RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 IRS2Q9Y4H2 1338 aa37.44■■■■□ 3.58
SYNPO-203ENST00000518872 TRAF5O00463 557 aa37.44■■■■□ 3.58
SYNPO-203ENST00000518872 EGFRP00533 1210 aa37.43■■■■□ 3.58
SYNPO-203ENST00000518872 FMR1Q06787 632 aaKnown RBP eCLIP37.43■■■■□ 3.58
SYNPO-203ENST00000518872 TBC1D10BQ4KMP7 808 aaPredicted RBP37.43■■■■□ 3.58
SYNPO-203ENST00000518872 LDHAL6AQ6ZMR3 332 aa37.42■■■■□ 3.58
SYNPO-203ENST00000518872 GLIS2Q9BZE0 524 aaPredicted RBP37.42■■■■□ 3.58
SYNPO-203ENST00000518872 KCNJ4P48050 445 aa37.41■■■■□ 3.58
SYNPO-203ENST00000518872 KIF4BQ2VIQ3 1234 aa37.41■■■■□ 3.58
SYNPO-203ENST00000518872 TAF7LQ5H9L4 462 aa37.41■■■■□ 3.58
SYNPO-203ENST00000518872 STRIP1Q5VSL9 837 aa37.41■■■■□ 3.58
SYNPO-203ENST00000518872 CST9Q5W186 159 aa37.41■■■■□ 3.58
SYNPO-203ENST00000518872 USP44Q9H0E7 712 aa37.41■■■■□ 3.58
SYNPO-203ENST00000518872 MYO3BQ8WXR4 1341 aa37.4■■■■□ 3.58
SYNPO-203ENST00000518872 KLRK1P26718 216 aa37.4■■■■□ 3.58
SYNPO-203ENST00000518872 DACT2Q5SW24 774 aa37.4■■■■□ 3.58
SYNPO-203ENST00000518872 ZNF594Q96JF6 807 aaPredicted RBP37.4■■■■□ 3.58
SYNPO-203ENST00000518872 BICC1Q9H694 974 aaKnown RBP37.4■■■■□ 3.58
SYNPO-203ENST00000518872 TAF5LO75529 589 aa37.38■■■■□ 3.57
SYNPO-203ENST00000518872 USP17L8P0C7I0 530 aa37.38■■■■□ 3.57
SYNPO-203ENST00000518872 DEFB115Q30KQ5 88 aa37.38■■■■□ 3.57
SYNPO-203ENST00000518872 CNNM1Q9NRU3 951 aa37.38■■■■□ 3.57
SYNPO-203ENST00000518872 VEGFBP49765 207 aa37.37■■■■□ 3.57
SYNPO-203ENST00000518872 MMP14P50281 582 aa37.37■■■■□ 3.57
SYNPO-203ENST00000518872 RARSP54136 660 aaKnown RBP37.37■■■■□ 3.57
SYNPO-203ENST00000518872 ANKRD44Q8N8A2 993 aa37.37■■■■□ 3.57
SYNPO-203ENST00000518872 ABT1Q9ULW3 272 aaKnown RBP37.37■■■■□ 3.57
SYNPO-203ENST00000518872 HELBQ8NG08 1087 aaPredicted RBP37.36■■■■□ 3.57
SYNPO-203ENST00000518872 API5Q9BZZ5 524 aaKnown RBP37.36■■■■□ 3.57
SYNPO-203ENST00000518872 CD209Q9NNX6 404 aa37.35■■■■□ 3.57
SYNPO-203ENST00000518872 NOB1Q9ULX3 412 aaKnown RBP37.35■■■■□ 3.57
SYNPO-203ENST00000518872 TLL2Q9Y6L7 1015 aa37.35■■■■□ 3.57
SYNPO-203ENST00000518872 RBM26Q5T8P6 1007 aaKnown RBP37.34■■■■□ 3.57
SYNPO-203ENST00000518872 SNAP23O00161 211 aa37.33■■■■□ 3.57
SYNPO-203ENST00000518872 CELF2O95319 508 aaKnown RBP37.33■■■■□ 3.57
SYNPO-203ENST00000518872 DCPSQ96C86 337 aaKnown RBP37.33■■■■□ 3.57
SYNPO-203ENST00000518872 MYOZ2Q9NPC6 264 aa37.33■■■■□ 3.57
SYNPO-203ENST00000518872 KIF16BQ96L93 1317 aa37.33■■■■□ 3.57
SYNPO-203ENST00000518872 HSPA1AP0DMV8 641 aaKnown RBP37.32■■■■□ 3.56
SYNPO-203ENST00000518872 HSPA1BP0DMV9 641 aaKnown RBP37.32■■■■□ 3.56
SYNPO-203ENST00000518872 TTLL5Q6EMB2 1281 aa37.32■■■■□ 3.56
SYNPO-203ENST00000518872 KRT26Q7Z3Y9 468 aa37.32■■■■□ 3.56
SYNPO-203ENST00000518872 ARHGAP45Q92619 1136 aa37.32■■■■□ 3.56
SYNPO-203ENST00000518872 RIPOR2Q9Y4F9 1068 aa37.32■■■■□ 3.56
SYNPO-203ENST00000518872 THSD7BQ9C0I4 1608 aa37.32■■■■□ 3.56
SYNPO-203ENST00000518872 UBE4AQ14139 1066 aa37.31■■■■□ 3.56
SYNPO-203ENST00000518872 USP48Q86UV5 1035 aa37.31■■■■□ 3.56
SYNPO-203ENST00000518872 IL1R1P14778 569 aa37.3■■■■□ 3.56
SYNPO-203ENST00000518872 ZNF804AQ7Z570 1209 aa37.3■■■■□ 3.56
SYNPO-203ENST00000518872 HHIPL1Q96JK4 782 aa37.3■■■■□ 3.56
SYNPO-203ENST00000518872 MROH5Q6ZUA9 1318 aa37.3■■■■□ 3.56
SYNPO-203ENST00000518872 SAPCD2Q86UD0 394 aa37.29■■■■□ 3.56
SYNPO-203ENST00000518872 PUS3Q9BZE2 481 aaKnown RBP37.29■■■■□ 3.56
SYNPO-203ENST00000518872 GGA3Q9NZ52 723 aa37.29■■■■□ 3.56
SYNPO-203ENST00000518872 OGFOD1Q8N543 542 aa37.28■■■■□ 3.56
SYNPO-203ENST00000518872 PITPNM2Q9BZ72 1349 aa37.28■■■■□ 3.56
SYNPO-203ENST00000518872 WDR33Q9C0J8 1336 aaKnown RBP37.28■■■■□ 3.56
SYNPO-203ENST00000518872 SCARF1Q14162 830 aa37.27■■■■□ 3.56
SYNPO-203ENST00000518872 MXD3Q9BW11 206 aa37.27■■■■□ 3.56
SYNPO-203ENST00000518872 ECE1P42892 770 aa37.26■■■■□ 3.56
SYNPO-203ENST00000518872 GTF2IP78347 998 aa37.26■■■■□ 3.56
SYNPO-203ENST00000518872 FBXW7Q969H0 707 aa37.26■■■■□ 3.56
SYNPO-203ENST00000518872 PLIN1O60240 522 aa37.25■■■■□ 3.55
SYNPO-203ENST00000518872 SULF1Q8IWU6 871 aa37.25■■■■□ 3.55
SYNPO-203ENST00000518872 HNRNPUQ00839 825 aaKnown RBP eCLIP37.24■■■■□ 3.55
SYNPO-203ENST00000518872 ASTN2O75129 1339 aaPredicted RBP37.24■■■■□ 3.55
SYNPO-203ENST00000518872 FKBP1AP62942 108 aaKnown RBP37.23■■■■□ 3.55
SYNPO-203ENST00000518872 CAPNS2Q96L46 248 aa37.23■■■■□ 3.55
SYNPO-203ENST00000518872 ADM5C9JUS6 153 aa37.22■■■■□ 3.55
SYNPO-203ENST00000518872 UBTFL1P0CB47 393 aaPredicted RBP37.22■■■■□ 3.55
SYNPO-203ENST00000518872 ANGEL2Q5VTE6 544 aaKnown RBP37.22■■■■□ 3.55
SYNPO-203ENST00000518872 ZNF408Q9H9D4 720 aa37.22■■■■□ 3.55
SYNPO-203ENST00000518872 HDAC5Q9UQL6 1122 aa37.22■■■■□ 3.55
SYNPO-203ENST00000518872 LRRC24Q50LG9 513 aa37.21■■■■□ 3.55
SYNPO-203ENST00000518872 VGLL2Q8N8G2 317 aa37.21■■■■□ 3.55
SYNPO-203ENST00000518872 HDAC9Q9UKV0 1011 aa37.21■■■■□ 3.55
SYNPO-203ENST00000518872 RFX5P48382 616 aaPredicted RBP37.2■■■■□ 3.55
SYNPO-203ENST00000518872 INTS3Q68E01 1043 aaKnown RBP37.2■■■■□ 3.55
SYNPO-203ENST00000518872 DLK2Q6UY11 383 aa37.19■■■■□ 3.54
SYNPO-203ENST00000518872 WBP1LQ9NX94 342 aa37.19■■■■□ 3.54
SYNPO-203ENST00000518872 FAM205AQ6ZU69 1335 aa37.18■■■■□ 3.54
SYNPO-203ENST00000518872 WNT10BO00744 389 aa37.18■■■■□ 3.54
SYNPO-203ENST00000518872 IPO8O15397 1037 aaKnown RBP37.18■■■■□ 3.54
SYNPO-203ENST00000518872 SASH1O94885 1247 aa37.18■■■■□ 3.54
SYNPO-203ENST00000518872 CYP4F22Q6NT55 531 aa37.18■■■■□ 3.54
SYNPO-203ENST00000518872 KIAA0825Q8IV33 1275 aa37.18■■■■□ 3.54
SYNPO-203ENST00000518872 TDRD7Q8NHU6 1098 aaKnown RBP37.18■■■■□ 3.54
SYNPO-203ENST00000518872 ZBED3Q96IU2 234 aaPredicted RBP37.18■■■■□ 3.54
SYNPO-203ENST00000518872 PDE8BO95263 885 aa37.17■■■■□ 3.54
SYNPO-203ENST00000518872 NBPF9Q3BBW0 867 aa37.17■■■■□ 3.54
SYNPO-203ENST00000518872 METTL24Q5JXM2 366 aa37.17■■■■□ 3.54
SYNPO-203ENST00000518872 CERS5Q8N5B7 392 aa37.17■■■■□ 3.54
SYNPO-203ENST00000518872 FAM84BQ96KN1 310 aaPredicted RBP37.17■■■■□ 3.54
SYNPO-203ENST00000518872 ECM29Q5VYK3 1845 aa37.16■■■■□ 3.54
SYNPO-203ENST00000518872 HIBADHP31937 336 aaKnown RBP37.16■■■■□ 3.54
SYNPO-203ENST00000518872 MAP2K1Q02750 393 aaPredicted RBP37.16■■■■□ 3.54
SYNPO-203ENST00000518872 KLHDC4Q8TBB5 520 aa37.16■■■■□ 3.54
SYNPO-203ENST00000518872 GBA2Q9HCG7 927 aaPredicted RBP37.16■■■■□ 3.54
SYNPO-203ENST00000518872 FBXO3Q9UK99 471 aa37.16■■■■□ 3.54
SYNPO-203ENST00000518872 ARAP2Q8WZ64 1704 aa37.16■■■■□ 3.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms