RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 NEUROD6Q96NK8 337 aa11.75□□□□□ -0.53
USP54-214ENST00000492357 HAUS7Q99871 368 aa11.75□□□□□ -0.53
USP54-214ENST00000492357 DBNDD2Q9BQY9 259 aa11.75□□□□□ -0.53
USP54-214ENST00000492357 CCDC8Q9H0W5 538 aaPredicted RBP11.75□□□□□ -0.53
USP54-214ENST00000492357 ATP6V0A2Q9Y487 856 aa11.75□□□□□ -0.53
USP54-214ENST00000492357 CD2APQ9Y5K6 639 aa11.75□□□□□ -0.53
USP54-214ENST00000492357 ZNF804BA4D1E1 1349 aa11.75□□□□□ -0.53
USP54-214ENST00000492357 SDSP20132 328 aa11.74□□□□□ -0.53
USP54-214ENST00000492357 C8orf34Q49A92 452 aa11.74□□□□□ -0.53
USP54-214ENST00000492357 CAVIN4Q5BKX8 364 aa11.74□□□□□ -0.53
USP54-214ENST00000492357 MSL1Q68DK7 614 aa11.74□□□□□ -0.53
USP54-214ENST00000492357 SGIP1Q9BQI5 828 aa11.74□□□□□ -0.53
USP54-214ENST00000492357 PPEF1O14829 653 aaPredicted RBP11.73□□□□□ -0.53
USP54-214ENST00000492357 TAF1P21675 1872 aa11.73□□□□□ -0.53
USP54-214ENST00000492357 TIMM10P62072 90 aa11.73□□□□□ -0.53
USP54-214ENST00000492357 R3HDM1Q15032 1099 aaKnown RBP11.73□□□□□ -0.53
USP54-214ENST00000492357 TTC39AQ5SRH9 613 aa11.73□□□□□ -0.53
USP54-214ENST00000492357 C2CD5Q86YS7 1000 aa11.73□□□□□ -0.53
USP54-214ENST00000492357 RUFY2Q8WXA3 655 aa11.73□□□□□ -0.53
USP54-214ENST00000492357 RAD50Q92878 1312 aa11.73□□□□□ -0.53
USP54-214ENST00000492357 VPS33BQ9H267 617 aa11.73□□□□□ -0.53
USP54-214ENST00000492357 UPF2Q9HAU5 1272 aaKnown RBP11.73□□□□□ -0.53
USP54-214ENST00000492357 MED23Q9ULK4 1368 aa11.73□□□□□ -0.53
USP54-214ENST00000492357 KIAA1551Q9HCM1 1747 aa11.72□□□□□ -0.53
USP54-214ENST00000492357 COL4A1P02462 1669 aa11.72□□□□□ -0.53
USP54-214ENST00000492357 ZFYP08048 801 aaPredicted RBP11.72□□□□□ -0.53
USP54-214ENST00000492357 KCNJ4P48050 445 aa11.72□□□□□ -0.53
USP54-214ENST00000492357 CCDC102BQ68D86 513 aa11.72□□□□□ -0.53
USP54-214ENST00000492357 ZSCAN25Q6NSZ9 544 aa11.72□□□□□ -0.53
USP54-214ENST00000492357 TLR7Q9NYK1 1049 aaKnown RBP11.72□□□□□ -0.53
USP54-214ENST00000492357 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.72□□□□□ -0.53
USP54-214ENST00000492357 AKAP11Q9UKA4 1901 aa11.72□□□□□ -0.53
USP54-214ENST00000492357 IRS2Q9Y4H2 1338 aa11.71□□□□□ -0.53
USP54-214ENST00000492357 TRIM6-TRIM34B2RNG4 842 aa11.71□□□□□ -0.53
USP54-214ENST00000492357 REC8O95072 547 aa11.71□□□□□ -0.53
USP54-214ENST00000492357 FBXO33Q7Z6M2 555 aa11.71□□□□□ -0.53
USP54-214ENST00000492357 SKAP1Q86WV1 359 aa11.71□□□□□ -0.53
USP54-214ENST00000492357 CCDC24Q8N4L8 307 aa11.71□□□□□ -0.53
USP54-214ENST00000492357 KBTBD3Q8NAB2 608 aa11.71□□□□□ -0.53
USP54-214ENST00000492357 SUPT20HQ8NEM7 779 aa11.71□□□□□ -0.53
USP54-214ENST00000492357 EYA3Q99504 573 aa11.71□□□□□ -0.53
USP54-214ENST00000492357 SPON1Q9HCB6 807 aa11.71□□□□□ -0.53
USP54-214ENST00000492357 SNRKQ9NRH2 765 aa11.71□□□□□ -0.53
USP54-214ENST00000492357 PAG1Q9NWQ8 432 aa11.71□□□□□ -0.53
USP54-214ENST00000492357 ANKIB1Q9P2G1 1089 aa11.71□□□□□ -0.53
USP54-214ENST00000492357 GGA1Q9UJY5 639 aa11.71□□□□□ -0.53
USP54-214ENST00000492357 DENND2AQ9ULE3 1009 aa11.71□□□□□ -0.53
USP54-214ENST00000492357 BRCA1P38398 1863 aaKnown RBP11.7□□□□□ -0.54
USP54-214ENST00000492357 DOCK2Q92608 1830 aa11.7□□□□□ -0.54
USP54-214ENST00000492357 TBC1D9Q6ZT07 1266 aa11.7□□□□□ -0.54
USP54-214ENST00000492357 ZNF804AQ7Z570 1209 aa11.7□□□□□ -0.54
USP54-214ENST00000492357 TTLL6Q8N841 843 aa11.7□□□□□ -0.54
USP54-214ENST00000492357 RTFDC1Q9BY42 306 aaPredicted RBP11.7□□□□□ -0.54
USP54-214ENST00000492357 PDGFDQ9GZP0 370 aaPredicted RBP11.7□□□□□ -0.54
USP54-214ENST00000492357 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.7□□□□□ -0.54
USP54-214ENST00000492357 SNED1Q8TER0 1413 aa11.69□□□□□ -0.54
USP54-214ENST00000492357 SALL1Q9NSC2 1324 aa11.69□□□□□ -0.54
USP54-214ENST00000492357 MYH13Q9UKX3 1938 aa11.69□□□□□ -0.54
USP54-214ENST00000492357 TAF5LO75529 589 aa11.69□□□□□ -0.54
USP54-214ENST00000492357 ZBTB7AO95365 584 aa11.69□□□□□ -0.54
USP54-214ENST00000492357 CHMLP26374 656 aa11.69□□□□□ -0.54
USP54-214ENST00000492357 HIBADHP31937 336 aaKnown RBP11.69□□□□□ -0.54
USP54-214ENST00000492357 MFAP1P55081 439 aaKnown RBP11.69□□□□□ -0.54
USP54-214ENST00000492357 PRPF40BQ6NWY9 871 aaKnown RBP11.69□□□□□ -0.54
USP54-214ENST00000492357 VPS37DQ86XT2 251 aa11.69□□□□□ -0.54
USP54-214ENST00000492357 RTKN2Q8IZC4 609 aa11.69□□□□□ -0.54
USP54-214ENST00000492357 MPNDQ8N594 471 aa11.69□□□□□ -0.54
USP54-214ENST00000492357 ZGPATQ8N5A5 531 aaKnown RBP11.69□□□□□ -0.54
USP54-214ENST00000492357 C7orf43Q8WVR3 580 aa11.69□□□□□ -0.54
USP54-214ENST00000492357 RILPL2Q969X0 211 aa11.69□□□□□ -0.54
USP54-214ENST00000492357 FAM84BQ96KN1 310 aaPredicted RBP11.69□□□□□ -0.54
USP54-214ENST00000492357 BOLA2Q9H3K6 86 aa11.69□□□□□ -0.54
USP54-214ENST00000492357 MYH7P12883 1935 aa11.68□□□□□ -0.54
USP54-214ENST00000492357 ADORA1P30542 326 aa11.68□□□□□ -0.54
USP54-214ENST00000492357 PTGER2P43116 358 aa11.68□□□□□ -0.54
USP54-214ENST00000492357 CACNB1Q02641 598 aaPredicted RBP11.68□□□□□ -0.54
USP54-214ENST00000492357 DPP8Q6V1X1 898 aaPredicted RBP11.68□□□□□ -0.54
USP54-214ENST00000492357 SPATA5Q8NB90 893 aa11.68□□□□□ -0.54
USP54-214ENST00000492357 HELBQ8NG08 1087 aaPredicted RBP11.68□□□□□ -0.54
USP54-214ENST00000492357 TBC1D16Q8TBP0 767 aa11.68□□□□□ -0.54
USP54-214ENST00000492357 ZNF622Q969S3 477 aaKnown RBP eCLIP11.68□□□□□ -0.54
USP54-214ENST00000492357 PSMD1Q99460 953 aa11.68□□□□□ -0.54
USP54-214ENST00000492357 DIAPH3Q9NSV4 1193 aa11.68□□□□□ -0.54
USP54-214ENST00000492357 PIM2Q9P1W9 311 aa11.68□□□□□ -0.54
USP54-214ENST00000492357 NSFL1CQ9UNZ2 370 aaKnown RBP11.68□□□□□ -0.54
USP54-214ENST00000492357 SLX4Q8IY92 1834 aa11.67□□□□□ -0.54
USP54-214ENST00000492357 UFL1O94874 794 aa11.67□□□□□ -0.54
USP54-214ENST00000492357 IL1R1P14778 569 aa11.67□□□□□ -0.54
USP54-214ENST00000492357 MCAMP43121 646 aa11.67□□□□□ -0.54
USP54-214ENST00000492357 PHKA1P46020 1223 aa11.67□□□□□ -0.54
USP54-214ENST00000492357 GPSM2P81274 684 aa11.67□□□□□ -0.54
USP54-214ENST00000492357 CCDC93Q567U6 631 aa11.67□□□□□ -0.54
USP54-214ENST00000492357 SPTY2D1Q68D10 685 aaPredicted RBP11.67□□□□□ -0.54
USP54-214ENST00000492357 CERS3Q8IU89 383 aa11.67□□□□□ -0.54
USP54-214ENST00000492357 WDR66Q8TBY9 1149 aa11.67□□□□□ -0.54
USP54-214ENST00000492357 TBC1D22AQ8WUA7 517 aa11.67□□□□□ -0.54
USP54-214ENST00000492357 FSD1Q9BTV5 496 aa11.67□□□□□ -0.54
USP54-214ENST00000492357 COA1Q9GZY4 146 aa11.67□□□□□ -0.54
USP54-214ENST00000492357 HELLSQ9NRZ9 838 aa11.67□□□□□ -0.54
USP54-214ENST00000492357 HMG20BQ9P0W2 317 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms