RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 PRPF40BQ6NWY9 871 aaKnown RBP9.95□□□□□ -0.82
USP54-215ENST00000497106 GRAPLQ8TC17 118 aaPredicted RBP9.95□□□□□ -0.82
USP54-215ENST00000497106 SMC3Q9UQE7 1217 aa9.95□□□□□ -0.82
USP54-215ENST00000497106 BAG3O95817 575 aa9.95□□□□□ -0.82
USP54-215ENST00000497106 HIBADHP31937 336 aaKnown RBP9.95□□□□□ -0.82
USP54-215ENST00000497106 FBXW7Q969H0 707 aa9.95□□□□□ -0.82
USP54-215ENST00000497106 ABCF2Q9UG63 623 aa9.95□□□□□ -0.82
USP54-215ENST00000497106 H0YIN7 160 aa9.95□□□□□ -0.82
USP54-215ENST00000497106 GRIPAP1Q4V328 841 aa9.95□□□□□ -0.82
USP54-215ENST00000497106 WDR66Q8TBY9 1149 aa9.95□□□□□ -0.82
USP54-215ENST00000497106 ZNF512BQ96KM6 892 aaPredicted RBP9.95□□□□□ -0.82
USP54-215ENST00000497106 XDHP47989 1333 aa9.95□□□□□ -0.82
USP54-215ENST00000497106 C6orf229H3BNL8 230 aa9.94□□□□□ -0.82
USP54-215ENST00000497106 TDO2P48775 406 aa9.94□□□□□ -0.82
USP54-215ENST00000497106 CHAF1AQ13111 956 aaPredicted RBP9.94□□□□□ -0.82
USP54-215ENST00000497106 FAM184AQ8NB25 1140 aa9.94□□□□□ -0.82
USP54-215ENST00000497106 ZNF622Q969S3 477 aaKnown RBP eCLIP9.94□□□□□ -0.82
USP54-215ENST00000497106 NAPBQ9H115 298 aa9.94□□□□□ -0.82
USP54-215ENST00000497106 CC2D2BQ6DHV5 1058 aa9.94□□□□□ -0.82
USP54-215ENST00000497106 SPATA5Q8NB90 893 aa9.94□□□□□ -0.82
USP54-215ENST00000497106 SPRYD3Q8NCJ5 442 aa9.94□□□□□ -0.82
USP54-215ENST00000497106 CNKSR1Q969H4 720 aa9.94□□□□□ -0.82
USP54-215ENST00000497106 KAZALD1Q96I82 304 aa9.94□□□□□ -0.82
USP54-215ENST00000497106 DSCC1Q9BVC3 393 aa9.94□□□□□ -0.82
USP54-215ENST00000497106 RBM8AQ9Y5S9 174 aaKnown RBP9.94□□□□□ -0.82
USP54-215ENST00000497106 PLCG2P16885 1265 aa9.94□□□□□ -0.82
USP54-215ENST00000497106 PUS3Q9BZE2 481 aaKnown RBP9.94□□□□□ -0.82
USP54-215ENST00000497106 SNRKQ9NRH2 765 aa9.94□□□□□ -0.82
USP54-215ENST00000497106 PAPPAQ13219 1627 aa9.93□□□□□ -0.82
USP54-215ENST00000497106 MAST3O60307 1309 aa9.93□□□□□ -0.82
USP54-215ENST00000497106 SLC9C2Q5TAH2 1124 aa9.93□□□□□ -0.82
USP54-215ENST00000497106 ATG9AQ7Z3C6 839 aa9.93□□□□□ -0.82
USP54-215ENST00000497106 TRIM34Q9BYJ4 488 aa9.93□□□□□ -0.82
USP54-215ENST00000497106 CRNKL1Q9BZJ0 848 aaKnown RBP9.93□□□□□ -0.82
USP54-215ENST00000497106 UBN2Q6ZU65 1347 aa9.93□□□□□ -0.82
USP54-215ENST00000497106 ZNF213O14771 459 aa9.93□□□□□ -0.82
USP54-215ENST00000497106 NPR1P16066 1061 aa9.93□□□□□ -0.82
USP54-215ENST00000497106 CASTP20810 708 aaKnown RBP9.93□□□□□ -0.82
USP54-215ENST00000497106 TBC1D22AQ8WUA7 517 aa9.93□□□□□ -0.82
USP54-215ENST00000497106 ZNF609O15014 1411 aa9.93□□□□□ -0.82
USP54-215ENST00000497106 GLIPR1L2Q4G1C9 344 aa9.93□□□□□ -0.82
USP54-215ENST00000497106 SOGA3Q5TF21 947 aa9.93□□□□□ -0.82
USP54-215ENST00000497106 CCDC102BQ68D86 513 aa9.93□□□□□ -0.82
USP54-215ENST00000497106 HELBQ8NG08 1087 aaPredicted RBP9.93□□□□□ -0.82
USP54-215ENST00000497106 RIPOR2Q9Y4F9 1068 aa9.93□□□□□ -0.82
USP54-215ENST00000497106 CPLX1O14810 134 aa9.92□□□□□ -0.82
USP54-215ENST00000497106 NFIXQ14938 502 aa9.92□□□□□ -0.82
USP54-215ENST00000497106 UBE3CQ15386 1083 aa9.92□□□□□ -0.82
USP54-215ENST00000497106 NAA16Q6N069 864 aaPredicted RBP9.92□□□□□ -0.82
USP54-215ENST00000497106 NOL8Q76FK4 1167 aaKnown RBP9.92□□□□□ -0.82
USP54-215ENST00000497106 C5P01031 1676 aa9.92□□□□□ -0.82
USP54-215ENST00000497106 SKOR2Q2VWA4 1001 aaPredicted RBP9.92□□□□□ -0.82
USP54-215ENST00000497106 TM6SF1Q9BZW5 370 aa9.92□□□□□ -0.82
USP54-215ENST00000497106 CNNM2Q9H8M5 875 aa9.92□□□□□ -0.82
USP54-215ENST00000497106 NBR1Q14596 966 aa9.92□□□□□ -0.82
USP54-215ENST00000497106 NFXL1Q6ZNB6 911 aa9.92□□□□□ -0.82
USP54-215ENST00000497106 ZC3H12CQ9C0D7 883 aaKnown RBP9.92□□□□□ -0.82
USP54-215ENST00000497106 UFL1O94874 794 aa9.92□□□□□ -0.82
USP54-215ENST00000497106 HSPA4P34932 840 aa9.92□□□□□ -0.82
USP54-215ENST00000497106 KCNQ4P56696 695 aa9.92□□□□□ -0.82
USP54-215ENST00000497106 CCDC178Q5BJE1 867 aa9.92□□□□□ -0.82
USP54-215ENST00000497106 ANP32BQ92688 251 aaKnown RBP9.92□□□□□ -0.82
USP54-215ENST00000497106 TBC1D2Q9BYX2 928 aa9.92□□□□□ -0.82
USP54-215ENST00000497106 LIMCH1Q9UPQ0 1083 aa9.92□□□□□ -0.82
USP54-215ENST00000497106 CDKL5O76039 1030 aa9.91□□□□□ -0.82
USP54-215ENST00000497106 CYP7A1P22680 504 aa9.91□□□□□ -0.82
USP54-215ENST00000497106 AKAP17AQ02040 695 aaKnown RBP9.91□□□□□ -0.82
USP54-215ENST00000497106 NEK1Q96PY6 1258 aa9.91□□□□□ -0.82
USP54-215ENST00000497106 CRAMP1Q96RY5 1269 aa9.91□□□□□ -0.82
USP54-215ENST00000497106 NSFL1CQ9UNZ2 370 aaKnown RBP9.91□□□□□ -0.82
USP54-215ENST00000497106 RPAP1Q9BWH6 1393 aaPredicted RBP9.91□□□□□ -0.82
USP54-215ENST00000497106 ZNF804BA4D1E1 1349 aa9.91□□□□□ -0.82
USP54-215ENST00000497106 SALL3Q9BXA9 1300 aa9.91□□□□□ -0.82
USP54-215ENST00000497106 GNL2Q13823 731 aaKnown RBP9.91□□□□□ -0.82
USP54-215ENST00000497106 SLC16A10Q8TF71 515 aa9.91□□□□□ -0.82
USP54-215ENST00000497106 BRIP1Q9BX63 1249 aa9.91□□□□□ -0.82
USP54-215ENST00000497106 WNK3Q9BYP7 1800 aa9.91□□□□□ -0.82
USP54-215ENST00000497106 H3BQV1 296 aa9.91□□□□□ -0.82
USP54-215ENST00000497106 NT5C2P49902 561 aa9.91□□□□□ -0.82
USP54-215ENST00000497106 IFFO2Q5TF58 517 aa9.91□□□□□ -0.82
USP54-215ENST00000497106 NCOA7Q8NI08 942 aa9.91□□□□□ -0.82
USP54-215ENST00000497106 KRT23Q9C075 422 aa9.91□□□□□ -0.82
USP54-215ENST00000497106 SEC31BQ9NQW1 1179 aa9.91□□□□□ -0.82
USP54-215ENST00000497106 UBR2Q8IWV8 1755 aa9.91□□□□□ -0.82
USP54-215ENST00000497106 MAGEB6P1A0A0J9YX57 407 aa9.91□□□□□ -0.82
USP54-215ENST00000497106 PPEF1O14829 653 aaPredicted RBP9.91□□□□□ -0.82
USP54-215ENST00000497106 SEC24BO95487 1268 aa9.91□□□□□ -0.82
USP54-215ENST00000497106 ZAP70P43403 619 aa9.91□□□□□ -0.82
USP54-215ENST00000497106 CREB3L3Q68CJ9 461 aa9.91□□□□□ -0.82
USP54-215ENST00000497106 SYAP1Q96A49 352 aaPredicted RBP9.91□□□□□ -0.82
USP54-215ENST00000497106 TLR7Q9NYK1 1049 aaKnown RBP9.91□□□□□ -0.82
USP54-215ENST00000497106 ZMYM1Q5SVZ6 1142 aa9.9□□□□□ -0.82
USP54-215ENST00000497106 VPS53Q5VIR6 699 aa9.9□□□□□ -0.82
USP54-215ENST00000497106 MASTLQ96GX5 879 aa9.9□□□□□ -0.82
USP54-215ENST00000497106 GOLGA6L4A6NEF3 574 aa9.9□□□□□ -0.82
USP54-215ENST00000497106 TAF5LO75529 589 aa9.9□□□□□ -0.82
USP54-215ENST00000497106 LDHBP07195 334 aaKnown RBP9.9□□□□□ -0.82
USP54-215ENST00000497106 SLC4A3P48751 1232 aa9.9□□□□□ -0.82
USP54-215ENST00000497106 ARID4AP29374 1257 aaPredicted RBP9.9□□□□□ -0.82
USP54-215ENST00000497106 PPP4R3BQ5MIZ7 849 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms