RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 CCAR1Q8IX12 1150 aaKnown RBP11.25□□□□□ -0.61
VCAN-210ENST00000513960 MAP4K1Q92918 833 aa11.25□□□□□ -0.61
VCAN-210ENST00000513960 CLSTN2Q9H4D0 955 aa11.25□□□□□ -0.61
VCAN-210ENST00000513960 DNAI1Q9UI46 699 aa11.25□□□□□ -0.61
VCAN-210ENST00000513960 CYP27B1O15528 508 aa11.25□□□□□ -0.61
VCAN-210ENST00000513960 CEP57L1Q8IYX8 460 aa11.25□□□□□ -0.61
VCAN-210ENST00000513960 BRF1Q92994 677 aa11.25□□□□□ -0.61
VCAN-210ENST00000513960 KIF1AQ12756 1690 aa11.25□□□□□ -0.61
VCAN-210ENST00000513960 C11orf57Q6ZUT1 292 aaPredicted RBP11.25□□□□□ -0.61
VCAN-210ENST00000513960 DNAJC2Q99543 621 aaKnown RBP11.25□□□□□ -0.61
VCAN-210ENST00000513960 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.25□□□□□ -0.61
VCAN-210ENST00000513960 SFPQP23246 707 aaKnown RBP eCLIP11.24□□□□□ -0.61
VCAN-210ENST00000513960 ANKRD1Q15327 319 aa11.24□□□□□ -0.61
VCAN-210ENST00000513960 COPRSQ9NQ92 184 aa11.24□□□□□ -0.61
VCAN-210ENST00000513960 ADAMTSL3P82987 1691 aa11.24□□□□□ -0.61
VCAN-210ENST00000513960 A0A0D9SFI3 127 aa11.24□□□□□ -0.61
VCAN-210ENST00000513960 SLC27A2O14975 620 aa11.24□□□□□ -0.61
VCAN-210ENST00000513960 TPM4P67936 248 aa11.24□□□□□ -0.61
VCAN-210ENST00000513960 MORC2Q9Y6X9 1032 aaPredicted RBP11.24□□□□□ -0.61
VCAN-210ENST00000513960 STX1AQ16623 288 aa11.24□□□□□ -0.61
VCAN-210ENST00000513960 ZSWIM4Q9H7M6 989 aa11.24□□□□□ -0.61
VCAN-210ENST00000513960 MEGF6O75095 1541 aa11.23□□□□□ -0.61
VCAN-210ENST00000513960 TFCP2Q12800 502 aa11.23□□□□□ -0.61
VCAN-210ENST00000513960 GPS2Q13227 327 aa11.23□□□□□ -0.61
VCAN-210ENST00000513960 C10orf67Q8IYJ2 551 aa11.23□□□□□ -0.61
VCAN-210ENST00000513960 FSIP1Q8NA03 581 aa11.23□□□□□ -0.61
VCAN-210ENST00000513960 KCNB2Q92953 911 aa11.23□□□□□ -0.61
VCAN-210ENST00000513960 FTOQ9C0B1 505 aaKnown RBP eCLIP11.23□□□□□ -0.61
VCAN-210ENST00000513960 TRPM3Q9HCF6 1732 aaPredicted RBP11.23□□□□□ -0.61
VCAN-210ENST00000513960 TNNI3KQ59H18 835 aa11.23□□□□□ -0.61
VCAN-210ENST00000513960 PDILTQ8N807 584 aa11.23□□□□□ -0.61
VCAN-210ENST00000513960 FPGT-TNNI3KV9GXZ4 949 aa11.23□□□□□ -0.61
VCAN-210ENST00000513960 HNRNPH2P55795 449 aaKnown RBP11.23□□□□□ -0.61
VCAN-210ENST00000513960 PLBD2Q8NHP8 589 aa11.23□□□□□ -0.61
VCAN-210ENST00000513960 HMG20BQ9P0W2 317 aa11.23□□□□□ -0.61
VCAN-210ENST00000513960 RGPD5Q99666 1765 aa11.23□□□□□ -0.61
VCAN-210ENST00000513960 ATP5JP18859 108 aa11.22□□□□□ -0.61
VCAN-210ENST00000513960 CCT2P78371 535 aaKnown RBP11.22□□□□□ -0.61
VCAN-210ENST00000513960 PTPN12Q05209 780 aaKnown RBP11.22□□□□□ -0.61
VCAN-210ENST00000513960 PTPN21Q16825 1174 aa11.22□□□□□ -0.61
VCAN-210ENST00000513960 HSP90AA4PQ58FG1 418 aa11.22□□□□□ -0.61
VCAN-210ENST00000513960 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.22□□□□□ -0.61
VCAN-210ENST00000513960 TDRD7Q8NHU6 1098 aaKnown RBP11.22□□□□□ -0.61
VCAN-210ENST00000513960 NAT10Q9H0A0 1025 aaKnown RBP11.22□□□□□ -0.61
VCAN-210ENST00000513960 MST1RQ04912 1400 aa11.22□□□□□ -0.61
VCAN-210ENST00000513960 LMTK3Q96Q04 1460 aa11.22□□□□□ -0.61
VCAN-210ENST00000513960 SEC31AO94979 1220 aaKnown RBP11.22□□□□□ -0.61
VCAN-210ENST00000513960 PDIA4P13667 645 aaKnown RBP11.22□□□□□ -0.61
VCAN-210ENST00000513960 TOM1L2Q6ZVM7 507 aa11.22□□□□□ -0.61
VCAN-210ENST00000513960 EDC3Q96F86 508 aaKnown RBP11.22□□□□□ -0.61
VCAN-210ENST00000513960 LMBR1LQ6UX01 489 aa11.22□□□□□ -0.61
VCAN-210ENST00000513960 KRBA2Q6ZNG9 492 aa11.22□□□□□ -0.61
VCAN-210ENST00000513960 NEUROD6Q96NK8 337 aa11.22□□□□□ -0.61
VCAN-210ENST00000513960 PRDM11Q9NQV5 511 aa11.22□□□□□ -0.61
VCAN-210ENST00000513960 ANO10Q9NW15 660 aa11.22□□□□□ -0.61
VCAN-210ENST00000513960 DBNLQ9UJU6 430 aaKnown RBP11.22□□□□□ -0.61
VCAN-210ENST00000513960 CFAP45Q9UL16 551 aa11.22□□□□□ -0.61
VCAN-210ENST00000513960 NEMFO60524 1076 aa11.21□□□□□ -0.61
VCAN-210ENST00000513960 LMAN1P49257 510 aa11.21□□□□□ -0.61
VCAN-210ENST00000513960 KRT32Q14532 448 aa11.21□□□□□ -0.61
VCAN-210ENST00000513960 PLA2G4DQ86XP0 818 aa11.21□□□□□ -0.61
VCAN-210ENST00000513960 TCHHQ07283 1943 aa11.21□□□□□ -0.61
VCAN-210ENST00000513960 CAMTA1Q9Y6Y1 1673 aa11.21□□□□□ -0.61
VCAN-210ENST00000513960 IFNKQ9P0W0 207 aa11.21□□□□□ -0.61
VCAN-210ENST00000513960 TNS3Q68CZ2 1445 aa11.2□□□□□ -0.62
VCAN-210ENST00000513960 RPS6KB1P23443 525 aa11.2□□□□□ -0.62
VCAN-210ENST00000513960 SYCP1Q15431 976 aa11.2□□□□□ -0.62
VCAN-210ENST00000513960 ZNF589Q86UQ0 364 aaPredicted RBP11.2□□□□□ -0.62
VCAN-210ENST00000513960 STK11IPQ8N1F8 1099 aa11.2□□□□□ -0.62
VCAN-210ENST00000513960 ZCRB1Q8TBF4 217 aaKnown RBP11.2□□□□□ -0.62
VCAN-210ENST00000513960 DBNDD2Q9BQY9 259 aa11.2□□□□□ -0.62
VCAN-210ENST00000513960 EPC1Q9H2F5 836 aa11.2□□□□□ -0.62
VCAN-210ENST00000513960 SPATA31A3Q5VYP0 1347 aa11.2□□□□□ -0.62
VCAN-210ENST00000513960 SERPINC1P01008 464 aa11.2□□□□□ -0.62
VCAN-210ENST00000513960 LMOD1P29536 600 aaPredicted RBP11.2□□□□□ -0.62
VCAN-210ENST00000513960 CLCN6P51797 869 aa11.2□□□□□ -0.62
VCAN-210ENST00000513960 RABL6Q3YEC7 729 aaPredicted RBP11.2□□□□□ -0.62
VCAN-210ENST00000513960 IPO4Q8TEX9 1081 aaKnown RBP11.2□□□□□ -0.62
VCAN-210ENST00000513960 PGBD1Q96JS3 809 aa11.2□□□□□ -0.62
VCAN-210ENST00000513960 RBM6P78332 1123 aaKnown RBP11.2□□□□□ -0.62
VCAN-210ENST00000513960 TTLL5Q6EMB2 1281 aa11.2□□□□□ -0.62
VCAN-210ENST00000513960 CCDC191Q8NCU4 936 aa11.2□□□□□ -0.62
VCAN-210ENST00000513960 SNRKQ9NRH2 765 aa11.2□□□□□ -0.62
VCAN-210ENST00000513960 CWC25Q9NXE8 425 aaPredicted RBP11.2□□□□□ -0.62
VCAN-210ENST00000513960 NDUFB9Q9Y6M9 179 aa11.2□□□□□ -0.62
VCAN-210ENST00000513960 SIPA1L3O60292 1781 aaPredicted RBP11.2□□□□□ -0.62
VCAN-210ENST00000513960 TAF5LO75529 589 aa11.19□□□□□ -0.62
VCAN-210ENST00000513960 RFX5P48382 616 aaPredicted RBP11.19□□□□□ -0.62
VCAN-210ENST00000513960 GYS2P54840 703 aa11.19□□□□□ -0.62
VCAN-210ENST00000513960 STK38Q15208 465 aa11.19□□□□□ -0.62
VCAN-210ENST00000513960 LRP10Q7Z4F1 713 aa11.19□□□□□ -0.62
VCAN-210ENST00000513960 LRRN4CLQ8ND94 238 aa11.19□□□□□ -0.62
VCAN-210ENST00000513960 CARD6Q9BX69 1037 aa11.19□□□□□ -0.62
VCAN-210ENST00000513960 ZCCHC17Q9NP64 241 aaKnown RBP11.19□□□□□ -0.62
VCAN-210ENST00000513960 DDX46Q7L014 1031 aaKnown RBP11.19□□□□□ -0.62
VCAN-210ENST00000513960 U3KPZ7 1027 aaPredicted RBP11.19□□□□□ -0.62
VCAN-210ENST00000513960 MED23Q9ULK4 1368 aa11.19□□□□□ -0.62
VCAN-210ENST00000513960 KIF2AO00139 706 aaPredicted RBP11.19□□□□□ -0.62
VCAN-210ENST00000513960 RAB11FIP4Q86YS3 637 aa11.19□□□□□ -0.62
VCAN-210ENST00000513960 CRYBG1Q9Y4K1 1723 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms