RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 A0A1W2PQ64 194 aa9.76□□□□□ -0.85
CSMD1-213ENST00000523488 A0A1W2PQD8 194 aa9.76□□□□□ -0.85
CSMD1-213ENST00000523488 VWA3AA6NCI4 1184 aa9.76□□□□□ -0.85
CSMD1-213ENST00000523488 NBPF6Q5VWK0 638 aa9.76□□□□□ -0.85
CSMD1-213ENST00000523488 NBPF4Q96M43 638 aa9.76□□□□□ -0.85
CSMD1-213ENST00000523488 L1RE1Q9UN81 338 aa9.76□□□□□ -0.85
CSMD1-213ENST00000523488 PPP6R1Q9UPN7 881 aa9.76□□□□□ -0.85
CSMD1-213ENST00000523488 CCDC196A0A1B0GTZ2 297 aa9.75□□□□□ -0.85
CSMD1-213ENST00000523488 SRRM3A6NNA2 597 aaPredicted RBP9.75□□□□□ -0.85
CSMD1-213ENST00000523488 MYCNP04198 464 aaPredicted RBP9.75□□□□□ -0.85
CSMD1-213ENST00000523488 GYS2P54840 703 aa9.75□□□□□ -0.85
CSMD1-213ENST00000523488 EVCP57679 992 aa9.75□□□□□ -0.85
CSMD1-213ENST00000523488 GNL2Q13823 731 aaKnown RBP9.75□□□□□ -0.85
CSMD1-213ENST00000523488 SMC1AQ14683 1233 aaKnown RBP9.75□□□□□ -0.85
CSMD1-213ENST00000523488 KRT24Q2M2I5 525 aa9.75□□□□□ -0.85
CSMD1-213ENST00000523488 MCTP2Q6DN12 878 aa9.75□□□□□ -0.85
CSMD1-213ENST00000523488 WDR93Q6P2C0 686 aa9.75□□□□□ -0.85
CSMD1-213ENST00000523488 MMS22LQ6ZRQ5 1243 aa9.75□□□□□ -0.85
CSMD1-213ENST00000523488 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.75□□□□□ -0.85
CSMD1-213ENST00000523488 PPM1EQ8WY54 764 aa9.75□□□□□ -0.85
CSMD1-213ENST00000523488 MAP4K1Q92918 833 aa9.75□□□□□ -0.85
CSMD1-213ENST00000523488 UTYO14607 1347 aa9.75□□□□□ -0.85
CSMD1-213ENST00000523488 OAS2P29728 719 aaKnown RBP9.75□□□□□ -0.85
CSMD1-213ENST00000523488 ME3Q16798 604 aa9.75□□□□□ -0.85
CSMD1-213ENST00000523488 MAGEC3Q8TD91 643 aa9.75□□□□□ -0.85
CSMD1-213ENST00000523488 TERF2IPQ9NYB0 399 aa9.75□□□□□ -0.85
CSMD1-213ENST00000523488 RAI14Q9P0K7 980 aa9.75□□□□□ -0.85
CSMD1-213ENST00000523488 GGA2Q9UJY4 613 aa9.75□□□□□ -0.85
CSMD1-213ENST00000523488 ARFGEF2Q9Y6D5 1785 aa9.75□□□□□ -0.85
CSMD1-213ENST00000523488 ARHGAP23Q9P227 1491 aa9.75□□□□□ -0.85
CSMD1-213ENST00000523488 NUTM2FA1L443 756 aa9.74□□□□□ -0.85
CSMD1-213ENST00000523488 ZEB2O60315 1214 aa9.74□□□□□ -0.85
CSMD1-213ENST00000523488 NR1I2O75469 434 aa9.74□□□□□ -0.85
CSMD1-213ENST00000523488 PDCP20941 246 aa9.74□□□□□ -0.85
CSMD1-213ENST00000523488 ZNF165P49910 485 aa9.74□□□□□ -0.85
CSMD1-213ENST00000523488 TBC1D22AQ8WUA7 517 aa9.74□□□□□ -0.85
CSMD1-213ENST00000523488 LLPHQ9BRT6 129 aaKnown RBP9.74□□□□□ -0.85
CSMD1-213ENST00000523488 TRAK1Q9UPV9 953 aa9.74□□□□□ -0.85
CSMD1-213ENST00000523488 TOB2Q14106 344 aaPredicted RBP9.74□□□□□ -0.85
CSMD1-213ENST00000523488 NBPF20Q3BBV1 942 aa9.74□□□□□ -0.85
CSMD1-213ENST00000523488 NAA16Q6N069 864 aaPredicted RBP9.74□□□□□ -0.85
CSMD1-213ENST00000523488 HEG1Q9ULI3 1381 aa9.74□□□□□ -0.85
CSMD1-213ENST00000523488 PATL2C9JE40 543 aaKnown RBP9.74□□□□□ -0.85
CSMD1-213ENST00000523488 WLSQ5T9L3 541 aa9.74□□□□□ -0.85
CSMD1-213ENST00000523488 LRRC31Q6UY01 552 aa9.74□□□□□ -0.85
CSMD1-213ENST00000523488 FMR1NBQ8N0W7 255 aaPredicted RBP9.74□□□□□ -0.85
CSMD1-213ENST00000523488 RUBCNQ92622 972 aa9.74□□□□□ -0.85
CSMD1-213ENST00000523488 ANKZF1Q9H8Y5 726 aa9.74□□□□□ -0.85
CSMD1-213ENST00000523488 DOCK2Q92608 1830 aa9.74□□□□□ -0.85
CSMD1-213ENST00000523488 KIF1AQ12756 1690 aa9.74□□□□□ -0.85
CSMD1-213ENST00000523488 TUBBP07437 444 aa9.73□□□□□ -0.85
CSMD1-213ENST00000523488 FNTAP49354 379 aa9.73□□□□□ -0.85
CSMD1-213ENST00000523488 ARID5BQ14865 1188 aa9.73□□□□□ -0.85
CSMD1-213ENST00000523488 DACT1Q9NYF0 836 aa9.73□□□□□ -0.85
CSMD1-213ENST00000523488 KIF13BQ9NQT8 1826 aa9.73□□□□□ -0.85
CSMD1-213ENST00000523488 ZNF662Q6ZS27 426 aa9.73□□□□□ -0.85
CSMD1-213ENST00000523488 CDC37L1Q7L3B6 337 aa9.73□□□□□ -0.85
CSMD1-213ENST00000523488 NUTM1Q86Y26 1132 aa9.73□□□□□ -0.85
CSMD1-213ENST00000523488 PRPF38AQ8NAV1 312 aaKnown RBP9.73□□□□□ -0.85
CSMD1-213ENST00000523488 TUBE1Q9UJT0 475 aa9.73□□□□□ -0.85
CSMD1-213ENST00000523488 EIF3CLB5ME19 914 aaKnown RBP9.73□□□□□ -0.85
CSMD1-213ENST00000523488 TRHP20396 242 aaPredicted RBP9.73□□□□□ -0.85
CSMD1-213ENST00000523488 CASTP20810 708 aaKnown RBP9.73□□□□□ -0.85
CSMD1-213ENST00000523488 APOBRQ0VD83 1088 aa9.73□□□□□ -0.85
CSMD1-213ENST00000523488 ZNF572Q7Z3I7 529 aaPredicted RBP9.73□□□□□ -0.85
CSMD1-213ENST00000523488 C14orf37Q86TY3 774 aa9.73□□□□□ -0.85
CSMD1-213ENST00000523488 BICD2Q8TD16 824 aa9.73□□□□□ -0.85
CSMD1-213ENST00000523488 EIF3CQ99613 913 aaKnown RBP9.73□□□□□ -0.85
CSMD1-213ENST00000523488 PAPPAQ13219 1627 aa9.73□□□□□ -0.85
CSMD1-213ENST00000523488 GOLGA6L9A6NEM1 432 aa9.72□□□□□ -0.85
CSMD1-213ENST00000523488 KIF3CO14782 793 aa9.72□□□□□ -0.85
CSMD1-213ENST00000523488 KCNV1Q6PIU1 500 aa9.72□□□□□ -0.85
CSMD1-213ENST00000523488 YTHDF3Q7Z739 585 aaKnown RBP9.72□□□□□ -0.85
CSMD1-213ENST00000523488 LARP6Q9BRS8 491 aaKnown RBP9.72□□□□□ -0.85
CSMD1-213ENST00000523488 TPCN1Q9ULQ1 816 aa9.72□□□□□ -0.85
CSMD1-213ENST00000523488 SCN11AQ9UI33 1791 aa9.72□□□□□ -0.85
CSMD1-213ENST00000523488 CHD4Q14839 1912 aa9.72□□□□□ -0.85
CSMD1-213ENST00000523488 GNAI2P04899 355 aa9.72□□□□□ -0.85
CSMD1-213ENST00000523488 TXLNAP40222 546 aa9.72□□□□□ -0.85
CSMD1-213ENST00000523488 AMPHP49418 695 aa9.72□□□□□ -0.85
CSMD1-213ENST00000523488 BSDC1Q9NW68 430 aaPredicted RBP9.72□□□□□ -0.85
CSMD1-213ENST00000523488 PLCH1Q4KWH8 1693 aa9.72□□□□□ -0.85
CSMD1-213ENST00000523488 SATB1Q01826 763 aa9.72□□□□□ -0.85
CSMD1-213ENST00000523488 ILDR1Q86SU0 546 aaPredicted RBP9.72□□□□□ -0.85
CSMD1-213ENST00000523488 GOLPH3LQ9H4A5 285 aa9.72□□□□□ -0.85
CSMD1-213ENST00000523488 A0A087WUV0 522 aaPredicted RBP9.71□□□□□ -0.85
CSMD1-213ENST00000523488 C1orf131Q8NDD1 294 aaKnown RBP9.71□□□□□ -0.85
CSMD1-213ENST00000523488 FAM71BQ8TC56 605 aa9.71□□□□□ -0.85
CSMD1-213ENST00000523488 AFDNP55196 1824 aaKnown RBP9.71□□□□□ -0.85
CSMD1-213ENST00000523488 POTEB2H3BUK9 544 aa9.71□□□□□ -0.85
CSMD1-213ENST00000523488 CCDC91Q7Z6B0 441 aa9.71□□□□□ -0.85
CSMD1-213ENST00000523488 MICALL1Q8N3F8 863 aa9.71□□□□□ -0.85
CSMD1-213ENST00000523488 CCDC34Q96HJ3 373 aa9.71□□□□□ -0.85
CSMD1-213ENST00000523488 DNAJC25Q9H1X3 360 aa9.71□□□□□ -0.85
CSMD1-213ENST00000523488 ZCCHC17Q9NP64 241 aaKnown RBP9.71□□□□□ -0.85
CSMD1-213ENST00000523488 PPFIA4O75335 1185 aa9.71□□□□□ -0.86
CSMD1-213ENST00000523488 MRPL12P52815 198 aaKnown RBP9.71□□□□□ -0.86
CSMD1-213ENST00000523488 ANKRD1Q15327 319 aa9.71□□□□□ -0.86
CSMD1-213ENST00000523488 ZRSR1Q15695 479 aaKnown RBP9.71□□□□□ -0.86
CSMD1-213ENST00000523488 AKAP2Q9Y2D5 859 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms