RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 PNMA8AQ86V59 439 aaPredicted RBP9.9□□□□□ -0.82
LIMCH1-218ENST00000513024 AFAP1L1Q8TED9 768 aa9.9□□□□□ -0.82
LIMCH1-218ENST00000513024 AIDAQ96BJ3 306 aa9.9□□□□□ -0.82
LIMCH1-218ENST00000513024 FANCAO15360 1455 aa9.9□□□□□ -0.82
LIMCH1-218ENST00000513024 NKTRP30414 1462 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-218ENST00000513024 CHD1O14646 1710 aa9.9□□□□□ -0.82
LIMCH1-218ENST00000513024 POLR3DP05423 398 aaPredicted RBP9.9□□□□□ -0.82
LIMCH1-218ENST00000513024 RFX1P22670 979 aa9.9□□□□□ -0.82
LIMCH1-218ENST00000513024 WDR78Q5VTH9 848 aa9.9□□□□□ -0.82
LIMCH1-218ENST00000513024 BIN2Q9UBW5 565 aaPredicted RBP9.9□□□□□ -0.82
LIMCH1-218ENST00000513024 MACROD2A1Z1Q3 448 aa9.9□□□□□ -0.83
LIMCH1-218ENST00000513024 CEP104O60308 925 aa9.9□□□□□ -0.83
LIMCH1-218ENST00000513024 PPFIA2O75334 1257 aa9.9□□□□□ -0.83
LIMCH1-218ENST00000513024 RNF8O76064 485 aa9.9□□□□□ -0.83
LIMCH1-218ENST00000513024 CEP85LQ5SZL2 805 aa9.9□□□□□ -0.83
LIMCH1-218ENST00000513024 RUFY3Q7L099 469 aa9.9□□□□□ -0.83
LIMCH1-218ENST00000513024 KDM2BQ8NHM5 1336 aa9.9□□□□□ -0.83
LIMCH1-218ENST00000513024 TFCP2L1Q9NZI6 479 aa9.9□□□□□ -0.83
LIMCH1-218ENST00000513024 COL17A1Q9UMD9 1497 aaPredicted RBP9.9□□□□□ -0.83
LIMCH1-218ENST00000513024 ERCC3P19447 782 aa9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 USP5P45974 858 aa9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 LRRC43Q8N309 656 aa9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 CTNNBL1Q8WYA6 563 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 CCDC77Q9BR77 488 aa9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 LRP2BPQ9P2M1 347 aa9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 TPX2Q9ULW0 747 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 FAF1Q9UNN5 650 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 C8orf34Q49A92 452 aa9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 UTP14CQ5TAP6 766 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 PHLDB2Q86SQ0 1253 aa9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 ERO1AQ96HE7 468 aa9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 CCDC61Q9Y6R9 512 aa9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 ANO6Q4KMQ2 910 aa9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 PRR16Q569H4 304 aa9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 CNPY2Q9Y2B0 182 aa9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 IKBKGQ9Y6K9 419 aa9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 BLMP54132 1417 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 MGEA5O60502 916 aa9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 ALDH3A1P30838 453 aa9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 ALDH1L2Q3SY69 923 aa9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 CRACR2BQ8N4Y2 399 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 ABCF2Q9UG63 623 aa9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 SATB2Q9UPW6 733 aa9.89□□□□□ -0.83
LIMCH1-218ENST00000513024 B4DLN1 442 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 CIB2O75838 187 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 CEBPAP49715 358 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 MRPL12P52815 198 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 COG7P83436 770 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 TNIP1Q15025 636 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 DDB1Q16531 1140 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 KIAA0753Q2KHM9 967 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 INTS8Q75QN2 995 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 USP48Q86UV5 1035 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 RAB11FIP4Q86YS3 637 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 IQCGQ9H095 443 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 RRAGDQ9NQL2 400 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 BAIAP2L1Q9UHR4 511 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 POTEJP0CG39 1038 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 SLC8A1P32418 973 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 FAM160A1Q05DH4 1040 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 RASIP1Q5U651 963 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 OGFOD1Q8N543 542 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 FAM200AQ8TCP9 573 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 ADGBQ8N7X0 1667 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 LRRD1A4D1F6 860 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 BTBD11A6QL63 1104 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 MINDY4BA8MYZ0 360 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 NECAB1Q8N987 351 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 LRRC45Q96CN5 670 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 MRFAP1Q9Y605 127 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 CEP170Q5SW79 1584 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 A2MP01023 1474 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 GOLGA8BA8MQT2 603 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 SMIM24O75264 130 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 MYCNP04198 464 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 CAVIN4Q5BKX8 364 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 VCX3AQ9NNX9 186 aa9.88□□□□□ -0.83
LIMCH1-218ENST00000513024 LUC7L3O95232 432 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 MTIF2P46199 727 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 DMTNQ08495 405 aa9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 PRPF4BQ13523 1007 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 SELENOSQ9BQE4 189 aa9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 C19orf44Q9H6X5 657 aa9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 ABCC10Q5T3U5 1492 aa9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 TTC36A6NLP5 189 aa9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 GIGYF1O75420 1035 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 GMNNO75496 209 aa9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 ZSCAN22P10073 491 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 UBASH3AP57075 661 aa9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 TAF7Q15545 349 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 MAP7D1Q3KQU3 841 aa9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 UBA5Q9GZZ9 404 aa9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 ANKIB1Q9P2G1 1089 aa9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 PCDHB15Q9Y5E8 787 aa9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 FOXO3O43524 673 aa9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 CHMP2AO43633 222 aa9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 ZKSCAN8Q15776 578 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 RNF10Q8N5U6 811 aaKnown RBP9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms