RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 CCDC158Q5M9N0 1113 aa12.83□□□□□ -0.36
USP4-214ENST00000491791 DZIP3Q86Y13 1208 aaKnown RBP12.83□□□□□ -0.36
USP4-214ENST00000491791 ZNF594Q96JF6 807 aaPredicted RBP12.83□□□□□ -0.36
USP4-214ENST00000491791 ARAP2Q8WZ64 1704 aa12.82□□□□□ -0.36
USP4-214ENST00000491791 LOC102724428A0A0B4J2F2 783 aa12.82□□□□□ -0.36
USP4-214ENST00000491791 ANKRD18BA2A2Z9 1011 aa12.82□□□□□ -0.36
USP4-214ENST00000491791 IRS4O14654 1257 aaPredicted RBP12.82□□□□□ -0.36
USP4-214ENST00000491791 HMGB1P09429 215 aaKnown RBP12.82□□□□□ -0.36
USP4-214ENST00000491791 SIK1P57059 783 aa12.82□□□□□ -0.36
USP4-214ENST00000491791 ZNF445P59923 1031 aa12.82□□□□□ -0.36
USP4-214ENST00000491791 BLOC1S2Q6QNY1 142 aa12.82□□□□□ -0.36
USP4-214ENST00000491791 FLAD1Q8NFF5 587 aa12.82□□□□□ -0.36
USP4-214ENST00000491791 EDC3Q96F86 508 aaKnown RBP12.82□□□□□ -0.36
USP4-214ENST00000491791 XAGE2Q96GT9 111 aa12.82□□□□□ -0.36
USP4-214ENST00000491791 NEUROD6Q96NK8 337 aa12.82□□□□□ -0.36
USP4-214ENST00000491791 CAMTA2O94983 1202 aa12.81□□□□□ -0.36
USP4-214ENST00000491791 MBD3O95983 291 aa12.81□□□□□ -0.36
USP4-214ENST00000491791 ITGA6P23229 1130 aa12.81□□□□□ -0.36
USP4-214ENST00000491791 KCNJ4P48050 445 aa12.81□□□□□ -0.36
USP4-214ENST00000491791 MCTP1Q6DN14 999 aa12.81□□□□□ -0.36
USP4-214ENST00000491791 CLEC4GQ6UXB4 293 aa12.81□□□□□ -0.36
USP4-214ENST00000491791 DNAJC2Q99543 621 aaKnown RBP12.81□□□□□ -0.36
USP4-214ENST00000491791 AGXT2Q9BYV1 514 aa12.81□□□□□ -0.36
USP4-214ENST00000491791 TRMT112Q9UI30 125 aaKnown RBP12.81□□□□□ -0.36
USP4-214ENST00000491791 LY75O60449 1722 aa12.81□□□□□ -0.36
USP4-214ENST00000491791 UBN2Q6ZU65 1347 aa12.81□□□□□ -0.36
USP4-214ENST00000491791 BCORQ6W2J9 1755 aa12.81□□□□□ -0.36
USP4-214ENST00000491791 GOLGB1Q14789 3259 aaKnown RBP12.8□□□□□ -0.36
USP4-214ENST00000491791 ZSCAN22P10073 491 aaPredicted RBP12.8□□□□□ -0.36
USP4-214ENST00000491791 XRCC6P12956 609 aaKnown RBP eCLIP12.8□□□□□ -0.36
USP4-214ENST00000491791 FGFR2P21802 821 aa12.8□□□□□ -0.36
USP4-214ENST00000491791 CRKLP46109 303 aaKnown RBP12.8□□□□□ -0.36
USP4-214ENST00000491791 ST3GAL1Q11201 340 aa12.8□□□□□ -0.36
USP4-214ENST00000491791 ME3Q16798 604 aa12.8□□□□□ -0.36
USP4-214ENST00000491791 DDX46Q7L014 1031 aaKnown RBP12.8□□□□□ -0.36
USP4-214ENST00000491791 GREM2Q9H772 168 aa12.8□□□□□ -0.36
USP4-214ENST00000491791 SMC3Q9UQE7 1217 aa12.8□□□□□ -0.36
USP4-214ENST00000491791 ATP6V1DQ9Y5K8 247 aa12.8□□□□□ -0.36
USP4-214ENST00000491791 DDX49Q9Y6V7 483 aaKnown RBP12.8□□□□□ -0.36
USP4-214ENST00000491791 MROH5Q6ZUA9 1318 aa12.8□□□□□ -0.36
USP4-214ENST00000491791 GOLIM4O00461 696 aa12.79□□□□□ -0.36
USP4-214ENST00000491791 ZBTB22O15209 634 aa12.79□□□□□ -0.36
USP4-214ENST00000491791 STX6O43752 255 aa12.79□□□□□ -0.36
USP4-214ENST00000491791 SYT1P21579 422 aa12.79□□□□□ -0.36
USP4-214ENST00000491791 ATP6V1AP38606 617 aa12.79□□□□□ -0.36
USP4-214ENST00000491791 ITPK1Q13572 414 aa12.79□□□□□ -0.36
USP4-214ENST00000491791 TOB2Q14106 344 aaPredicted RBP12.79□□□□□ -0.36
USP4-214ENST00000491791 TAF7LQ5H9L4 462 aa12.79□□□□□ -0.36
USP4-214ENST00000491791 LDHAL6AQ6ZMR3 332 aa12.79□□□□□ -0.36
USP4-214ENST00000491791 COL23A1Q86Y22 540 aaPredicted RBP12.79□□□□□ -0.36
USP4-214ENST00000491791 NLGN2Q8NFZ4 835 aa12.79□□□□□ -0.36
USP4-214ENST00000491791 CHMP4CQ96CF2 233 aa12.79□□□□□ -0.36
USP4-214ENST00000491791 NEK1Q96PY6 1258 aa12.79□□□□□ -0.36
USP4-214ENST00000491791 TPCN1Q9ULQ1 816 aa12.79□□□□□ -0.36
USP4-214ENST00000491791 AKAP11Q9UKA4 1901 aa12.79□□□□□ -0.36
USP4-214ENST00000491791 MYH14Q7Z406 1995 aaKnown RBP12.79□□□□□ -0.36
USP4-214ENST00000491791 COL24A1Q17RW2 1714 aa12.79□□□□□ -0.36
USP4-214ENST00000491791 DDX60Q8IY21 1712 aaKnown RBP12.79□□□□□ -0.36
USP4-214ENST00000491791 PDE8BO95263 885 aa12.78□□□□□ -0.36
USP4-214ENST00000491791 LARGE1O95461 756 aa12.78□□□□□ -0.36
USP4-214ENST00000491791 CYP21A2P08686 494 aa12.78□□□□□ -0.36
USP4-214ENST00000491791 UQCRFS1P1P0C7P4 283 aa12.78□□□□□ -0.36
USP4-214ENST00000491791 PDCP20941 246 aa12.78□□□□□ -0.36
USP4-214ENST00000491791 ARID4AP29374 1257 aaPredicted RBP12.78□□□□□ -0.36
USP4-214ENST00000491791 EVCP57679 992 aa12.78□□□□□ -0.36
USP4-214ENST00000491791 EXOSC10Q01780 885 aaKnown RBP12.78□□□□□ -0.36
USP4-214ENST00000491791 TTF1Q15361 905 aaPredicted RBP12.78□□□□□ -0.36
USP4-214ENST00000491791 ATP2B3Q16720 1220 aa12.78□□□□□ -0.36
USP4-214ENST00000491791 TTC39AQ5SRH9 613 aa12.78□□□□□ -0.36
USP4-214ENST00000491791 RC3H1Q5TC82 1133 aaKnown RBP12.78□□□□□ -0.36
USP4-214ENST00000491791 UTP14AQ9BVJ6 771 aaKnown RBP12.78□□□□□ -0.36
USP4-214ENST00000491791 CNTNAP4Q9C0A0 1308 aa12.78□□□□□ -0.36
USP4-214ENST00000491791 PRPF40AO75400 957 aaKnown RBP12.77□□□□□ -0.37
USP4-214ENST00000491791 HSPD1P10809 573 aaKnown RBP12.77□□□□□ -0.37
USP4-214ENST00000491791 CPA1P15085 419 aa12.77□□□□□ -0.37
USP4-214ENST00000491791 GPTP24298 496 aa12.77□□□□□ -0.37
USP4-214ENST00000491791 METTL24Q5JXM2 366 aa12.77□□□□□ -0.37
USP4-214ENST00000491791 SUSD4Q5VX71 490 aa12.77□□□□□ -0.37
USP4-214ENST00000491791 MSL1Q68DK7 614 aa12.77□□□□□ -0.37
USP4-214ENST00000491791 ZSCAN25Q6NSZ9 544 aa12.77□□□□□ -0.37
USP4-214ENST00000491791 SYNE4Q8N205 404 aa12.77□□□□□ -0.37
USP4-214ENST00000491791 RGS22Q8NE09 1264 aa12.77□□□□□ -0.37
USP4-214ENST00000491791 LPIN2Q92539 896 aa12.77□□□□□ -0.37
USP4-214ENST00000491791 APPBP2Q92624 585 aa12.77□□□□□ -0.37
USP4-214ENST00000491791 SEC62Q99442 399 aaKnown RBP12.77□□□□□ -0.37
USP4-214ENST00000491791 GRPEL1Q9HAV7 217 aa12.77□□□□□ -0.37
USP4-214ENST00000491791 CTNNA3Q9UI47 895 aa12.77□□□□□ -0.37
USP4-214ENST00000491791 TBC1D2BQ9UPU7 963 aa12.77□□□□□ -0.37
USP4-214ENST00000491791 ZNF330Q9Y3S2 320 aaPredicted RBP12.77□□□□□ -0.37
USP4-214ENST00000491791 CD2APQ9Y5K6 639 aa12.77□□□□□ -0.37
USP4-214ENST00000491791 MAST3O60307 1309 aa12.77□□□□□ -0.37
USP4-214ENST00000491791 MYH7P12883 1935 aa12.76□□□□□ -0.37
USP4-214ENST00000491791 NTSR2O95665 410 aa12.76□□□□□ -0.37
USP4-214ENST00000491791 F13A1P00488 732 aa12.76□□□□□ -0.37
USP4-214ENST00000491791 ADORA1P30542 326 aa12.76□□□□□ -0.37
USP4-214ENST00000491791 UBE3CQ15386 1083 aa12.76□□□□□ -0.37
USP4-214ENST00000491791 PUM3Q15397 648 aaKnown RBP12.76□□□□□ -0.37
USP4-214ENST00000491791 SLC10A5Q5PT55 438 aa12.76□□□□□ -0.37
USP4-214ENST00000491791 GORABQ5T7V8 394 aa12.76□□□□□ -0.37
USP4-214ENST00000491791 DHX32Q7L7V1 743 aaKnown RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms