RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 FAM98CQ17RN3 349 aaKnown RBP25.11■■□□□ 1.61
CCDC88B-208ENST00000492980 UTP14AQ9BVJ6 771 aaKnown RBP25.11■■□□□ 1.61
CCDC88B-208ENST00000492980 MTMR6Q9Y217 621 aa25.11■■□□□ 1.61
CCDC88B-208ENST00000492980 BCORQ6W2J9 1755 aa25.11■■□□□ 1.61
CCDC88B-208ENST00000492980 BCL9LQ86UU0 1499 aa25.11■■□□□ 1.61
CCDC88B-208ENST00000492980 HCLS1P14317 486 aaPredicted RBP25.1■■□□□ 1.61
CCDC88B-208ENST00000492980 PI16Q6UXB8 463 aa25.1■■□□□ 1.61
CCDC88B-208ENST00000492980 ZNF512BQ96KM6 892 aaPredicted RBP25.1■■□□□ 1.61
CCDC88B-208ENST00000492980 MCAMP43121 646 aa25.1■■□□□ 1.61
CCDC88B-208ENST00000492980 PARP10Q53GL7 1025 aa25.1■■□□□ 1.61
CCDC88B-208ENST00000492980 Q6ZUG5 572 aa25.09■■□□□ 1.61
CCDC88B-208ENST00000492980 TMEM87AQ8NBN3 555 aa25.09■■□□□ 1.61
CCDC88B-208ENST00000492980 GDPD2Q9HCC8 539 aa25.09■■□□□ 1.61
CCDC88B-208ENST00000492980 TMEM63CQ9P1W3 806 aa25.09■■□□□ 1.61
CCDC88B-208ENST00000492980 VPS72Q15906 364 aa25.09■■□□□ 1.61
CCDC88B-208ENST00000492980 FAM177BA6PVY3 158 aa25.08■■□□□ 1.61
CCDC88B-208ENST00000492980 HMGB1P09429 215 aaKnown RBP25.08■■□□□ 1.61
CCDC88B-208ENST00000492980 USP48Q86UV5 1035 aa25.08■■□□□ 1.61
CCDC88B-208ENST00000492980 C8orf37Q96NL8 207 aa25.08■■□□□ 1.61
CCDC88B-208ENST00000492980 MROH5Q6ZUA9 1318 aa25.07■■□□□ 1.6
CCDC88B-208ENST00000492980 A0A0G2JLW4 131 aa25.07■■□□□ 1.6
CCDC88B-208ENST00000492980 NTSR2O95665 410 aa25.07■■□□□ 1.6
CCDC88B-208ENST00000492980 WASHC4Q2M389 1173 aa25.07■■□□□ 1.6
CCDC88B-208ENST00000492980 APPBP2Q92624 585 aa25.07■■□□□ 1.6
CCDC88B-208ENST00000492980 CNPY2Q9Y2B0 182 aa25.07■■□□□ 1.6
CCDC88B-208ENST00000492980 ATP6V1DQ9Y5K8 247 aa25.07■■□□□ 1.6
CCDC88B-208ENST00000492980 UBAP1LF5GYI3 381 aa25.06■■□□□ 1.6
CCDC88B-208ENST00000492980 STK3Q13188 491 aa25.06■■□□□ 1.6
CCDC88B-208ENST00000492980 NGLY1Q96IV0 654 aa25.06■■□□□ 1.6
CCDC88B-208ENST00000492980 NIP7Q9Y221 180 aaKnown RBP eCLIP25.06■■□□□ 1.6
CCDC88B-208ENST00000492980 FOXP2O15409 715 aa25.06■■□□□ 1.6
CCDC88B-208ENST00000492980 GADD45BO75293 160 aaPredicted RBP25.06■■□□□ 1.6
CCDC88B-208ENST00000492980 FGFR2P21802 821 aa25.06■■□□□ 1.6
CCDC88B-208ENST00000492980 PUM3Q15397 648 aaKnown RBP25.06■■□□□ 1.6
CCDC88B-208ENST00000492980 DHX32Q7L7V1 743 aaKnown RBP25.06■■□□□ 1.6
CCDC88B-208ENST00000492980 GTF3C6Q969F1 213 aa25.06■■□□□ 1.6
CCDC88B-208ENST00000492980 VPS37CA5D8V6 355 aaPredicted RBP25.04■■□□□ 1.6
CCDC88B-208ENST00000492980 E7EWF7 191 aa25.04■■□□□ 1.6
CCDC88B-208ENST00000492980 PDIA4P13667 645 aaKnown RBP25.04■■□□□ 1.6
CCDC88B-208ENST00000492980 ARID4AP29374 1257 aaPredicted RBP25.04■■□□□ 1.6
CCDC88B-208ENST00000492980 LARP1BQ659C4 914 aaKnown RBP25.04■■□□□ 1.6
CCDC88B-208ENST00000492980 CCDC102BQ68D86 513 aa25.04■■□□□ 1.6
CCDC88B-208ENST00000492980 LPIN2Q92539 896 aa25.04■■□□□ 1.6
CCDC88B-208ENST00000492980 LINC00116Q8NCU8 138 aa25.04■■□□□ 1.6
CCDC88B-208ENST00000492980 LRRC2Q9BYS8 371 aa25.04■■□□□ 1.6
CCDC88B-208ENST00000492980 PUS7LQ9H0K6 701 aaKnown RBP25.04■■□□□ 1.6
CCDC88B-208ENST00000492980 SEC31BQ9NQW1 1179 aa25.04■■□□□ 1.6
CCDC88B-208ENST00000492980 RTL9Q8NET4 1388 aa25.04■■□□□ 1.6
CCDC88B-208ENST00000492980 PDCP20941 246 aa25.03■■□□□ 1.6
CCDC88B-208ENST00000492980 PHKA1P46020 1223 aa25.03■■□□□ 1.6
CCDC88B-208ENST00000492980 EXOSC10Q01780 885 aaKnown RBP25.03■■□□□ 1.6
CCDC88B-208ENST00000492980 TTLL5Q6EMB2 1281 aa25.03■■□□□ 1.6
CCDC88B-208ENST00000492980 HELBQ8NG08 1087 aaPredicted RBP25.03■■□□□ 1.6
CCDC88B-208ENST00000492980 BRF1Q92994 677 aa25.03■■□□□ 1.6
CCDC88B-208ENST00000492980 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.03■■□□□ 1.66e-7■■■■□ 21.9
CCDC88B-208ENST00000492980 MYO5AQ9Y4I1 1855 aaKnown RBP25.03■■□□□ 1.6
CCDC88B-208ENST00000492980 HSP90B1P14625 803 aaKnown RBP25.02■■□□□ 1.6
CCDC88B-208ENST00000492980 TTF1Q15361 905 aaPredicted RBP25.02■■□□□ 1.6
CCDC88B-208ENST00000492980 CCDC152Q4G0S7 254 aa25.02■■□□□ 1.6
CCDC88B-208ENST00000492980 AGXT2Q9BYV1 514 aa25.02■■□□□ 1.6
CCDC88B-208ENST00000492980 ZNF652Q9Y2D9 606 aa25.02■■□□□ 1.6
CCDC88B-208ENST00000492980 ATRNO75882 1429 aa25.02■■□□□ 1.6
CCDC88B-208ENST00000492980 UQCRFS1P1P0C7P4 283 aa25.01■■□□□ 1.59
CCDC88B-208ENST00000492980 ADD2P35612 726 aa25.01■■□□□ 1.59
CCDC88B-208ENST00000492980 MPHOSPH8Q99549 860 aa25.01■■□□□ 1.59
CCDC88B-208ENST00000492980 PIH1D3Q9NQM4 214 aaKnown RBP25.01■■□□□ 1.59
CCDC88B-208ENST00000492980 CTNNA3Q9UI47 895 aa25.01■■□□□ 1.59
CCDC88B-208ENST00000492980 ZSCAN25Q6NSZ9 544 aa25.01■■□□□ 1.59
CCDC88B-208ENST00000492980 FGD1P98174 961 aa25■■□□□ 1.59
CCDC88B-208ENST00000492980 CDC37L1Q7L3B6 337 aa25■■□□□ 1.59
CCDC88B-208ENST00000492980 FNBP4Q8N3X1 1017 aaPredicted RBP25■■□□□ 1.59
CCDC88B-208ENST00000492980 GPAA1O43292 621 aa25■■□□□ 1.59
CCDC88B-208ENST00000492980 SLC5A1P13866 664 aa25■■□□□ 1.59
CCDC88B-208ENST00000492980 DNM1Q05193 864 aaKnown RBP24.99■■□□□ 1.59
CCDC88B-208ENST00000492980 CLEC4GQ6UXB4 293 aa24.99■■□□□ 1.59
CCDC88B-208ENST00000492980 SYCE3A1L190 88 aa24.98■■□□□ 1.59
CCDC88B-208ENST00000492980 JAK2O60674 1132 aa24.98■■□□□ 1.59
CCDC88B-208ENST00000492980 PFKFB2O60825 505 aa24.98■■□□□ 1.59
CCDC88B-208ENST00000492980 FGAP02671 866 aa24.98■■□□□ 1.59
CCDC88B-208ENST00000492980 SCRN1Q12765 414 aa24.98■■□□□ 1.59
CCDC88B-208ENST00000492980 LRSAM1Q6UWE0 723 aa24.98■■□□□ 1.59
CCDC88B-208ENST00000492980 SCN7AQ01118 1682 aa24.98■■□□□ 1.59
CCDC88B-208ENST00000492980 FIBPO43427 364 aa24.98■■□□□ 1.59
CCDC88B-208ENST00000492980 NASPP49321 788 aaPredicted RBP24.98■■□□□ 1.59
CCDC88B-208ENST00000492980 IMMTQ16891 758 aaKnown RBP24.98■■□□□ 1.59
CCDC88B-208ENST00000492980 SLC9C2Q5TAH2 1124 aa24.98■■□□□ 1.59
CCDC88B-208ENST00000492980 THSD7AQ9UPZ6 1657 aa24.98■■□□□ 1.59
CCDC88B-208ENST00000492980 CNTNAP4Q9C0A0 1308 aa24.98■■□□□ 1.59
CCDC88B-208ENST00000492980 PTF1AQ7RTS3 328 aa24.97■■□□□ 1.59
CCDC88B-208ENST00000492980 SYAP1Q96A49 352 aaPredicted RBP24.97■■□□□ 1.59
CCDC88B-208ENST00000492980 BTAF1O14981 1849 aa24.97■■□□□ 1.59
CCDC88B-208ENST00000492980 DOCK2Q92608 1830 aa24.97■■□□□ 1.59
CCDC88B-208ENST00000492980 COL4A1P02462 1669 aa24.97■■□□□ 1.59
CCDC88B-208ENST00000492980 IGHMBP2P38935 993 aaKnown RBP24.97■■□□□ 1.59
CCDC88B-208ENST00000492980 KCNQ4P56696 695 aa24.97■■□□□ 1.59
CCDC88B-208ENST00000492980 UBE2HP62256 183 aa24.97■■□□□ 1.59
CCDC88B-208ENST00000492980 APOBRQ0VD83 1088 aa24.97■■□□□ 1.59
CCDC88B-208ENST00000492980 UBE3CQ15386 1083 aa24.97■■□□□ 1.59
CCDC88B-208ENST00000492980 RTN4Q9NQC3 1192 aaKnown RBP24.97■■□□□ 1.59
CCDC88B-208ENST00000492980 CASZ1Q86V15 1759 aa24.96■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms