RNA–Protein interactions for RNA: ENST00000514439.1

CPNE4-211, Transcript of copine 4, humanhuman

TSL 1 (best)

Gene CPNE4, Length 2,312 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-211ENST00000514439 LRRFIP1Q32MZ4 808 aaKnown RBP9.73□□□□□ -0.85
CPNE4-211ENST00000514439 INTS5Q6P9B9 1019 aaKnown RBP9.73□□□□□ -0.85
CPNE4-211ENST00000514439 CDC37L1Q7L3B6 337 aa9.73□□□□□ -0.85
CPNE4-211ENST00000514439 VGLL2Q8N8G2 317 aa9.73□□□□□ -0.85
CPNE4-211ENST00000514439 MARCH10Q8NA82 808 aaPredicted RBP9.73□□□□□ -0.85
CPNE4-211ENST00000514439 LRRC2Q9BYS8 371 aa9.73□□□□□ -0.85
CPNE4-211ENST00000514439 CCDC87Q9NVE4 849 aa9.73□□□□□ -0.85
CPNE4-211ENST00000514439 PHLPP1O60346 1717 aa9.73□□□□□ -0.85
CPNE4-211ENST00000514439 NUP98P52948 1817 aa9.73□□□□□ -0.85
CPNE4-211ENST00000514439 TCHHQ07283 1943 aa9.72□□□□□ -0.85
CPNE4-211ENST00000514439 NUTM2BA6NNL0 878 aaPredicted RBP9.72□□□□□ -0.85
CPNE4-211ENST00000514439 NUTM2EB1AL46 878 aaPredicted RBP9.72□□□□□ -0.85
CPNE4-211ENST00000514439 ZFYP08048 801 aaPredicted RBP9.72□□□□□ -0.85
CPNE4-211ENST00000514439 HMGB1P09429 215 aaKnown RBP9.72□□□□□ -0.85
CPNE4-211ENST00000514439 PDIA4P13667 645 aaKnown RBP9.72□□□□□ -0.85
CPNE4-211ENST00000514439 HSP90B1P14625 803 aaKnown RBP9.72□□□□□ -0.85
CPNE4-211ENST00000514439 ATP6V1AP38606 617 aa9.72□□□□□ -0.85
CPNE4-211ENST00000514439 CRKLP46109 303 aaKnown RBP9.72□□□□□ -0.85
CPNE4-211ENST00000514439 UBE2HP62256 183 aa9.72□□□□□ -0.85
CPNE4-211ENST00000514439 NUTM2AQ8IVF1 878 aaPredicted RBP9.72□□□□□ -0.85
CPNE4-211ENST00000514439 ANP32BQ92688 251 aaKnown RBP9.72□□□□□ -0.85
CPNE4-211ENST00000514439 BRF1Q92994 677 aa9.72□□□□□ -0.85
CPNE4-211ENST00000514439 SPATA31A5Q5VU36 1347 aa9.72□□□□□ -0.85
CPNE4-211ENST00000514439 SPATA31A7Q8IWB4 1347 aa9.72□□□□□ -0.85
CPNE4-211ENST00000514439 LOC102724428A0A0B4J2F2 783 aa9.72□□□□□ -0.85
CPNE4-211ENST00000514439 E7EWF7 191 aa9.72□□□□□ -0.85
CPNE4-211ENST00000514439 MCAMP43121 646 aa9.72□□□□□ -0.85
CPNE4-211ENST00000514439 SIK1P57059 783 aa9.72□□□□□ -0.85
CPNE4-211ENST00000514439 FGD1P98174 961 aa9.72□□□□□ -0.85
CPNE4-211ENST00000514439 WASHC4Q2M389 1173 aa9.72□□□□□ -0.85
CPNE4-211ENST00000514439 DHX32Q7L7V1 743 aaKnown RBP9.72□□□□□ -0.85
CPNE4-211ENST00000514439 PPP1R9BQ96SB3 815 aa9.72□□□□□ -0.85
CPNE4-211ENST00000514439 LRP5O75197 1615 aa9.72□□□□□ -0.85
CPNE4-211ENST00000514439 MYH3P11055 1940 aa9.71□□□□□ -0.85
CPNE4-211ENST00000514439 FOXP2O15409 715 aa9.71□□□□□ -0.85
CPNE4-211ENST00000514439 JAK2O60674 1132 aa9.71□□□□□ -0.85
CPNE4-211ENST00000514439 PHF14O94880 888 aa9.71□□□□□ -0.85
CPNE4-211ENST00000514439 CSPP1Q1MSJ5 1256 aa9.71□□□□□ -0.85
CPNE4-211ENST00000514439 TTLL5Q6EMB2 1281 aa9.71□□□□□ -0.85
CPNE4-211ENST00000514439 FERMT3Q86UX7 667 aa9.71□□□□□ -0.85
CPNE4-211ENST00000514439 PDE8BO95263 885 aa9.71□□□□□ -0.86
CPNE4-211ENST00000514439 EXOSC10Q01780 885 aaKnown RBP9.71□□□□□ -0.86
CPNE4-211ENST00000514439 ITPK1Q13572 414 aa9.71□□□□□ -0.86
CPNE4-211ENST00000514439 TPRNQ4KMQ1 711 aa9.71□□□□□ -0.86
CPNE4-211ENST00000514439 SUSD4Q5VX71 490 aa9.71□□□□□ -0.86
CPNE4-211ENST00000514439 APPBP2Q92624 585 aa9.71□□□□□ -0.86
CPNE4-211ENST00000514439 TRIM44Q96DX7 344 aaPredicted RBP9.71□□□□□ -0.86
CPNE4-211ENST00000514439 CAMTA2O94983 1202 aa9.7□□□□□ -0.86
CPNE4-211ENST00000514439 HCLS1P14317 486 aaPredicted RBP9.7□□□□□ -0.86
CPNE4-211ENST00000514439 SCRN1Q12765 414 aa9.7□□□□□ -0.86
CPNE4-211ENST00000514439 CCDC183Q5T5S1 534 aa9.7□□□□□ -0.86
CPNE4-211ENST00000514439 ZNF512BQ96KM6 892 aaPredicted RBP9.7□□□□□ -0.86
CPNE4-211ENST00000514439 AGXT2Q9BYV1 514 aa9.7□□□□□ -0.86
CPNE4-211ENST00000514439 PUS7LQ9H0K6 701 aaKnown RBP9.7□□□□□ -0.86
CPNE4-211ENST00000514439 TSPY26PQ9H489 355 aa9.7□□□□□ -0.86
CPNE4-211ENST00000514439 FAM177BA6PVY3 158 aa9.7□□□□□ -0.86
CPNE4-211ENST00000514439 PFKFB2O60825 505 aa9.7□□□□□ -0.86
CPNE4-211ENST00000514439 APOBRQ0VD83 1088 aa9.7□□□□□ -0.86
CPNE4-211ENST00000514439 FAM173BQ6P4H8 233 aa9.7□□□□□ -0.86
CPNE4-211ENST00000514439 BARGINQ6ZT62 677 aa9.7□□□□□ -0.86
CPNE4-211ENST00000514439 AK7Q96M32 723 aa9.7□□□□□ -0.86
CPNE4-211ENST00000514439 LAMA4Q16363 1823 aa9.69□□□□□ -0.86
CPNE4-211ENST00000514439 GPAA1O43292 621 aa9.69□□□□□ -0.86
CPNE4-211ENST00000514439 PHKA1P46020 1223 aa9.69□□□□□ -0.86
CPNE4-211ENST00000514439 KRT85P78386 507 aa9.69□□□□□ -0.86
CPNE4-211ENST00000514439 PUM3Q15397 648 aaKnown RBP9.69□□□□□ -0.86
CPNE4-211ENST00000514439 CCDC102BQ68D86 513 aa9.69□□□□□ -0.86
CPNE4-211ENST00000514439 CHST3Q7LGC8 479 aa9.69□□□□□ -0.86
CPNE4-211ENST00000514439 RNF214Q8ND24 703 aa9.69□□□□□ -0.86
CPNE4-211ENST00000514439 HELBQ8NG08 1087 aaPredicted RBP9.69□□□□□ -0.86
CPNE4-211ENST00000514439 UTP14AQ9BVJ6 771 aaKnown RBP9.69□□□□□ -0.86
CPNE4-211ENST00000514439 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.69□□□□□ -0.86
CPNE4-211ENST00000514439 CTNNA3Q9UI47 895 aa9.69□□□□□ -0.86
CPNE4-211ENST00000514439 RREB1Q92766 1687 aa9.69□□□□□ -0.86
CPNE4-211ENST00000514439 MROH5Q6ZUA9 1318 aa9.69□□□□□ -0.86
CPNE4-211ENST00000514439 FGAP02671 866 aa9.68□□□□□ -0.86
CPNE4-211ENST00000514439 FGFR2P21802 821 aa9.68□□□□□ -0.86
CPNE4-211ENST00000514439 ARID4AP29374 1257 aaPredicted RBP9.68□□□□□ -0.86
CPNE4-211ENST00000514439 ADD2P35612 726 aa9.68□□□□□ -0.86
CPNE4-211ENST00000514439 HAND2P61296 217 aa9.68□□□□□ -0.86
CPNE4-211ENST00000514439 PIP4K2BP78356 416 aa9.68□□□□□ -0.86
CPNE4-211ENST00000514439 IMMTQ16891 758 aaKnown RBP9.68□□□□□ -0.86
CPNE4-211ENST00000514439 PARP10Q53GL7 1025 aa9.68□□□□□ -0.86
CPNE4-211ENST00000514439 TTC6Q86TZ1 520 aa9.68□□□□□ -0.86
CPNE4-211ENST00000514439 SMARCC2Q8TAQ2 1214 aa9.68□□□□□ -0.86
CPNE4-211ENST00000514439 LPIN2Q92539 896 aa9.68□□□□□ -0.86
CPNE4-211ENST00000514439 DDX11Q96FC9 970 aa9.68□□□□□ -0.86
CPNE4-211ENST00000514439 LLPHQ9BRT6 129 aaKnown RBP9.68□□□□□ -0.86
CPNE4-211ENST00000514439 PIH1D3Q9NQM4 214 aaKnown RBP9.68□□□□□ -0.86
CPNE4-211ENST00000514439 CICQ96RK0 1608 aaPredicted RBP9.68□□□□□ -0.86
CPNE4-211ENST00000514439 AKAP11Q9UKA4 1901 aa9.68□□□□□ -0.86
CPNE4-211ENST00000514439 NWD2Q9ULI1 1742 aa9.68□□□□□ -0.86
CPNE4-211ENST00000514439 ESPNB1AK53 854 aa9.68□□□□□ -0.86
CPNE4-211ENST00000514439 KCNQ2O43526 872 aa9.68□□□□□ -0.86
CPNE4-211ENST00000514439 TTF1Q15361 905 aaPredicted RBP9.68□□□□□ -0.86
CPNE4-211ENST00000514439 ZSCAN25Q6NSZ9 544 aa9.68□□□□□ -0.86
CPNE4-211ENST00000514439 NSUN7Q8NE18 718 aaKnown RBP9.68□□□□□ -0.86
CPNE4-211ENST00000514439 PDLIM2Q96JY6 352 aa9.68□□□□□ -0.86
CPNE4-211ENST00000514439 SEC31BQ9NQW1 1179 aa9.68□□□□□ -0.86
CPNE4-211ENST00000514439 ATRNO75882 1429 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms