RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 LDHAL6AQ6ZMR3 332 aa17.53■□□□□ 0.4
NUP54-217ENST00000514987 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.53■□□□□ 0.4
NUP54-217ENST00000514987 GOLGA6L4A6NEF3 574 aa17.53■□□□□ 0.4
NUP54-217ENST00000514987 IMMTQ16891 758 aaKnown RBP17.53■□□□□ 0.4
NUP54-217ENST00000514987 ATL3Q6DD88 541 aa17.53■□□□□ 0.4
NUP54-217ENST00000514987 RNF214Q8ND24 703 aa17.53■□□□□ 0.4
NUP54-217ENST00000514987 CFAP45Q9UL16 551 aa17.53■□□□□ 0.4
NUP54-217ENST00000514987 MYH7P12883 1935 aa17.52■□□□□ 0.4
NUP54-217ENST00000514987 RIC1Q4ADV7 1423 aa17.52■□□□□ 0.4
NUP54-217ENST00000514987 IRS4O14654 1257 aaPredicted RBP17.52■□□□□ 0.39
NUP54-217ENST00000514987 CHGBP05060 677 aa17.52■□□□□ 0.39
NUP54-217ENST00000514987 ITGA6P23229 1130 aa17.52■□□□□ 0.39
NUP54-217ENST00000514987 ADORA1P30542 326 aa17.52■□□□□ 0.39
NUP54-217ENST00000514987 HLFQ16534 295 aa17.52■□□□□ 0.39
NUP54-217ENST00000514987 WASHC4Q2M389 1173 aa17.52■□□□□ 0.39
NUP54-217ENST00000514987 TTC6Q86TZ1 520 aa17.52■□□□□ 0.39
NUP54-217ENST00000514987 SPATA32Q96LK8 384 aa17.52■□□□□ 0.39
NUP54-217ENST00000514987 CNNM1Q9NRU3 951 aa17.52■□□□□ 0.39
NUP54-217ENST00000514987 TRMT112Q9UI30 125 aaKnown RBP17.52■□□□□ 0.39
NUP54-217ENST00000514987 THRAP3Q9Y2W1 955 aaKnown RBP17.52■□□□□ 0.39
NUP54-217ENST00000514987 COL16A1Q07092 1604 aaPredicted RBP17.52■□□□□ 0.39
NUP54-217ENST00000514987 NUP98P52948 1817 aa17.52■□□□□ 0.39
NUP54-217ENST00000514987 WDR19Q8NEZ3 1342 aa17.51■□□□□ 0.39
NUP54-217ENST00000514987 M0R2C6 588 aa17.51■□□□□ 0.39
NUP54-217ENST00000514987 UQCRFS1P1P0C7P4 283 aa17.51■□□□□ 0.39
NUP54-217ENST00000514987 EVCP57679 992 aa17.51■□□□□ 0.39
NUP54-217ENST00000514987 SCRN1Q12765 414 aa17.51■□□□□ 0.39
NUP54-217ENST00000514987 FERMT3Q86UX7 667 aa17.51■□□□□ 0.39
NUP54-217ENST00000514987 OSBP2Q969R2 916 aa17.51■□□□□ 0.39
NUP54-217ENST00000514987 DDX19AQ9NUU7 478 aaKnown RBP17.51■□□□□ 0.39
NUP54-217ENST00000514987 CCDC192P0DO97 292 aa17.5■□□□□ 0.39
NUP54-217ENST00000514987 GPTP24298 496 aa17.5■□□□□ 0.39
NUP54-217ENST00000514987 RESTQ13127 1097 aa17.5■□□□□ 0.39
NUP54-217ENST00000514987 DZIP3Q86Y13 1208 aaKnown RBP17.5■□□□□ 0.39
NUP54-217ENST00000514987 FUCA2Q9BTY2 467 aa17.5■□□□□ 0.39
NUP54-217ENST00000514987 ROBO1Q9Y6N7 1651 aa17.5■□□□□ 0.39
NUP54-217ENST00000514987 ZNF500O60304 480 aaPredicted RBP17.49■□□□□ 0.39
NUP54-217ENST00000514987 JAK2O60674 1132 aa17.49■□□□□ 0.39
NUP54-217ENST00000514987 ZAP70P43403 619 aa17.49■□□□□ 0.39
NUP54-217ENST00000514987 ZNF34Q8IZ26 560 aa17.49■□□□□ 0.39
NUP54-217ENST00000514987 NSUN7Q8NE18 718 aaKnown RBP17.49■□□□□ 0.39
NUP54-217ENST00000514987 LEO1Q8WVC0 666 aaPredicted RBP17.49■□□□□ 0.39
NUP54-217ENST00000514987 SLC4A9Q96Q91 983 aa17.49■□□□□ 0.39
NUP54-217ENST00000514987 GREM2Q9H772 168 aa17.49■□□□□ 0.39
NUP54-217ENST00000514987 ZBTB1Q9Y2K1 713 aa17.49■□□□□ 0.39
NUP54-217ENST00000514987 ZKSCAN5Q9Y2L8 839 aa17.49■□□□□ 0.39
NUP54-217ENST00000514987 MROH5Q6ZUA9 1318 aa17.49■□□□□ 0.39
NUP54-217ENST00000514987 DHX16O60231 1041 aaKnown RBP17.49■□□□□ 0.39
NUP54-217ENST00000514987 MAP3K11Q16584 847 aa17.49■□□□□ 0.39
NUP54-217ENST00000514987 RGS22Q8NE09 1264 aa17.49■□□□□ 0.39
NUP54-217ENST00000514987 NUP62CLQ9H1M0 184 aa17.49■□□□□ 0.39
NUP54-217ENST00000514987 ATRNO75882 1429 aa17.48■□□□□ 0.39
NUP54-217ENST00000514987 PDE8BO95263 885 aa17.48■□□□□ 0.39
NUP54-217ENST00000514987 APOBRQ0VD83 1088 aa17.48■□□□□ 0.39
NUP54-217ENST00000514987 VGLL2Q8N8G2 317 aa17.48■□□□□ 0.39
NUP54-217ENST00000514987 DOT1LQ8TEK3 1739 aa17.48■□□□□ 0.39
NUP54-217ENST00000514987 LRP5O75197 1615 aa17.47■□□□□ 0.39
NUP54-217ENST00000514987 PTPDC1A2A3K4 754 aa17.47■□□□□ 0.39
NUP54-217ENST00000514987 PTMAP06454 111 aaKnown RBP17.47■□□□□ 0.39
NUP54-217ENST00000514987 PDIA3P30101 505 aaKnown RBP17.47■□□□□ 0.39
NUP54-217ENST00000514987 UBE3CQ15386 1083 aa17.47■□□□□ 0.39
NUP54-217ENST00000514987 SLFNL1Q499Z3 407 aa17.47■□□□□ 0.39
NUP54-217ENST00000514987 NCOA7Q8NI08 942 aa17.47■□□□□ 0.39
NUP54-217ENST00000514987 SYTL4Q96C24 671 aaPredicted RBP17.47■□□□□ 0.39
NUP54-217ENST00000514987 CCDC85AQ96PX6 553 aaPredicted RBP17.47■□□□□ 0.39
NUP54-217ENST00000514987 CICQ96RK0 1608 aaPredicted RBP17.47■□□□□ 0.39
NUP54-217ENST00000514987 AKAP11Q9UKA4 1901 aa17.46■□□□□ 0.39
NUP54-217ENST00000514987 FGAP02671 866 aa17.46■□□□□ 0.39
NUP54-217ENST00000514987 HCLS1P14317 486 aaPredicted RBP17.46■□□□□ 0.39
NUP54-217ENST00000514987 ARID4AP29374 1257 aaPredicted RBP17.46■□□□□ 0.39
NUP54-217ENST00000514987 ADD2P35612 726 aa17.46■□□□□ 0.39
NUP54-217ENST00000514987 EIF5P55010 431 aaKnown RBP17.46■□□□□ 0.39
NUP54-217ENST00000514987 SCARF1Q14162 830 aa17.46■□□□□ 0.39
NUP54-217ENST00000514987 PUM3Q15397 648 aaKnown RBP17.46■□□□□ 0.39
NUP54-217ENST00000514987 PARP10Q53GL7 1025 aa17.46■□□□□ 0.39
NUP54-217ENST00000514987 GIMAP6Q6P9H5 292 aa17.46■□□□□ 0.39
NUP54-217ENST00000514987 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.46■□□□□ 0.39
NUP54-217ENST00000514987 LPIN2Q92539 896 aa17.46■□□□□ 0.39
NUP54-217ENST00000514987 ZNF396Q96N95 335 aaPredicted RBP17.46■□□□□ 0.39
NUP54-217ENST00000514987 LRRC2Q9BYS8 371 aa17.46■□□□□ 0.39
NUP54-217ENST00000514987 TBC1D2BQ9UPU7 963 aa17.46■□□□□ 0.39
NUP54-217ENST00000514987 ARAP2Q8WZ64 1704 aa17.46■□□□□ 0.39
NUP54-217ENST00000514987 SALL1Q9NSC2 1324 aa17.46■□□□□ 0.39
NUP54-217ENST00000514987 ZNF213O14771 459 aa17.45■□□□□ 0.38
NUP54-217ENST00000514987 KDM4AO75164 1064 aa17.45■□□□□ 0.38
NUP54-217ENST00000514987 RALYLQ86SE5 291 aaKnown RBP17.45■□□□□ 0.38
NUP54-217ENST00000514987 DDX11Q96FC9 970 aa17.45■□□□□ 0.38
NUP54-217ENST00000514987 NAP1L5Q96NT1 182 aaPredicted RBP17.45■□□□□ 0.38
NUP54-217ENST00000514987 CCDC87Q9NVE4 849 aa17.45■□□□□ 0.38
NUP54-217ENST00000514987 TFIP11Q9UBB9 837 aaKnown RBP17.45■□□□□ 0.38
NUP54-217ENST00000514987 MYH15Q9Y2K3 1946 aa17.45■□□□□ 0.38
NUP54-217ENST00000514987 RREB1Q92766 1687 aa17.45■□□□□ 0.38
NUP54-217ENST00000514987 NWD2Q9ULI1 1742 aa17.45■□□□□ 0.38
NUP54-217ENST00000514987 GPAA1O43292 621 aa17.45■□□□□ 0.38
NUP54-217ENST00000514987 OFD1O75665 1012 aa17.45■□□□□ 0.38
NUP54-217ENST00000514987 CTDNEP1O95476 244 aa17.45■□□□□ 0.38
NUP54-217ENST00000514987 CAVIN2O95810 425 aa17.45■□□□□ 0.38
NUP54-217ENST00000514987 MCAMP43121 646 aa17.45■□□□□ 0.38
NUP54-217ENST00000514987 FAM173BQ6P4H8 233 aa17.45■□□□□ 0.38
NUP54-217ENST00000514987 SYNE4Q8N205 404 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms