 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms