RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 RSRP1Q9BUV0 290 aa6.19□□□□□ -1.42
USP53-204ENST00000507906 NOC4LQ9BVI4 516 aaKnown RBP6.19□□□□□ -1.42
USP53-204ENST00000507906 DZANK1Q9NVP4 752 aa6.19□□□□□ -1.42
USP53-204ENST00000507906 AKAP2Q9Y2D5 859 aa6.19□□□□□ -1.42
USP53-204ENST00000507906 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.19□□□□□ -1.42
USP53-204ENST00000507906 CADPSQ9ULU8 1353 aa6.18□□□□□ -1.42
USP53-204ENST00000507906 CELA3AP09093 270 aa6.18□□□□□ -1.42
USP53-204ENST00000507906 MLLT1Q03111 559 aaPredicted RBP6.18□□□□□ -1.42
USP53-204ENST00000507906 GNL2Q13823 731 aaKnown RBP6.18□□□□□ -1.42
USP53-204ENST00000507906 CCDC85BQ15834 202 aaPredicted RBP6.18□□□□□ -1.42
USP53-204ENST00000507906 BHMTQ93088 406 aa6.18□□□□□ -1.42
USP53-204ENST00000507906 GPRASP2Q96D09 838 aa6.18□□□□□ -1.42
USP53-204ENST00000507906 EAF1Q96JC9 268 aaPredicted RBP6.18□□□□□ -1.42
USP53-204ENST00000507906 NSUN5Q96P11 429 aaKnown RBP6.18□□□□□ -1.42
USP53-204ENST00000507906 PIF1Q9H611 641 aa6.18□□□□□ -1.42
USP53-204ENST00000507906 TLR6Q9Y2C9 796 aa6.18□□□□□ -1.42
USP53-204ENST00000507906 PHF20L1A8MW92 1017 aa6.17□□□□□ -1.42
USP53-204ENST00000507906 J3QW42 95 aa6.17□□□□□ -1.42
USP53-204ENST00000507906 PAGE1O75459 146 aa6.17□□□□□ -1.42
USP53-204ENST00000507906 MAP3K6O95382 1288 aa6.17□□□□□ -1.42
USP53-204ENST00000507906 GARTP22102 1010 aa6.17□□□□□ -1.42
USP53-204ENST00000507906 CTBSQ01459 385 aa6.17□□□□□ -1.42
USP53-204ENST00000507906 FAAP100Q0VG06 881 aa6.17□□□□□ -1.42
USP53-204ENST00000507906 LBRQ14739 615 aaKnown RBP6.17□□□□□ -1.42
USP53-204ENST00000507906 RASIP1Q5U651 963 aa6.17□□□□□ -1.42
USP53-204ENST00000507906 FIGNL1Q6PIW4 674 aa6.17□□□□□ -1.42
USP53-204ENST00000507906 TPTE2Q6XPS3 522 aa6.17□□□□□ -1.42
USP53-204ENST00000507906 HFE2Q6ZVN8 426 aa6.17□□□□□ -1.42
USP53-204ENST00000507906 NCAPG2Q86XI2 1143 aa6.17□□□□□ -1.42
USP53-204ENST00000507906 TRIM22Q8IYM9 498 aa6.17□□□□□ -1.42
USP53-204ENST00000507906 NXPE3Q969Y0 559 aa6.17□□□□□ -1.42
USP53-204ENST00000507906 GTPBP3Q969Y2 492 aaKnown RBP6.17□□□□□ -1.42
USP53-204ENST00000507906 SPATA32Q96LK8 384 aa6.17□□□□□ -1.42
USP53-204ENST00000507906 TMEM74Q96NL1 305 aa6.17□□□□□ -1.42
USP53-204ENST00000507906 MARK1Q9P0L2 795 aa6.17□□□□□ -1.42
USP53-204ENST00000507906 TRAK1Q9UPV9 953 aa6.17□□□□□ -1.42
USP53-204ENST00000507906 PSAPP07602 524 aa6.16□□□□□ -1.42
USP53-204ENST00000507906 HOXD8P13378 290 aaPredicted RBP6.16□□□□□ -1.42
USP53-204ENST00000507906 GBP2P32456 591 aaPredicted RBP6.16□□□□□ -1.42
USP53-204ENST00000507906 ATP11AP98196 1134 aa6.16□□□□□ -1.42
USP53-204ENST00000507906 HYAL2Q12891 473 aa6.16□□□□□ -1.42
USP53-204ENST00000507906 LAMC2Q13753 1193 aa6.16□□□□□ -1.42
USP53-204ENST00000507906 FBXL19Q6PCT2 694 aa6.16□□□□□ -1.42
USP53-204ENST00000507906 DTHD1Q6ZMT9 781 aa6.16□□□□□ -1.42
USP53-204ENST00000507906 DHX32Q7L7V1 743 aaKnown RBP6.16□□□□□ -1.42
USP53-204ENST00000507906 PHC3Q8NDX5 983 aa6.16□□□□□ -1.42
USP53-204ENST00000507906 PMFBP1Q8TBY8 1022 aa6.16□□□□□ -1.42
USP53-204ENST00000507906 RASGRP4Q8TDF6 673 aa6.16□□□□□ -1.42
USP53-204ENST00000507906 ANKRD24Q8TF21 1146 aa6.16□□□□□ -1.42
USP53-204ENST00000507906 ZNF296Q8WUU4 475 aaPredicted RBP6.16□□□□□ -1.42
USP53-204ENST00000507906 ZNF837Q96EG3 531 aaPredicted RBP6.16□□□□□ -1.42
USP53-204ENST00000507906 RHOVQ96L33 236 aa6.16□□□□□ -1.42
USP53-204ENST00000507906 SPON2Q9BUD6 331 aa6.16□□□□□ -1.42
USP53-204ENST00000507906 C2CD2LO14523 706 aa6.15□□□□□ -1.42
USP53-204ENST00000507906 ENC1O14682 589 aa6.15□□□□□ -1.42
USP53-204ENST00000507906 SOX18P35713 384 aa6.15□□□□□ -1.42
USP53-204ENST00000507906 EIF4A3P38919 411 aaKnown RBP6.15□□□□□ -1.42
USP53-204ENST00000507906 FAM160A1Q05DH4 1040 aa6.15□□□□□ -1.42
USP53-204ENST00000507906 KIAA0825Q8IV33 1275 aa6.15□□□□□ -1.42
USP53-204ENST00000507906 ARMC5Q96C12 935 aa6.15□□□□□ -1.42
USP53-204ENST00000507906 PNMA5Q96PV4 448 aa6.15□□□□□ -1.42
USP53-204ENST00000507906 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.15□□□□□ -1.42
USP53-204ENST00000507906 RASSF4Q9H2L5 321 aa6.15□□□□□ -1.42
USP53-204ENST00000507906 SEC31BQ9NQW1 1179 aa6.15□□□□□ -1.42
USP53-204ENST00000507906 GINM1Q9NU53 330 aa6.15□□□□□ -1.42
USP53-204ENST00000507906 PPP4R2Q9NY27 417 aa6.15□□□□□ -1.42
USP53-204ENST00000507906 GPR25O00155 361 aa6.14□□□□□ -1.43
USP53-204ENST00000507906 GREM1O60565 184 aa6.14□□□□□ -1.43
USP53-204ENST00000507906 PF4P02776 101 aa6.14□□□□□ -1.43
USP53-204ENST00000507906 ITPKAP23677 461 aa6.14□□□□□ -1.43
USP53-204ENST00000507906 CRKP46108 304 aa6.14□□□□□ -1.43
USP53-204ENST00000507906 PLAURQ03405 335 aa6.14□□□□□ -1.43
USP53-204ENST00000507906 KANK3Q6NY19 840 aa6.14□□□□□ -1.43
USP53-204ENST00000507906 SV2BQ7L1I2 683 aa6.14□□□□□ -1.43
USP53-204ENST00000507906 RELL1Q8IUW5 271 aa6.14□□□□□ -1.43
USP53-204ENST00000507906 BHLHE41Q9C0J9 482 aaPredicted RBP6.14□□□□□ -1.43
USP53-204ENST00000507906 KCNQ5Q9NR82 932 aa6.14□□□□□ -1.43
USP53-204ENST00000507906 PPM1HQ9ULR3 514 aa6.14□□□□□ -1.43
USP53-204ENST00000507906 EFR3BQ9Y2G0 817 aa6.14□□□□□ -1.43
USP53-204ENST00000507906 A0A096LPE4 126 aa6.13□□□□□ -1.43
USP53-204ENST00000507906 LOC102724428A0A0B4J2F2 783 aa6.13□□□□□ -1.43
USP53-204ENST00000507906 A0A1W2PPZ6 126 aa6.13□□□□□ -1.43
USP53-204ENST00000507906 XRCC5P13010 732 aaKnown RBP6.13□□□□□ -1.43
USP53-204ENST00000507906 TFE3P19532 575 aaPredicted RBP6.13□□□□□ -1.43
USP53-204ENST00000507906 ITGA6P23229 1130 aa6.13□□□□□ -1.43
USP53-204ENST00000507906 LIG3P49916 1009 aa6.13□□□□□ -1.43
USP53-204ENST00000507906 ZNF157P51786 506 aaPredicted RBP6.13□□□□□ -1.43
USP53-204ENST00000507906 SIK1P57059 783 aa6.13□□□□□ -1.43
USP53-204ENST00000507906 VPS37DQ86XT2 251 aa6.13□□□□□ -1.43
USP53-204ENST00000507906 TMEM102Q8N9M5 508 aaPredicted RBP6.13□□□□□ -1.43
USP53-204ENST00000507906 TRPM4Q8TD43 1214 aa6.13□□□□□ -1.43
USP53-204ENST00000507906 NECAB3Q96P71 396 aaPredicted RBP6.13□□□□□ -1.43
USP53-204ENST00000507906 PUS7Q96PZ0 661 aaKnown RBP6.13□□□□□ -1.43
USP53-204ENST00000507906 POP1Q99575 1024 aaKnown RBP6.13□□□□□ -1.43
USP53-204ENST00000507906 MUC3BQ9H195 1237 aa6.13□□□□□ -1.43
USP53-204ENST00000507906 IGFLR1Q9H665 355 aa6.13□□□□□ -1.43
USP53-204ENST00000507906 UBP1Q9NZI7 540 aa6.13□□□□□ -1.43
USP53-204ENST00000507906 KLF15Q9UIH9 416 aa6.13□□□□□ -1.43
USP53-204ENST00000507906 FAM181BA6NEQ2 426 aa6.12□□□□□ -1.43
USP53-204ENST00000507906 H7C1W4 665 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms