RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 DOK7Q18PE1 504 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 GGNBP2Q9H3C7 697 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 NARFQ9UHQ1 456 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 DEPDC5O75140 1603 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 COL16A1Q07092 1604 aaPredicted RBP6.11□□□□□ -1.43
USP54-216ENST00000498143 AIMP1Q12904 312 aaKnown RBP6.11□□□□□ -1.43
USP54-216ENST00000498143 RC3H1Q5TC82 1133 aaKnown RBP6.11□□□□□ -1.43
USP54-216ENST00000498143 RPAINQ86UA6 219 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 PDILTQ8N807 584 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 PIGBQ92521 554 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 FEZ1Q99689 392 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 SGIP1Q9BQI5 828 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 TLR3O15455 904 aaKnown RBP6.11□□□□□ -1.43
USP54-216ENST00000498143 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.11□□□□□ -1.43
USP54-216ENST00000498143 OTUD5Q96G74 571 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 PAWRQ96IZ0 340 aaKnown RBP6.11□□□□□ -1.43
USP54-216ENST00000498143 PRRX2Q99811 253 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 DBNDD1Q9H9R9 158 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 FAM13BQ9NYF5 915 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 MYPNQ86TC9 1320 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 ZNF318Q5VUA4 2279 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 POTEFA5A3E0 1075 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 ADM5C9JUS6 153 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 MAFGO15525 162 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 UFL1O94874 794 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 FMNL2Q96PY5 1086 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 C1orf115Q9H7X2 142 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 C14orf93Q9H972 538 aaKnown RBP6.11□□□□□ -1.43
USP54-216ENST00000498143 GPRC5DQ9NZD1 345 aa6.11□□□□□ -1.43
USP54-216ENST00000498143 MUC6Q6W4X9 2439 aa6.1□□□□□ -1.43
USP54-216ENST00000498143 CETPP11597 493 aa6.1□□□□□ -1.43
USP54-216ENST00000498143 HSP90AB2PQ58FF8 381 aa6.1□□□□□ -1.43
USP54-216ENST00000498143 TRPM4Q8TD43 1214 aa6.1□□□□□ -1.43
USP54-216ENST00000498143 CDCA5Q96FF9 252 aa6.1□□□□□ -1.43
USP54-216ENST00000498143 CSRNP1Q96S65 589 aa6.1□□□□□ -1.43
USP54-216ENST00000498143 POLR1AO95602 1720 aaPredicted RBP6.1□□□□□ -1.43
USP54-216ENST00000498143 GTF2A2P52657 109 aa6.1□□□□□ -1.43
USP54-216ENST00000498143 EPHA10Q5JZY3 1008 aa6.1□□□□□ -1.43
USP54-216ENST00000498143 PNMA3Q9UL41 463 aa6.1□□□□□ -1.43
USP54-216ENST00000498143 PRR36Q9H6K5 1346 aa6.1□□□□□ -1.43
USP54-216ENST00000498143 SLIT1O75093 1534 aa6.1□□□□□ -1.43
USP54-216ENST00000498143 PLIN1O60240 522 aa6.1□□□□□ -1.43
USP54-216ENST00000498143 PARK7Q99497 189 aaKnown RBP6.1□□□□□ -1.43
USP54-216ENST00000498143 FTOQ9C0B1 505 aaKnown RBP eCLIP6.1□□□□□ -1.43
USP54-216ENST00000498143 NCDNQ9UBB6 729 aa6.1□□□□□ -1.43
USP54-216ENST00000498143 PTCH2Q9Y6C5 1203 aa6.1□□□□□ -1.43
USP54-216ENST00000498143 LETM1O95202 739 aaPredicted RBP6.09□□□□□ -1.43
USP54-216ENST00000498143 RPS12P25398 132 aaKnown RBP6.09□□□□□ -1.43
USP54-216ENST00000498143 KCNJ6P48051 423 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 MMP14P50281 582 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 U2AF1L4Q8WU68 220 aaKnown RBP6.09□□□□□ -1.43
USP54-216ENST00000498143 KIF12Q96FN5 646 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 CCDC34Q96HJ3 373 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 MYD88Q99836 296 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 SMIM22K7EJ46 135 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 GFRA3O60609 400 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 KIF20AO95235 890 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 CCL5P13501 91 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 GTF2A1P52655 376 aaPredicted RBP6.09□□□□□ -1.43
USP54-216ENST00000498143 NFATC2IPQ8NCF5 419 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 ARRDC4Q8NCT1 418 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 ELP3Q9H9T3 547 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 GPHNQ9NQX3 736 aaPredicted RBP6.09□□□□□ -1.43
USP54-216ENST00000498143 GGA1Q9UJY5 639 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 PTPN22Q9Y2R2 807 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 ERBB3P21860 1342 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 MAPK8IP3Q9UPT6 1336 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 GOLGA6L19H0YKK7 550 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 CSPG5O95196 566 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 IGHMBP2P38935 993 aaKnown RBP6.09□□□□□ -1.43
USP54-216ENST00000498143 PTPN5P54829 565 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 ATP2B2Q01814 1243 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 GPS2Q13227 327 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 WDR43Q15061 677 aaKnown RBP eCLIP6.09□□□□□ -1.43
USP54-216ENST00000498143 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.09□□□□□ -1.43
USP54-216ENST00000498143 LINC00116Q8NCU8 138 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 FRAT1Q92837 279 aaPredicted RBP6.09□□□□□ -1.43
USP54-216ENST00000498143 HHIPL1Q96JK4 782 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 SENP6Q9GZR1 1112 aaPredicted RBP6.09□□□□□ -1.43
USP54-216ENST00000498143 TMOD4Q9NZQ9 345 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 KNSTRNQ9Y448 316 aa6.09□□□□□ -1.43
USP54-216ENST00000498143 YTHDC2Q9H6S0 1430 aaKnown RBP6.09□□□□□ -1.44
USP54-216ENST00000498143 ACTN1P12814 892 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 USP8P40818 1118 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 DGLUCYQ7Z3D6 616 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 SLAIN1Q8ND83 568 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 MRS2Q9HD23 443 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 REREQ9P2R6 1566 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 RIF1Q5UIP0 2472 aaKnown RBP6.08□□□□□ -1.44
USP54-216ENST00000498143 GNRH1P01148 92 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 CCDC175P0C221 793 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 ID4P47928 161 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 MBIPQ9NS73 344 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 KIF3AQ9Y496 699 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 PTPN23Q9H3S7 1636 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 KDM5AP29375 1690 aaKnown RBP6.08□□□□□ -1.44
USP54-216ENST00000498143 SPTBN2O15020 2390 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 ERICH4A6NGS2 130 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 ST18O60284 1047 aa6.08□□□□□ -1.44
USP54-216ENST00000498143 CCNA1P78396 465 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms