RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 GOLGA8QA0A0J9YX86 632 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 GOLGA8OA6NCC3 632 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 GOLGA8AA7E2F4 631 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 GOLGA8NF8WBI6 632 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 CETN3O15182 167 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 MRPS25P82663 173 aaKnown RBP4.07□□□□□ -1.76
USP53-205ENST00000509769 PDE3AQ14432 1141 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 PPP1R21Q6ZMI0 780 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 BTN2A1Q7KYR7 527 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 CCDC25Q86WR0 208 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 TMEM57Q8N5G2 664 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 CCDC63Q8NA47 563 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 ZNF784Q8NCA9 323 aaPredicted RBP4.07□□□□□ -1.76
USP53-205ENST00000509769 OLFM3Q96PB7 478 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 FERMT1Q9BQL6 677 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 UPF3BQ9BZI7 483 aaKnown RBP4.07□□□□□ -1.76
USP53-205ENST00000509769 DNAJC25Q9H1X3 360 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 CHCHD3Q9NX63 227 aaKnown RBP4.07□□□□□ -1.76
USP53-205ENST00000509769 HDAC9Q9UKV0 1011 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 PIK3R4Q99570 1358 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 CDKL5O76039 1030 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 YEATS4O95619 227 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 HSPA6P17066 643 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 RWDD2BP57060 319 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 ZBTB16Q05516 673 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 CCDC80Q76M96 950 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 MCF2L2Q86YR7 1114 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 NME8Q8N427 588 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 TMCO5AQ8N6Q1 288 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 MYRIPQ8NFW9 859 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 WASF1Q92558 559 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 ATP2A3Q93084 1043 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 HAUS1Q96CS2 278 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 RRP36Q96EU6 259 aaKnown RBP4.07□□□□□ -1.76
USP53-205ENST00000509769 OSBPL9Q96SU4 736 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 CENPKQ9BS16 269 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 MED4Q9NPJ6 270 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 HYPKQ9NX55 129 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 FMN1Q68DA7 1419 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 WASHC2AQ641Q2 1341 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 ITSN2Q9NZM3 1697 aa4.07□□□□□ -1.76
USP53-205ENST00000509769 STK3Q13188 491 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 MTMR3Q13615 1198 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 PRR16Q569H4 304 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 KANK3Q6NY19 840 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 MMRN2Q9H8L6 949 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 TEKT2Q9UIF3 430 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 ABCA6Q8N139 1617 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 PRDM15P57071 1507 aaPredicted RBP4.06□□□□□ -1.76
USP53-205ENST00000509769 KCNQ2O43526 872 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 HIP1RO75146 1068 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 PCYT1AP49585 367 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 SPAG1Q07617 926 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 UBE4AQ14139 1066 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 BRD3Q15059 726 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 SNCBQ16143 134 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 RAB11FIP4Q86YS3 637 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 IFT81Q8WYA0 676 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 RAPGEF4Q8WZA2 1011 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 KIFAP3Q92845 792 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 THOC1Q96FV9 657 aaKnown RBP4.06□□□□□ -1.76
USP53-205ENST00000509769 DRC1Q96MC2 740 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 PUS7Q96PZ0 661 aaKnown RBP4.06□□□□□ -1.76
USP53-205ENST00000509769 MOV10L1Q9BXT6 1211 aaKnown RBP4.06□□□□□ -1.76
USP53-205ENST00000509769 SDAD1Q9NVU7 687 aaKnown RBP eCLIP4.06□□□□□ -1.76
USP53-205ENST00000509769 CTTNBP2NLQ9P2B4 639 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 ERICH2A1L162 156 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 MAN1A2O60476 641 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 ESRRBO95718 433 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 STX3Q13277 289 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 KRT32Q14532 448 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 FYB2Q5VWT5 728 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 KIF6Q6ZMV9 814 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 INTS8Q75QN2 995 aaKnown RBP4.06□□□□□ -1.76
USP53-205ENST00000509769 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.06□□□□□ -1.767e-6■□□□□ 11.3
USP53-205ENST00000509769 LMBR1Q8WVP7 490 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 OPTNQ96CV9 577 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 CCDC43Q96MW1 224 aaKnown RBP4.06□□□□□ -1.76
USP53-205ENST00000509769 KIF2CQ99661 725 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 KIFC3Q9BVG8 833 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 SELENOOQ9BVL4 669 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 NUF2Q9BZD4 464 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 TRIM6Q9C030 488 aaPredicted RBP4.06□□□□□ -1.76
USP53-205ENST00000509769 SRCIN1Q9C0H9 1055 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 C19orf44Q9H6X5 657 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 C10orf88Q9H8K7 445 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.06□□□□□ -1.76
USP53-205ENST00000509769 ATRNO75882 1429 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 ATP2A1O14983 1001 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 C4BPBP20851 252 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 CCT6AP40227 531 aaKnown RBP4.06□□□□□ -1.76
USP53-205ENST00000509769 KRR1Q13601 381 aaKnown RBP4.06□□□□□ -1.76
USP53-205ENST00000509769 PDXDC1Q6P996 788 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 KRBA2Q6ZNG9 492 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 MMS22LQ6ZRQ5 1243 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 PIBF1Q8WXW3 757 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 ZNF428Q96B54 188 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 ANKRD27Q96NW4 1050 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 TSGA10Q9BZW7 698 aa4.06□□□□□ -1.76
USP53-205ENST00000509769 KIAA1107Q9UPP5 1409 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms