RNA–Protein interactions for RNA: ENST00000497089.1

HOXA9-206, Transcript of homeobox A9, humanhuman

TSL 1 (best)

Gene HOXA9, Length 1,393 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-206ENST00000497089 TRMT44Q8IYL2 757 aaKnown RBP8.62□□□□□ -1.03
HOXA9-206ENST00000497089 DCAF5Q96JK2 942 aa8.62□□□□□ -1.03
HOXA9-206ENST00000497089 TMOD3Q9NYL9 352 aa8.62□□□□□ -1.03
HOXA9-206ENST00000497089 C4BP0C0L5 1744 aa8.62□□□□□ -1.03
HOXA9-206ENST00000497089 KDM6AO15550 1401 aaPredicted RBP8.62□□□□□ -1.03
HOXA9-206ENST00000497089 COL3A1P02461 1466 aaPredicted RBP8.62□□□□□ -1.03
HOXA9-206ENST00000497089 SLFNL1Q499Z3 407 aa8.61□□□□□ -1.03
HOXA9-206ENST00000497089 SULT6B1Q6IMI4 303 aa8.61□□□□□ -1.03
HOXA9-206ENST00000497089 TBC1D9Q6ZT07 1266 aa8.61□□□□□ -1.03
HOXA9-206ENST00000497089 DZIP3Q86Y13 1208 aaKnown RBP8.61□□□□□ -1.03
HOXA9-206ENST00000497089 NFATC2IPQ8NCF5 419 aa8.61□□□□□ -1.03
HOXA9-206ENST00000497089 FLAD1Q8NFF5 587 aa8.61□□□□□ -1.03
HOXA9-206ENST00000497089 SYT17Q9BSW7 474 aa8.61□□□□□ -1.03
HOXA9-206ENST00000497089 UBR3Q6ZT12 1888 aa8.61□□□□□ -1.03
HOXA9-206ENST00000497089 SCN11AQ9UI33 1791 aa8.61□□□□□ -1.03
HOXA9-206ENST00000497089 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.61□□□□□ -1.03
HOXA9-206ENST00000497089 LOC102724428A0A0B4J2F2 783 aa8.61□□□□□ -1.03
HOXA9-206ENST00000497089 CCER2I3L3R5 266 aa8.61□□□□□ -1.03
HOXA9-206ENST00000497089 SIK1P57059 783 aa8.61□□□□□ -1.03
HOXA9-206ENST00000497089 CC2D1BQ5T0F9 858 aaKnown RBP8.61□□□□□ -1.03
HOXA9-206ENST00000497089 ZNF530Q6P9A1 599 aaPredicted RBP8.61□□□□□ -1.03
HOXA9-206ENST00000497089 COL23A1Q86Y22 540 aaPredicted RBP8.61□□□□□ -1.03
HOXA9-206ENST00000497089 MPNDQ8N594 471 aa8.61□□□□□ -1.03
HOXA9-206ENST00000497089 FHDC1Q9C0D6 1143 aaPredicted RBP8.61□□□□□ -1.03
HOXA9-206ENST00000497089 ATG3Q9NT62 314 aa8.61□□□□□ -1.03
HOXA9-206ENST00000497089 CEP126Q9P2H0 1117 aa8.61□□□□□ -1.03
HOXA9-206ENST00000497089 ASAP1Q9ULH1 1129 aa8.61□□□□□ -1.03
HOXA9-206ENST00000497089 PDZRN3Q9UPQ7 1066 aa8.61□□□□□ -1.03
HOXA9-206ENST00000497089 MAFBQ9Y5Q3 323 aaPredicted RBP8.61□□□□□ -1.03
HOXA9-206ENST00000497089 ADAMTS7Q9UKP4 1686 aa8.6□□□□□ -1.03
HOXA9-206ENST00000497089 CICQ96RK0 1608 aaPredicted RBP8.6□□□□□ -1.03
HOXA9-206ENST00000497089 SKIP12755 728 aa8.6□□□□□ -1.03
HOXA9-206ENST00000497089 SNIP1Q8TAD8 396 aaKnown RBP8.6□□□□□ -1.03
HOXA9-206ENST00000497089 SLC10A4Q96EP9 437 aa8.6□□□□□ -1.03
HOXA9-206ENST00000497089 CCDC136Q96JN2 1154 aa8.6□□□□□ -1.03
HOXA9-206ENST00000497089 CDK15Q96Q40 435 aa8.6□□□□□ -1.03
HOXA9-206ENST00000497089 TLL2Q9Y6L7 1015 aa8.6□□□□□ -1.03
HOXA9-206ENST00000497089 COL5A3P25940 1745 aaPredicted RBP8.59□□□□□ -1.03
HOXA9-206ENST00000497089 DIAPH1O60610 1272 aaKnown RBP8.59□□□□□ -1.03
HOXA9-206ENST00000497089 POLD1P28340 1107 aa8.59□□□□□ -1.03
HOXA9-206ENST00000497089 CABP4P57796 275 aa8.59□□□□□ -1.03
HOXA9-206ENST00000497089 ITPK1Q13572 414 aa8.59□□□□□ -1.03
HOXA9-206ENST00000497089 C1orf141Q5JVX7 400 aa8.59□□□□□ -1.03
HOXA9-206ENST00000497089 CYP4X1Q8N118 509 aa8.59□□□□□ -1.03
HOXA9-206ENST00000497089 RETREG2Q8NC44 543 aa8.59□□□□□ -1.03
HOXA9-206ENST00000497089 TOR4AQ9NXH8 423 aa8.59□□□□□ -1.03
HOXA9-206ENST00000497089 CDV3Q9UKY7 258 aaKnown RBP8.59□□□□□ -1.03
HOXA9-206ENST00000497089 MAP4K5Q9Y4K4 846 aa8.59□□□□□ -1.03
HOXA9-206ENST00000497089 MRC1P22897 1456 aa8.58□□□□□ -1.04
HOXA9-206ENST00000497089 SSFA2P28290 1259 aa8.58□□□□□ -1.04
HOXA9-206ENST00000497089 AKAP4Q5JQC9 854 aa8.58□□□□□ -1.04
HOXA9-206ENST00000497089 AMIGO3Q86WK7 504 aa8.58□□□□□ -1.04
HOXA9-206ENST00000497089 RNF135Q8IUD6 432 aa8.58□□□□□ -1.04
HOXA9-206ENST00000497089 LINC00116Q8NCU8 138 aa8.58□□□□□ -1.04
HOXA9-206ENST00000497089 SLC4A9Q96Q91 983 aa8.58□□□□□ -1.04
HOXA9-206ENST00000497089 VIRMAQ69YN4 1812 aaKnown RBP8.58□□□□□ -1.04
HOXA9-206ENST00000497089 TTC24A2A3L6 582 aaPredicted RBP8.57□□□□□ -1.04
HOXA9-206ENST00000497089 PIK3CDO00329 1044 aa8.57□□□□□ -1.04
HOXA9-206ENST00000497089 ALDH1A1P00352 501 aa8.57□□□□□ -1.04
HOXA9-206ENST00000497089 HMOX1P09601 288 aa8.57□□□□□ -1.04
HOXA9-206ENST00000497089 ARID5BQ14865 1188 aa8.57□□□□□ -1.04
HOXA9-206ENST00000497089 VRTNQ9H8Y1 702 aa8.57□□□□□ -1.04
HOXA9-206ENST00000497089 VASH1Q7L8A9 365 aaPredicted RBP8.56□□□□□ -1.04
HOXA9-206ENST00000497089 TRAIPQ9BWF2 469 aa8.56□□□□□ -1.04
HOXA9-206ENST00000497089 CNTNAP4Q9C0A0 1308 aa8.56□□□□□ -1.04
HOXA9-206ENST00000497089 MYH14Q7Z406 1995 aaKnown RBP8.55□□□□□ -1.04
HOXA9-206ENST00000497089 TJP1Q07157 1748 aa8.55□□□□□ -1.04
HOXA9-206ENST00000497089 USP17L3A6NCW0 530 aa8.55□□□□□ -1.04
HOXA9-206ENST00000497089 USP17L4A6NCW7 530 aa8.55□□□□□ -1.04
HOXA9-206ENST00000497089 USP17L5A8MUK1 530 aa8.55□□□□□ -1.04
HOXA9-206ENST00000497089 J3QL48 77 aa8.55□□□□□ -1.04
HOXA9-206ENST00000497089 RNMTO43148 476 aaKnown RBP8.55□□□□□ -1.04
HOXA9-206ENST00000497089 LZTS3O60299 673 aaPredicted RBP8.55□□□□□ -1.04
HOXA9-206ENST00000497089 ADH1CP00326 375 aa8.55□□□□□ -1.04
HOXA9-206ENST00000497089 GRM5P41594 1212 aa8.55□□□□□ -1.04
HOXA9-206ENST00000497089 MTHFSDQ2M296 383 aaKnown RBP8.55□□□□□ -1.04
HOXA9-206ENST00000497089 NBPF20Q3BBV1 942 aa8.55□□□□□ -1.04
HOXA9-206ENST00000497089 USP17L2Q6R6M4 530 aa8.55□□□□□ -1.04
HOXA9-206ENST00000497089 USP17L1Q7RTZ2 530 aa8.55□□□□□ -1.04
HOXA9-206ENST00000497089 SLC52A2Q9HAB3 445 aa8.55□□□□□ -1.04
HOXA9-206ENST00000497089 PPP4R2Q9NY27 417 aa8.55□□□□□ -1.04
HOXA9-206ENST00000497089 CHD4Q14839 1912 aa8.54□□□□□ -1.04
HOXA9-206ENST00000497089 GFRA3O60609 400 aa8.54□□□□□ -1.04
HOXA9-206ENST00000497089 PPP2R1AP30153 589 aa8.54□□□□□ -1.04
HOXA9-206ENST00000497089 ANP32AP39687 249 aaKnown RBP8.54□□□□□ -1.04
HOXA9-206ENST00000497089 MAP7D1Q3KQU3 841 aa8.54□□□□□ -1.04
HOXA9-206ENST00000497089 RNF20Q5VTR2 975 aa8.54□□□□□ -1.04
HOXA9-206ENST00000497089 PLEKHM2Q8IWE5 1019 aa8.54□□□□□ -1.04
HOXA9-206ENST00000497089 CFAP53Q96M91 514 aa8.54□□□□□ -1.04
HOXA9-206ENST00000497089 KCTD15Q96SI1 283 aaPredicted RBP8.54□□□□□ -1.04
HOXA9-206ENST00000497089 LGR6Q9HBX8 967 aa8.54□□□□□ -1.04
HOXA9-206ENST00000497089 CD2APQ9Y5K6 639 aa8.54□□□□□ -1.04
HOXA9-206ENST00000497089 UBR2Q8IWV8 1755 aa8.54□□□□□ -1.04
HOXA9-206ENST00000497089 SIPA1L3O60292 1781 aaPredicted RBP8.53□□□□□ -1.04
HOXA9-206ENST00000497089 NRG2O14511 850 aaPredicted RBP8.53□□□□□ -1.04
HOXA9-206ENST00000497089 RPS6KA4O75676 772 aa8.53□□□□□ -1.04
HOXA9-206ENST00000497089 ATG7O95352 703 aa8.53□□□□□ -1.04
HOXA9-206ENST00000497089 SMPD1P17405 629 aa8.53□□□□□ -1.04
HOXA9-206ENST00000497089 MSL1Q68DK7 614 aa8.53□□□□□ -1.04
HOXA9-206ENST00000497089 PLPP7Q8NBV4 271 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms