RNA–Protein interactions for RNA: ENST00000514660.1

NEDD9-215, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 473 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-215ENST00000514660 MYCP01106 439 aaPredicted RBP13.93□□□□□ -0.18
NEDD9-215ENST00000514660 KRT24Q2M2I5 525 aa13.93□□□□□ -0.18
NEDD9-215ENST00000514660 HSP90AB3PQ58FF7 597 aa13.93□□□□□ -0.18
NEDD9-215ENST00000514660 EFCC1Q9HA90 598 aa13.93□□□□□ -0.18
NEDD9-215ENST00000514660 ANGEL1Q9UNK9 670 aaKnown RBP13.93□□□□□ -0.18
NEDD9-215ENST00000514660 PTCH2Q9Y6C5 1203 aa13.93□□□□□ -0.18
NEDD9-215ENST00000514660 ALDH1A1P00352 501 aa13.92□□□□□ -0.18
NEDD9-215ENST00000514660 PPP2R1AP30153 589 aa13.92□□□□□ -0.18
NEDD9-215ENST00000514660 DACT2Q5SW24 774 aa13.92□□□□□ -0.18
NEDD9-215ENST00000514660 SHISA4Q96DD7 197 aa13.92□□□□□ -0.18
NEDD9-215ENST00000514660 ERO1AQ96HE7 468 aa13.92□□□□□ -0.18
NEDD9-215ENST00000514660 ZBED3Q96IU2 234 aaPredicted RBP13.92□□□□□ -0.18
NEDD9-215ENST00000514660 WNK4Q96J92 1243 aa13.92□□□□□ -0.18
NEDD9-215ENST00000514660 NUDCQ9Y266 331 aa13.92□□□□□ -0.18
NEDD9-215ENST00000514660 USP17L3A6NCW0 530 aa13.91□□□□□ -0.18
NEDD9-215ENST00000514660 USP17L4A6NCW7 530 aa13.91□□□□□ -0.18
NEDD9-215ENST00000514660 MANSC4A6NHS7 340 aaPredicted RBP13.91□□□□□ -0.18
NEDD9-215ENST00000514660 USP17L1Q7RTZ2 530 aa13.91□□□□□ -0.18
NEDD9-215ENST00000514660 CFAP53Q96M91 514 aa13.91□□□□□ -0.18
NEDD9-215ENST00000514660 GGA1Q9UJY5 639 aa13.91□□□□□ -0.18
NEDD9-215ENST00000514660 ARMC9Q7Z3E5 817 aa13.9□□□□□ -0.18
NEDD9-215ENST00000514660 PCDHAC2Q9Y5I4 1007 aa13.9□□□□□ -0.18
NEDD9-215ENST00000514660 AOX1Q06278 1338 aa13.9□□□□□ -0.19
NEDD9-215ENST00000514660 OTOFQ9HC10 1997 aa13.89□□□□□ -0.19
NEDD9-215ENST00000514660 IRS4O14654 1257 aaPredicted RBP13.89□□□□□ -0.19
NEDD9-215ENST00000514660 SP3Q02447 781 aa13.89□□□□□ -0.19
NEDD9-215ENST00000514660 NFE2L2Q16236 605 aa13.89□□□□□ -0.19
NEDD9-215ENST00000514660 MAP3K11Q16584 847 aa13.89□□□□□ -0.19
NEDD9-215ENST00000514660 TXNRD3Q86VQ6 643 aa13.89□□□□□ -0.19
NEDD9-215ENST00000514660 SLC10A4Q96EP9 437 aa13.89□□□□□ -0.19
NEDD9-215ENST00000514660 LRCH3Q96II8 777 aa13.89□□□□□ -0.19
NEDD9-215ENST00000514660 TMEM106CQ9BVX2 250 aa13.89□□□□□ -0.19
NEDD9-215ENST00000514660 ANKIB1Q9P2G1 1089 aa13.89□□□□□ -0.19
NEDD9-215ENST00000514660 G3V3G9 751 aa13.88□□□□□ -0.19
NEDD9-215ENST00000514660 NF2P35240 595 aa13.88□□□□□ -0.19
NEDD9-215ENST00000514660 INHBEP58166 350 aa13.88□□□□□ -0.19
NEDD9-215ENST00000514660 DCAF8Q5TAQ9 597 aa13.88□□□□□ -0.19
NEDD9-215ENST00000514660 SH3TC2Q8TF17 1288 aa13.88□□□□□ -0.19
NEDD9-215ENST00000514660 JARID2Q92833 1246 aaPredicted RBP13.88□□□□□ -0.19
NEDD9-215ENST00000514660 TSPYL4Q9UJ04 414 aa13.88□□□□□ -0.19
NEDD9-215ENST00000514660 TESPA1A2RU30 521 aaPredicted RBP13.87□□□□□ -0.19
NEDD9-215ENST00000514660 ZBTB48P10074 688 aaPredicted RBP13.87□□□□□ -0.19
NEDD9-215ENST00000514660 PODNQ7Z5L7 613 aa13.87□□□□□ -0.19
NEDD9-215ENST00000514660 CCDC85AQ96PX6 553 aaPredicted RBP13.87□□□□□ -0.19
NEDD9-215ENST00000514660 ARHGAP39Q9C0H5 1083 aa13.87□□□□□ -0.19
NEDD9-215ENST00000514660 CHPF2Q9P2E5 772 aa13.87□□□□□ -0.19
NEDD9-215ENST00000514660 SPEF2Q9C093 1822 aa13.87□□□□□ -0.19
NEDD9-215ENST00000514660 SLC4A8Q2Y0W8 1093 aa13.86□□□□□ -0.19
NEDD9-215ENST00000514660 SLC9C1Q4G0N8 1177 aa13.86□□□□□ -0.19
NEDD9-215ENST00000514660 UBE2Q1Q7Z7E8 422 aa13.86□□□□□ -0.19
NEDD9-215ENST00000514660 PLBD2Q8NHP8 589 aa13.86□□□□□ -0.19
NEDD9-215ENST00000514660 MS4A4AQ96JQ5 239 aa13.86□□□□□ -0.19
NEDD9-215ENST00000514660 KLRK1P26718 216 aa13.85□□□□□ -0.19
NEDD9-215ENST00000514660 MTFR1Q15390 333 aa13.85□□□□□ -0.19
NEDD9-215ENST00000514660 DEFB129Q9H1M3 183 aa13.85□□□□□ -0.19
NEDD9-215ENST00000514660 XDHP47989 1333 aa13.85□□□□□ -0.19
NEDD9-215ENST00000514660 USP2O75604 605 aaPredicted RBP13.84□□□□□ -0.19
NEDD9-215ENST00000514660 ANKRD13DQ6ZTN6 518 aa13.84□□□□□ -0.19
NEDD9-215ENST00000514660 KIAA0825Q8IV33 1275 aa13.84□□□□□ -0.19
NEDD9-215ENST00000514660 ECM29Q5VYK3 1845 aa13.84□□□□□ -0.19
NEDD9-215ENST00000514660 LAMA3Q16787 3333 aa13.83□□□□□ -0.2
NEDD9-215ENST00000514660 CTGFP29279 349 aa13.83□□□□□ -0.2
NEDD9-215ENST00000514660 MNX1P50219 401 aaPredicted RBP13.83□□□□□ -0.2
NEDD9-215ENST00000514660 TRIM28Q13263 835 aaKnown RBP13.83□□□□□ -0.2
NEDD9-215ENST00000514660 NBPF12Q5TAG4 269 aaPredicted RBP13.83□□□□□ -0.2
NEDD9-215ENST00000514660 APOBEC3FQ8IUX4 373 aaKnown RBP13.83□□□□□ -0.2
NEDD9-215ENST00000514660 BRI3BPQ8WY22 251 aa13.83□□□□□ -0.2
NEDD9-215ENST00000514660 DPF3Q92784 378 aa13.83□□□□□ -0.2
NEDD9-215ENST00000514660 MED23Q9ULK4 1368 aa13.83□□□□□ -0.2
NEDD9-215ENST00000514660 ATP2B4P23634 1241 aa13.82□□□□□ -0.2
NEDD9-215ENST00000514660 STRIP1Q5VSL9 837 aa13.82□□□□□ -0.2
NEDD9-215ENST00000514660 CDAN1Q8IWY9 1227 aa13.82□□□□□ -0.2
NEDD9-215ENST00000514660 FAM43AQ8N2R8 423 aa13.82□□□□□ -0.2
NEDD9-215ENST00000514660 CERS5Q8N5B7 392 aa13.82□□□□□ -0.2
NEDD9-215ENST00000514660 FBXW7Q969H0 707 aa13.82□□□□□ -0.2
NEDD9-215ENST00000514660 RNF216Q9NWF9 866 aaPredicted RBP13.82□□□□□ -0.2
NEDD9-215ENST00000514660 ALPK3Q96L96 1907 aa13.82□□□□□ -0.2
NEDD9-215ENST00000514660 OGFOD1Q8N543 542 aa13.81□□□□□ -0.2
NEDD9-215ENST00000514660 ZBTB38Q8NAP3 1195 aaPredicted RBP13.81□□□□□ -0.2
NEDD9-215ENST00000514660 COL25A1Q9BXS0 654 aaPredicted RBP13.81□□□□□ -0.2
NEDD9-215ENST00000514660 MINPP1Q9UNW1 487 aa13.81□□□□□ -0.2
NEDD9-215ENST00000514660 CLSPNQ9HAW4 1339 aa13.81□□□□□ -0.2
NEDD9-215ENST00000514660 COL1A1P02452 1464 aaPredicted RBP13.8□□□□□ -0.2
NEDD9-215ENST00000514660 ZBTB7BO15156 539 aaPredicted RBP13.8□□□□□ -0.2
NEDD9-215ENST00000514660 ECM2O94769 699 aaPredicted RBP13.8□□□□□ -0.2
NEDD9-215ENST00000514660 NBPF11Q86T75 865 aa13.8□□□□□ -0.2
NEDD9-215ENST00000514660 ELP3Q9H9T3 547 aa13.8□□□□□ -0.2
NEDD9-215ENST00000514660 CLRN2A0PK11 232 aa13.79□□□□□ -0.2
NEDD9-215ENST00000514660 OPTNQ96CV9 577 aa13.79□□□□□ -0.2
NEDD9-215ENST00000514660 CCT4P50991 539 aaKnown RBP13.78□□□□□ -0.2
NEDD9-215ENST00000514660 GTF2IP78347 998 aa13.78□□□□□ -0.2
NEDD9-215ENST00000514660 TAF1CQ15572 869 aaPredicted RBP13.78□□□□□ -0.2
NEDD9-215ENST00000514660 TTLL5Q6EMB2 1281 aa13.78□□□□□ -0.2
NEDD9-215ENST00000514660 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.78□□□□□ -0.2
NEDD9-215ENST00000514660 Q7L0L9 218 aa13.78□□□□□ -0.2
NEDD9-215ENST00000514660 ANKRD18AQ8IVF6 992 aa13.78□□□□□ -0.2
NEDD9-215ENST00000514660 PRMT6Q96LA8 375 aaPredicted RBP13.78□□□□□ -0.2
NEDD9-215ENST00000514660 ZNF804BA4D1E1 1349 aa13.78□□□□□ -0.2
NEDD9-215ENST00000514660 MYO3BQ8WXR4 1341 aa13.78□□□□□ -0.2
NEDD9-215ENST00000514660 SNAP23O00161 211 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms