RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 GPIHBP1Q8IV16 184 aa11.64□□□□□ -0.55
PDGFRB-207ENST00000520579 MED4Q9NPJ6 270 aa11.64□□□□□ -0.55
PDGFRB-207ENST00000520579 ARHGEF5Q12774 1597 aa11.64□□□□□ -0.55
PDGFRB-207ENST00000520579 MTX1Q13505 466 aa11.63□□□□□ -0.55
PDGFRB-207ENST00000520579 GPATCH3Q96I76 525 aa11.63□□□□□ -0.55
PDGFRB-207ENST00000520579 ZSWIM6Q9HCJ5 1215 aa11.63□□□□□ -0.55
PDGFRB-207ENST00000520579 CFAP45Q9UL16 551 aa11.63□□□□□ -0.55
PDGFRB-207ENST00000520579 TOP1P11387 765 aaKnown RBP11.63□□□□□ -0.55
PDGFRB-207ENST00000520579 HAND2P61296 217 aa11.63□□□□□ -0.55
PDGFRB-207ENST00000520579 RNF20Q5VTR2 975 aa11.63□□□□□ -0.55
PDGFRB-207ENST00000520579 NUCKS1Q9H1E3 243 aaKnown RBP11.63□□□□□ -0.55
PDGFRB-207ENST00000520579 ECHDC1Q9NTX5 307 aa11.63□□□□□ -0.55
PDGFRB-207ENST00000520579 NEMFO60524 1076 aa11.63□□□□□ -0.55
PDGFRB-207ENST00000520579 NDUFA8P51970 172 aa11.63□□□□□ -0.55
PDGFRB-207ENST00000520579 HSP90B2PQ58FF3 399 aa11.63□□□□□ -0.55
PDGFRB-207ENST00000520579 MRFAP1L1Q96HT8 127 aa11.63□□□□□ -0.55
PDGFRB-207ENST00000520579 GPHNQ9NQX3 736 aaPredicted RBP11.63□□□□□ -0.55
PDGFRB-207ENST00000520579 IQGAP3Q86VI3 1631 aa11.63□□□□□ -0.55
PDGFRB-207ENST00000520579 ZMYND10O75800 440 aa11.62□□□□□ -0.55
PDGFRB-207ENST00000520579 ECM2O94769 699 aaPredicted RBP11.62□□□□□ -0.55
PDGFRB-207ENST00000520579 TBC1D8O95759 1140 aa11.62□□□□□ -0.55
PDGFRB-207ENST00000520579 SLC3A2P08195 630 aaKnown RBP11.62□□□□□ -0.55
PDGFRB-207ENST00000520579 PIP4K2AP48426 406 aaPredicted RBP11.62□□□□□ -0.55
PDGFRB-207ENST00000520579 FANCCQ00597 558 aa11.62□□□□□ -0.55
PDGFRB-207ENST00000520579 AKAP17AQ02040 695 aaKnown RBP11.62□□□□□ -0.55
PDGFRB-207ENST00000520579 KLHL10Q6JEL2 608 aa11.62□□□□□ -0.55
PDGFRB-207ENST00000520579 DDX46Q7L014 1031 aaKnown RBP11.62□□□□□ -0.55
PDGFRB-207ENST00000520579 TRMT44Q8IYL2 757 aaKnown RBP11.62□□□□□ -0.55
PDGFRB-207ENST00000520579 DHX58Q96C10 678 aa11.62□□□□□ -0.55
PDGFRB-207ENST00000520579 LIG3P49916 1009 aa11.62□□□□□ -0.55
PDGFRB-207ENST00000520579 GSDMDP57764 484 aa11.62□□□□□ -0.55
PDGFRB-207ENST00000520579 NAIF1Q69YI7 327 aaPredicted RBP11.62□□□□□ -0.55
PDGFRB-207ENST00000520579 CC2D1AQ6P1N0 951 aaPredicted RBP11.62□□□□□ -0.55
PDGFRB-207ENST00000520579 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.62□□□□□ -0.55
PDGFRB-207ENST00000520579 G3BP1Q13283 466 aaKnown RBP eCLIP11.62□□□□□ -0.55
PDGFRB-207ENST00000520579 ZNF827Q17R98 1081 aa11.62□□□□□ -0.55
PDGFRB-207ENST00000520579 MFSD4BQ5TF39 518 aa11.62□□□□□ -0.55
PDGFRB-207ENST00000520579 NBPF10Q6P3W6 841 aaKnown RBP11.62□□□□□ -0.55
PDGFRB-207ENST00000520579 KNDC1Q76NI1 1749 aa11.62□□□□□ -0.55
PDGFRB-207ENST00000520579 RXRAP19793 462 aa11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 MRPS25P82663 173 aaKnown RBP11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 PACS2Q86VP3 889 aa11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 CHPF2Q9P2E5 772 aa11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 A0A0G2JLW4 131 aa11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 A0A0U1RQJ8 604 aa11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 PES1O00541 588 aaKnown RBP11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 SCP2P22307 547 aa11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 LONRF2Q1L5Z9 754 aa11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 KIF4BQ2VIQ3 1234 aa11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 JAKMIP3Q5VZ66 844 aa11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 SRLQ86TD4 932 aa11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 ATRIPQ8WXE1 791 aa11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 STAP2Q9UGK3 403 aa11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 PTPDC1A2A3K4 754 aa11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 RPS6KB1P23443 525 aa11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 TOB2Q14106 344 aaPredicted RBP11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 MTF1Q14872 753 aa11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 NUDT16Q96DE0 195 aaKnown RBP11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 BICC1Q9H694 974 aaKnown RBP11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 SALL3Q9BXA9 1300 aa11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 KCNQ3O43525 872 aa11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 CENPHQ9H3R5 247 aa11.61□□□□□ -0.55
PDGFRB-207ENST00000520579 FANCAO15360 1455 aa11.6□□□□□ -0.55
PDGFRB-207ENST00000520579 UNC13BO14795 1591 aa11.6□□□□□ -0.55
PDGFRB-207ENST00000520579 NEUROD6Q96NK8 337 aa11.6□□□□□ -0.55
PDGFRB-207ENST00000520579 NEK1Q96PY6 1258 aa11.6□□□□□ -0.55
PDGFRB-207ENST00000520579 TRPM2O94759 1503 aa11.6□□□□□ -0.55
PDGFRB-207ENST00000520579 PLCH2O75038 1416 aa11.6□□□□□ -0.55
PDGFRB-207ENST00000520579 KIF2AO00139 706 aaPredicted RBP11.6□□□□□ -0.55
PDGFRB-207ENST00000520579 TADA3O75528 432 aa11.6□□□□□ -0.55
PDGFRB-207ENST00000520579 SF3A3Q12874 501 aaKnown RBP eCLIP11.6□□□□□ -0.55
PDGFRB-207ENST00000520579 RESTQ13127 1097 aa11.6□□□□□ -0.55
PDGFRB-207ENST00000520579 RIN2Q8WYP3 895 aaPredicted RBP11.6□□□□□ -0.55
PDGFRB-207ENST00000520579 IPO7O95373 1038 aaKnown RBP11.6□□□□□ -0.55
PDGFRB-207ENST00000520579 TPM1P09493 284 aa11.6□□□□□ -0.55
PDGFRB-207ENST00000520579 PSMD2Q13200 908 aa11.6□□□□□ -0.55
PDGFRB-207ENST00000520579 ARMC3Q5W041 872 aa11.6□□□□□ -0.55
PDGFRB-207ENST00000520579 MCTP2Q6DN12 878 aa11.6□□□□□ -0.55
PDGFRB-207ENST00000520579 CLIC4Q9Y696 253 aa11.6□□□□□ -0.55
PDGFRB-207ENST00000520579 SBNO2Q9Y2G9 1366 aa11.59□□□□□ -0.55
PDGFRB-207ENST00000520579 FANCGO15287 622 aa11.59□□□□□ -0.55
PDGFRB-207ENST00000520579 WDHD1O75717 1129 aaPredicted RBP11.59□□□□□ -0.55
PDGFRB-207ENST00000520579 SCRN1Q12765 414 aa11.59□□□□□ -0.55
PDGFRB-207ENST00000520579 TOGARAM2Q6ZUX3 1019 aa11.59□□□□□ -0.55
PDGFRB-207ENST00000520579 PCDHA7Q9UN72 937 aa11.59□□□□□ -0.55
PDGFRB-207ENST00000520579 ADGRL1O94910 1474 aa11.59□□□□□ -0.55
PDGFRB-207ENST00000520579 EIF3CLB5ME19 914 aaKnown RBP11.59□□□□□ -0.55
PDGFRB-207ENST00000520579 STX17P56962 302 aa11.59□□□□□ -0.55
PDGFRB-207ENST00000520579 SYNE3Q6ZMZ3 975 aa11.59□□□□□ -0.55
PDGFRB-207ENST00000520579 CCDC82Q8N4S0 544 aa11.59□□□□□ -0.55
PDGFRB-207ENST00000520579 CCDC150Q8NCX0 1101 aa11.59□□□□□ -0.55
PDGFRB-207ENST00000520579 MRPS27Q92552 414 aaKnown RBP11.59□□□□□ -0.55
PDGFRB-207ENST00000520579 EIF3CQ99613 913 aaKnown RBP11.59□□□□□ -0.55
PDGFRB-207ENST00000520579 TTC21AQ8NDW8 1320 aa11.59□□□□□ -0.55
PDGFRB-207ENST00000520579 YTHDC2Q9H6S0 1430 aaKnown RBP11.59□□□□□ -0.55
PDGFRB-207ENST00000520579 TULP4Q9NRJ4 1543 aa11.59□□□□□ -0.55
PDGFRB-207ENST00000520579 FAM160A1Q05DH4 1040 aa11.59□□□□□ -0.55
PDGFRB-207ENST00000520579 NECTIN1Q15223 517 aa11.59□□□□□ -0.55
PDGFRB-207ENST00000520579 ZKSCAN8Q15776 578 aaPredicted RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms