RNA–Protein interactions for RNA: ENST00000510737.1

USP53-206, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 5

Gene USP53, Length 534 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-206ENST00000510737 FSCN2O14926 492 aa13.34□□□□□ -0.27
USP53-206ENST00000510737 DDX3YO15523 660 aaKnown RBP13.34□□□□□ -0.27
USP53-206ENST00000510737 ADAM11O75078 769 aa13.34□□□□□ -0.27
USP53-206ENST00000510737 PDGFAP04085 211 aa13.34□□□□□ -0.27
USP53-206ENST00000510737 FSTP19883 344 aa13.34□□□□□ -0.27
USP53-206ENST00000510737 MPSTP25325 297 aa13.34□□□□□ -0.27
USP53-206ENST00000510737 DNM1Q05193 864 aaKnown RBP13.34□□□□□ -0.27
USP53-206ENST00000510737 MTMR3Q13615 1198 aa13.34□□□□□ -0.27
USP53-206ENST00000510737 XKR5Q6UX68 686 aa13.34□□□□□ -0.27
USP53-206ENST00000510737 ADAM19Q9H013 955 aa13.34□□□□□ -0.27
USP53-206ENST00000510737 TRPA1O75762 1119 aa13.33□□□□□ -0.28
USP53-206ENST00000510737 GTF3C2Q8WUA4 911 aaPredicted RBP13.33□□□□□ -0.28
USP53-206ENST00000510737 FOXD4L4Q8WXT5 416 aaPredicted RBP13.33□□□□□ -0.28
USP53-206ENST00000510737 HHIPQ96QV1 700 aa13.33□□□□□ -0.28
USP53-206ENST00000510737 CHRDQ9H2X0 955 aa13.33□□□□□ -0.28
USP53-206ENST00000510737 SSFA2P28290 1259 aa13.32□□□□□ -0.28
USP53-206ENST00000510737 EIF1AXP47813 144 aaKnown RBP13.32□□□□□ -0.28
USP53-206ENST00000510737 KIAA1211Q6ZU35 1233 aa13.32□□□□□ -0.28
USP53-206ENST00000510737 ACAD11Q709F0 780 aa13.32□□□□□ -0.28
USP53-206ENST00000510737 ARMC10Q8N2F6 343 aa13.32□□□□□ -0.28
USP53-206ENST00000510737 CCDC82Q8N4S0 544 aa13.32□□□□□ -0.28
USP53-206ENST00000510737 DCAF11Q8TEB1 546 aa13.32□□□□□ -0.28
USP53-206ENST00000510737 KRTAP9-2Q9BYQ4 174 aa13.32□□□□□ -0.28
USP53-206ENST00000510737 C1orf115Q9H7X2 142 aa13.32□□□□□ -0.28
USP53-206ENST00000510737 KRTAP9-1A8MXZ3 250 aaPredicted RBP13.31□□□□□ -0.28
USP53-206ENST00000510737 NOM1Q5C9Z4 860 aaKnown RBP13.31□□□□□ -0.28
USP53-206ENST00000510737 KLHDC7BQ96G42 594 aa13.31□□□□□ -0.28
USP53-206ENST00000510737 NBPF11Q86T75 865 aa13.3□□□□□ -0.28
USP53-206ENST00000510737 UBASH3BQ8TF42 649 aa13.3□□□□□ -0.28
USP53-206ENST00000510737 UNC13AQ9UPW8 1703 aa13.3□□□□□ -0.28
USP53-206ENST00000510737 CARNS1A5YM72 827 aa13.29□□□□□ -0.28
USP53-206ENST00000510737 PTPRAP18433 802 aa13.29□□□□□ -0.28
USP53-206ENST00000510737 DZANK1Q9NVP4 752 aa13.29□□□□□ -0.28
USP53-206ENST00000510737 NACADO15069 1562 aa13.28□□□□□ -0.28
USP53-206ENST00000510737 CES1P23141 567 aa13.28□□□□□ -0.28
USP53-206ENST00000510737 PHLDB3Q6NSJ2 640 aa13.28□□□□□ -0.28
USP53-206ENST00000510737 MZF1P28698 734 aaPredicted RBP13.27□□□□□ -0.29
USP53-206ENST00000510737 C8orf34Q49A92 452 aa13.27□□□□□ -0.29
USP53-206ENST00000510737 KLHL23Q8NBE8 558 aa13.27□□□□□ -0.29
USP53-206ENST00000510737 POLIQ9UNA4 740 aa13.27□□□□□ -0.29
USP53-206ENST00000510737 RAXQ9Y2V3 346 aa13.27□□□□□ -0.29
USP53-206ENST00000510737 BICRAQ9NZM4 1560 aa13.27□□□□□ -0.29
USP53-206ENST00000510737 HGSNATQ68CP4 663 aa13.26□□□□□ -0.29
USP53-206ENST00000510737 DUOXA2Q1HG44 320 aa13.25□□□□□ -0.29
USP53-206ENST00000510737 FAM46AQ96IP4 442 aaKnown RBP13.25□□□□□ -0.29
USP53-206ENST00000510737 SEC31BQ9NQW1 1179 aa13.25□□□□□ -0.29
USP53-206ENST00000510737 KRTAP9-6A0A140TA67 174 aa13.24□□□□□ -0.29
USP53-206ENST00000510737 H3BRJ5 948 aa13.24□□□□□ -0.29
USP53-206ENST00000510737 RPLP1P05386 114 aaKnown RBP13.24□□□□□ -0.29
USP53-206ENST00000510737 GTF3C3Q9Y5Q9 886 aa13.24□□□□□ -0.29
USP53-206ENST00000510737 PDE2AO00408 941 aaPredicted RBP13.23□□□□□ -0.29
USP53-206ENST00000510737 NPR3P17342 541 aa13.23□□□□□ -0.29
USP53-206ENST00000510737 FAM117BQ6P1L5 589 aa13.23□□□□□ -0.29
USP53-206ENST00000510737 EREGO14944 169 aa13.22□□□□□ -0.29
USP53-206ENST00000510737 MED26O95402 600 aa13.22□□□□□ -0.29
USP53-206ENST00000510737 STOML1Q9UBI4 398 aa13.22□□□□□ -0.29
USP53-206ENST00000510737 SOX13Q9UN79 622 aa13.22□□□□□ -0.29
USP53-206ENST00000510737 SSTR4P31391 388 aa13.21□□□□□ -0.29
USP53-206ENST00000510737 SLC51AQ86UW1 340 aa13.21□□□□□ -0.29
USP53-206ENST00000510737 CECR2Q9BXF3 1484 aa13.21□□□□□ -0.3
USP53-206ENST00000510737 IGLV1-40P01703 118 aa13.2□□□□□ -0.3
USP53-206ENST00000510737 PCSK2P16519 638 aa13.2□□□□□ -0.3
USP53-206ENST00000510737 PIP4K2BP78356 416 aa13.2□□□□□ -0.3
USP53-206ENST00000510737 ZKSCAN3Q9BRR0 538 aa13.2□□□□□ -0.3
USP53-206ENST00000510737 CEP41Q9BYV8 373 aa13.2□□□□□ -0.3
USP53-206ENST00000510737 FOXD3Q9UJU5 478 aaPredicted RBP13.2□□□□□ -0.3
USP53-206ENST00000510737 DHX15O43143 795 aaKnown RBP13.19□□□□□ -0.3
USP53-206ENST00000510737 FZD6O60353 706 aa13.19□□□□□ -0.3
USP53-206ENST00000510737 TNFRSF21O75509 655 aa13.19□□□□□ -0.3
USP53-206ENST00000510737 CD97P48960 835 aa13.19□□□□□ -0.3
USP53-206ENST00000510737 NLRP12P59046 1061 aa13.19□□□□□ -0.3
USP53-206ENST00000510737 TMEM102Q8N9M5 508 aaPredicted RBP13.19□□□□□ -0.3
USP53-206ENST00000510737 UTP4Q969X6 686 aaKnown RBP13.19□□□□□ -0.3
USP53-206ENST00000510737 TRIM42Q8IWZ5 723 aa13.18□□□□□ -0.3
USP53-206ENST00000510737 SLC7A3Q8WY07 619 aa13.18□□□□□ -0.3
USP53-206ENST00000510737 WNT8BQ93098 351 aa13.18□□□□□ -0.3
USP53-206ENST00000510737 NXPE3Q969Y0 559 aa13.18□□□□□ -0.3
USP53-206ENST00000510737 OSMRQ99650 979 aa13.18□□□□□ -0.3
USP53-206ENST00000510737 C7orf69Q9H7B7 122 aa13.18□□□□□ -0.3
USP53-206ENST00000510737 PPP1R15AO75807 674 aaPredicted RBP13.17□□□□□ -0.3
USP53-206ENST00000510737 TGFB1P01137 390 aa13.17□□□□□ -0.3
USP53-206ENST00000510737 VN1R5Q7Z5H4 357 aa13.17□□□□□ -0.3
USP53-206ENST00000510737 MYRFLQ96LU7 910 aa13.17□□□□□ -0.3
USP53-206ENST00000510737 OSGEPQ9NPF4 335 aa13.17□□□□□ -0.3
USP53-206ENST00000510737 HMX2A2RU54 273 aa13.16□□□□□ -0.3
USP53-206ENST00000510737 PREPP48147 710 aa13.16□□□□□ -0.3
USP53-206ENST00000510737 CABP4P57796 275 aa13.16□□□□□ -0.3
USP53-206ENST00000510737 UVSSAQ2YD98 709 aa13.16□□□□□ -0.3
USP53-206ENST00000510737 ALKBH2Q6NS38 261 aa13.16□□□□□ -0.3
USP53-206ENST00000510737 ZDHHC13Q8IUH4 622 aa13.16□□□□□ -0.3
USP53-206ENST00000510737 LATS2Q9NRM7 1088 aa13.16□□□□□ -0.3
USP53-206ENST00000510737 CCDC87Q9NVE4 849 aa13.16□□□□□ -0.3
USP53-206ENST00000510737 CC2D2AQ9P2K1 1620 aa13.16□□□□□ -0.3
USP53-206ENST00000510737 PMEPA1Q969W9 287 aa13.15□□□□□ -0.3
USP53-206ENST00000510737 ANO2Q9NQ90 1003 aa13.15□□□□□ -0.3
USP53-206ENST00000510737 PCMTD2Q9NV79 361 aa13.15□□□□□ -0.3
USP53-206ENST00000510737 FAM177BA6PVY3 158 aa13.14□□□□□ -0.31
USP53-206ENST00000510737 SOX1O00570 391 aaPredicted RBP13.14□□□□□ -0.31
USP53-206ENST00000510737 PEAR1Q5VY43 1037 aaPredicted RBP13.14□□□□□ -0.31
USP53-206ENST00000510737 PHACTR2O75167 634 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms