RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 CASP8AP2Q9UKL3 1982 aa26.88■■□□□ 1.89
SQSTM1-210ENST00000506042 RGS19P49795 217 aa26.87■■□□□ 1.89
SQSTM1-210ENST00000506042 CCT4P50991 539 aaKnown RBP26.87■■□□□ 1.89
SQSTM1-210ENST00000506042 IL16Q14005 1332 aa26.87■■□□□ 1.89
SQSTM1-210ENST00000506042 TTLL12Q14166 644 aaPredicted RBP26.86■■□□□ 1.89
SQSTM1-210ENST00000506042 STRIP1Q5VSL9 837 aa26.86■■□□□ 1.89
SQSTM1-210ENST00000506042 JARID2Q92833 1246 aaPredicted RBP26.86■■□□□ 1.89
SQSTM1-210ENST00000506042 MINPP1Q9UNW1 487 aa26.86■■□□□ 1.89
SQSTM1-210ENST00000506042 COL4A1P02462 1669 aa26.85■■□□□ 1.89
SQSTM1-210ENST00000506042 NEURL1BA8MQ27 555 aa26.85■■□□□ 1.89
SQSTM1-210ENST00000506042 TRPA1O75762 1119 aa26.85■■□□□ 1.89
SQSTM1-210ENST00000506042 SLC4A2P04920 1241 aa26.85■■□□□ 1.89
SQSTM1-210ENST00000506042 UBE3BQ7Z3V4 1068 aa26.85■■□□□ 1.89
SQSTM1-210ENST00000506042 GREM2Q9H772 168 aa26.85■■□□□ 1.89
SQSTM1-210ENST00000506042 NCBP3Q53F19 620 aaKnown RBP26.84■■□□□ 1.89
SQSTM1-210ENST00000506042 GMLQ99445 158 aa26.84■■□□□ 1.89
SQSTM1-210ENST00000506042 IGKV5-2P06315 115 aa26.83■■□□□ 1.89
SQSTM1-210ENST00000506042 FKBP5Q13451 457 aaPredicted RBP26.83■■□□□ 1.89
SQSTM1-210ENST00000506042 TSR2Q969E8 191 aaKnown RBP26.83■■□□□ 1.89
SQSTM1-210ENST00000506042 RNF186Q9NXI6 227 aa26.83■■□□□ 1.89
SQSTM1-210ENST00000506042 SPEF2Q9C093 1822 aa26.83■■□□□ 1.89
SQSTM1-210ENST00000506042 DLK2Q6UY11 383 aa26.82■■□□□ 1.88
SQSTM1-210ENST00000506042 APOBEC3FQ8IUX4 373 aaKnown RBP26.82■■□□□ 1.88
SQSTM1-210ENST00000506042 TSPYL6Q8N831 410 aa26.82■■□□□ 1.88
SQSTM1-210ENST00000506042 CACNA1FO60840 1977 aa26.81■■□□□ 1.88
SQSTM1-210ENST00000506042 CWF19L2Q2TBE0 894 aaKnown RBP26.81■■□□□ 1.88
SQSTM1-210ENST00000506042 WWC1Q8IX03 1113 aa26.81■■□□□ 1.88
SQSTM1-210ENST00000506042 ZIC5Q96T25 663 aa26.81■■□□□ 1.88
SQSTM1-210ENST00000506042 PLA2G12BQ9BX93 195 aa26.81■■□□□ 1.88
SQSTM1-210ENST00000506042 ZNF804BA4D1E1 1349 aa26.81■■□□□ 1.88
SQSTM1-210ENST00000506042 H7C1W4 665 aa26.8■■□□□ 1.88
SQSTM1-210ENST00000506042 ARMC9Q7Z3E5 817 aa26.8■■□□□ 1.88
SQSTM1-210ENST00000506042 RASAL3Q86YV0 1011 aa26.8■■□□□ 1.88
SQSTM1-210ENST00000506042 CSRNP1Q96S65 589 aa26.8■■□□□ 1.88
SQSTM1-210ENST00000506042 ITGA6P23229 1130 aa26.79■■□□□ 1.88
SQSTM1-210ENST00000506042 SREBF2Q12772 1141 aa26.79■■□□□ 1.88
SQSTM1-210ENST00000506042 FLIIQ13045 1269 aa26.79■■□□□ 1.88
SQSTM1-210ENST00000506042 GCKRQ14397 625 aa26.79■■□□□ 1.88
SQSTM1-210ENST00000506042 DACT2Q5SW24 774 aa26.79■■□□□ 1.88
SQSTM1-210ENST00000506042 TTLL5Q6EMB2 1281 aa26.79■■□□□ 1.88
SQSTM1-210ENST00000506042 LINS1Q8NG48 757 aa26.79■■□□□ 1.88
SQSTM1-210ENST00000506042 DNAAF4Q8WXU2 420 aa26.79■■□□□ 1.88
SQSTM1-210ENST00000506042 ASTN2O75129 1339 aaPredicted RBP26.79■■□□□ 1.88
SQSTM1-210ENST00000506042 ANKRD18BA2A2Z9 1011 aa26.78■■□□□ 1.88
SQSTM1-210ENST00000506042 PKN2Q16513 984 aaKnown RBP26.78■■□□□ 1.88
SQSTM1-210ENST00000506042 CTU1Q7Z7A3 348 aaKnown RBP26.78■■□□□ 1.88
SQSTM1-210ENST00000506042 MYO1BO43795 1136 aa26.76■■□□□ 1.87
SQSTM1-210ENST00000506042 COL1A1P02452 1464 aaPredicted RBP26.75■■□□□ 1.87
SQSTM1-210ENST00000506042 WNT10BO00744 389 aa26.75■■□□□ 1.87
SQSTM1-210ENST00000506042 IFIT5Q13325 482 aaKnown RBP26.75■■□□□ 1.87
SQSTM1-210ENST00000506042 NBPF9Q3BBW0 867 aa26.75■■□□□ 1.87
SQSTM1-210ENST00000506042 ZNF804AQ7Z570 1209 aa26.74■■□□□ 1.87
SQSTM1-210ENST00000506042 TAF7LQ5H9L4 462 aa26.73■■□□□ 1.87
SQSTM1-210ENST00000506042 WDR63Q8IWG1 891 aa26.73■■□□□ 1.87
SQSTM1-210ENST00000506042 CHMP3Q9Y3E7 222 aa26.73■■□□□ 1.87
SQSTM1-210ENST00000506042 GTF2IP78347 998 aa26.72■■□□□ 1.87
SQSTM1-210ENST00000506042 DLGAP5Q15398 846 aa26.72■■□□□ 1.87
SQSTM1-210ENST00000506042 UBE2Q2LH0YL09 131 aa26.71■■□□□ 1.87
SQSTM1-210ENST00000506042 ALDH1A1P00352 501 aa26.71■■□□□ 1.87
SQSTM1-210ENST00000506042 CSF1RP07333 972 aa26.71■■□□□ 1.87
SQSTM1-210ENST00000506042 KIAA0825Q8IV33 1275 aa26.71■■□□□ 1.87
SQSTM1-210ENST00000506042 MRS2Q9HD23 443 aa26.71■■□□□ 1.87
SQSTM1-210ENST00000506042 PPP2R3BQ9Y5P8 575 aa26.71■■□□□ 1.87
SQSTM1-210ENST00000506042 ANP32CO43423 234 aa26.7■■□□□ 1.86
SQSTM1-210ENST00000506042 CHRNDQ07001 517 aa26.7■■□□□ 1.86
SQSTM1-210ENST00000506042 G2E3Q7L622 706 aa26.7■■□□□ 1.86
SQSTM1-210ENST00000506042 PPP1R12BO60237 982 aaPredicted RBP26.69■■□□□ 1.86
SQSTM1-210ENST00000506042 SASH1O94885 1247 aa26.69■■□□□ 1.86
SQSTM1-210ENST00000506042 CCDC57Q2TAC2 916 aa26.69■■□□□ 1.86
SQSTM1-210ENST00000506042 NOM1Q5C9Z4 860 aaKnown RBP26.69■■□□□ 1.86
SQSTM1-210ENST00000506042 FANCIQ9NVI1 1328 aa26.68■■□□□ 1.86
SQSTM1-210ENST00000506042 INHBEP58166 350 aa26.68■■□□□ 1.86
SQSTM1-210ENST00000506042 CD209Q9NNX6 404 aa26.68■■□□□ 1.86
SQSTM1-210ENST00000506042 TM4SF4P48230 202 aa26.67■■□□□ 1.86
SQSTM1-210ENST00000506042 UNCXA6NJT0 531 aa26.66■■□□□ 1.86
SQSTM1-210ENST00000506042 SUPT20HL1Q3ZLR7 823 aa26.66■■□□□ 1.86
SQSTM1-210ENST00000506042 C15orf52Q6ZUT6 534 aaKnown RBP26.66■■□□□ 1.86
SQSTM1-210ENST00000506042 MXD3Q9BW11 206 aa26.66■■□□□ 1.86
SQSTM1-210ENST00000506042 FKBP1AP62942 108 aaKnown RBP26.65■■□□□ 1.86
SQSTM1-210ENST00000506042 PRAMEF18Q5VWM3 479 aa26.65■■□□□ 1.86
SQSTM1-210ENST00000506042 TXNRD3Q86VQ6 643 aa26.65■■□□□ 1.86
SQSTM1-210ENST00000506042 CNNM1Q9NRU3 951 aa26.65■■□□□ 1.86
SQSTM1-210ENST00000506042 C9orf78Q9NZ63 289 aaPredicted RBP26.65■■□□□ 1.86
SQSTM1-210ENST00000506042 ANGEL1Q9UNK9 670 aaKnown RBP26.65■■□□□ 1.86
SQSTM1-210ENST00000506042 CASP7P55210 303 aa26.64■■□□□ 1.86
SQSTM1-210ENST00000506042 MOB2Q70IA6 237 aa26.64■■□□□ 1.86
SQSTM1-210ENST00000506042 MTMR14Q8NCE2 650 aa26.64■■□□□ 1.86
SQSTM1-210ENST00000506042 SLC10A4Q96EP9 437 aa26.64■■□□□ 1.86
SQSTM1-210ENST00000506042 MANSC4A6NHS7 340 aaPredicted RBP26.63■■□□□ 1.85
SQSTM1-210ENST00000506042 TNFAIP1Q13829 316 aa26.63■■□□□ 1.85
SQSTM1-210ENST00000506042 OTUD7BQ6GQQ9 843 aa26.63■■□□□ 1.85
SQSTM1-210ENST00000506042 LDHAL6AQ6ZMR3 332 aa26.63■■□□□ 1.85
SQSTM1-210ENST00000506042 DEFB129Q9H1M3 183 aa26.63■■□□□ 1.85
SQSTM1-210ENST00000506042 WTIPA6NIX2 430 aaPredicted RBP26.62■■□□□ 1.85
SQSTM1-210ENST00000506042 VAMP4O75379 141 aa26.62■■□□□ 1.85
SQSTM1-210ENST00000506042 TBC1D8O95759 1140 aa26.62■■□□□ 1.85
SQSTM1-210ENST00000506042 PRKG1Q13976 671 aa26.62■■□□□ 1.85
SQSTM1-210ENST00000506042 ZNF296Q8WUU4 475 aaPredicted RBP26.62■■□□□ 1.85
SQSTM1-210ENST00000506042 SCAF8Q9UPN6 1271 aaKnown RBP26.62■■□□□ 1.85
SQSTM1-210ENST00000506042 ZNF646O15015 1829 aaPredicted RBP26.61■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms