RNA–Protein interactions for RNA: ENST00000491128.5

SMPD4-219, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 2,570 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-219ENST00000491128 VPS53Q5VIR6 699 aa16.8■□□□□ 0.28
SMPD4-219ENST00000491128 PIH1D3Q9NQM4 214 aaKnown RBP16.8■□□□□ 0.28
SMPD4-219ENST00000491128 ST5P78524 1137 aa16.8■□□□□ 0.28
SMPD4-219ENST00000491128 LARP6Q9BRS8 491 aaKnown RBP16.8■□□□□ 0.28
SMPD4-219ENST00000491128 HMG20BQ9P0W2 317 aa16.8■□□□□ 0.28
SMPD4-219ENST00000491128 SPEF2Q9C093 1822 aa16.79■□□□□ 0.28
SMPD4-219ENST00000491128 AK9Q5TCS8 1911 aa16.79■□□□□ 0.28
SMPD4-219ENST00000491128 RAD50Q92878 1312 aa16.79■□□□□ 0.28
SMPD4-219ENST00000491128 IDH1O75874 414 aaKnown RBP16.79■□□□□ 0.28
SMPD4-219ENST00000491128 KCNJ4P48050 445 aa16.79■□□□□ 0.28
SMPD4-219ENST00000491128 TNRC6CQ9HCJ0 1690 aaKnown RBP16.79■□□□□ 0.28
SMPD4-219ENST00000491128 WASHC4Q2M389 1173 aa16.79■□□□□ 0.28
SMPD4-219ENST00000491128 TXNRD3Q86VQ6 643 aa16.79■□□□□ 0.28
SMPD4-219ENST00000491128 HSCBQ8IWL3 235 aa16.79■□□□□ 0.28
SMPD4-219ENST00000491128 RPGRQ92834 1020 aaKnown RBP16.79■□□□□ 0.28
SMPD4-219ENST00000491128 NEK4P51957 841 aa16.78■□□□□ 0.28
SMPD4-219ENST00000491128 SLC15A2Q16348 729 aa16.78■□□□□ 0.28
SMPD4-219ENST00000491128 OLFM4Q6UX06 510 aa16.78■□□□□ 0.28
SMPD4-219ENST00000491128 CCDC171Q6TFL3 1326 aa16.78■□□□□ 0.28
SMPD4-219ENST00000491128 A0A0G2JLW4 131 aa16.78■□□□□ 0.28
SMPD4-219ENST00000491128 HSPA4P34932 840 aa16.78■□□□□ 0.28
SMPD4-219ENST00000491128 OSBP2Q969R2 916 aa16.78■□□□□ 0.28
SMPD4-219ENST00000491128 RBM8AQ9Y5S9 174 aaKnown RBP16.78■□□□□ 0.28
SMPD4-219ENST00000491128 M0R2C6 588 aa16.77■□□□□ 0.28
SMPD4-219ENST00000491128 MCCP23508 829 aa16.77■□□□□ 0.28
SMPD4-219ENST00000491128 SF3B2Q13435 895 aaKnown RBP16.77■□□□□ 0.28
SMPD4-219ENST00000491128 ADCK5Q3MIX3 580 aa16.77■□□□□ 0.28
SMPD4-219ENST00000491128 ANKIB1Q9P2G1 1089 aa16.77■□□□□ 0.28
SMPD4-219ENST00000491128 HIP1O00291 1037 aa16.77■□□□□ 0.27
SMPD4-219ENST00000491128 NLGN1Q8N2Q7 840 aa16.77■□□□□ 0.27
SMPD4-219ENST00000491128 SPATA5Q8NB90 893 aa16.77■□□□□ 0.27
SMPD4-219ENST00000491128 SNX14Q9Y5W7 946 aa16.77■□□□□ 0.27
SMPD4-219ENST00000491128 LRP5O75197 1615 aa16.76■□□□□ 0.27
SMPD4-219ENST00000491128 RNF113AO15541 343 aaKnown RBP16.76■□□□□ 0.27
SMPD4-219ENST00000491128 MCMDC2Q4G0Z9 681 aa16.76■□□□□ 0.27
SMPD4-219ENST00000491128 PUS7LQ9H0K6 701 aaKnown RBP16.76■□□□□ 0.27
SMPD4-219ENST00000491128 WWC3Q9ULE0 1092 aa16.76■□□□□ 0.27
SMPD4-219ENST00000491128 DTNBO60941 627 aa16.76■□□□□ 0.27
SMPD4-219ENST00000491128 GRAPQ13588 217 aa16.76■□□□□ 0.27
SMPD4-219ENST00000491128 RABEP1Q15276 862 aa16.76■□□□□ 0.27
SMPD4-219ENST00000491128 SLC9C2Q5TAH2 1124 aa16.76■□□□□ 0.27
SMPD4-219ENST00000491128 VPS37DQ86XT2 251 aa16.76■□□□□ 0.27
SMPD4-219ENST00000491128 GRAPLQ8TC17 118 aaPredicted RBP16.76■□□□□ 0.27
SMPD4-219ENST00000491128 COL24A1Q17RW2 1714 aa16.75■□□□□ 0.27
SMPD4-219ENST00000491128 ARID4AP29374 1257 aaPredicted RBP16.75■□□□□ 0.27
SMPD4-219ENST00000491128 MAST3O60307 1309 aa16.75■□□□□ 0.27
SMPD4-219ENST00000491128 NBR1Q14596 966 aa16.75■□□□□ 0.27
SMPD4-219ENST00000491128 FAM84BQ96KN1 310 aaPredicted RBP16.75■□□□□ 0.27
SMPD4-219ENST00000491128 STK32BQ9NY57 414 aa16.75■□□□□ 0.27
SMPD4-219ENST00000491128 NSFL1CQ9UNZ2 370 aaKnown RBP16.75■□□□□ 0.27
SMPD4-219ENST00000491128 MED23Q9ULK4 1368 aa16.74■□□□□ 0.27
SMPD4-219ENST00000491128 TNS1Q9HBL0 1735 aaKnown RBP16.74■□□□□ 0.27
SMPD4-219ENST00000491128 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.74■□□□□ 0.27
SMPD4-219ENST00000491128 MAP4K1Q92918 833 aa16.74■□□□□ 0.27
SMPD4-219ENST00000491128 TCEANC2Q96MN5 208 aa16.74■□□□□ 0.27
SMPD4-219ENST00000491128 ABCF2Q9UG63 623 aa16.74■□□□□ 0.27
SMPD4-219ENST00000491128 FRAT2O75474 233 aaPredicted RBP16.74■□□□□ 0.27
SMPD4-219ENST00000491128 ZMYM1Q5SVZ6 1142 aa16.74■□□□□ 0.27
SMPD4-219ENST00000491128 PARP3Q9Y6F1 533 aa16.74■□□□□ 0.27
SMPD4-219ENST00000491128 LAMB2P55268 1798 aa16.73■□□□□ 0.27
SMPD4-219ENST00000491128 EIF5BO60841 1220 aaKnown RBP16.73■□□□□ 0.27
SMPD4-219ENST00000491128 NECTIN1Q15223 517 aa16.73■□□□□ 0.27
SMPD4-219ENST00000491128 CRY2Q49AN0 593 aa16.73■□□□□ 0.27
SMPD4-219ENST00000491128 CREB3L3Q68CJ9 461 aa16.73■□□□□ 0.27
SMPD4-219ENST00000491128 ILDR1Q86SU0 546 aaPredicted RBP16.73■□□□□ 0.27
SMPD4-219ENST00000491128 ZNF219Q9P2Y4 722 aaPredicted RBP16.73■□□□□ 0.27
SMPD4-219ENST00000491128 BAG6P46379 1132 aa16.73■□□□□ 0.27
SMPD4-219ENST00000491128 ZNF804BA4D1E1 1349 aa16.72■□□□□ 0.27
SMPD4-219ENST00000491128 UQCRFS1P1P0C7P4 283 aa16.72■□□□□ 0.27
SMPD4-219ENST00000491128 GPSM2P81274 684 aa16.72■□□□□ 0.27
SMPD4-219ENST00000491128 UBE4AQ14139 1066 aa16.72■□□□□ 0.27
SMPD4-219ENST00000491128 TTLL5Q6EMB2 1281 aa16.72■□□□□ 0.27
SMPD4-219ENST00000491128 SLC27A2O14975 620 aa16.72■□□□□ 0.27
SMPD4-219ENST00000491128 CASTP20810 708 aaKnown RBP16.72■□□□□ 0.27
SMPD4-219ENST00000491128 CHAF1AQ13111 956 aaPredicted RBP16.72■□□□□ 0.27
SMPD4-219ENST00000491128 SNX21Q969T3 373 aa16.72■□□□□ 0.27
SMPD4-219ENST00000491128 JAKMIP1Q96N16 626 aaKnown RBP16.72■□□□□ 0.27
SMPD4-219ENST00000491128 ZNF532Q9HCE3 1301 aa16.71■□□□□ 0.27
SMPD4-219ENST00000491128 K7ELQ4 463 aaPredicted RBP16.71■□□□□ 0.27
SMPD4-219ENST00000491128 HSP90AA1P07900 732 aaKnown RBP16.71■□□□□ 0.27
SMPD4-219ENST00000491128 CAVIN4Q5BKX8 364 aa16.71■□□□□ 0.27
SMPD4-219ENST00000491128 MAGEB6Q8N7X4 407 aa16.71■□□□□ 0.27
SMPD4-219ENST00000491128 FLAD1Q8NFF5 587 aa16.71■□□□□ 0.27
SMPD4-219ENST00000491128 RBM17Q96I25 401 aaKnown RBP16.71■□□□□ 0.27
SMPD4-219ENST00000491128 ZNF512BQ96KM6 892 aaPredicted RBP16.71■□□□□ 0.26
SMPD4-219ENST00000491128 CASZ1Q86V15 1759 aa16.7■□□□□ 0.26
SMPD4-219ENST00000491128 HSPD1P10809 573 aaKnown RBP16.7■□□□□ 0.26
SMPD4-219ENST00000491128 ZNF622Q969S3 477 aaKnown RBP eCLIP16.7■□□□□ 0.26
SMPD4-219ENST00000491128 LRP2BPQ9P2M1 347 aa16.7■□□□□ 0.26
SMPD4-219ENST00000491128 PDE6AP16499 860 aa16.7■□□□□ 0.26
SMPD4-219ENST00000491128 CHRNA5P30532 468 aa16.7■□□□□ 0.26
SMPD4-219ENST00000491128 MIGA1Q8NAN2 632 aa16.7■□□□□ 0.26
SMPD4-219ENST00000491128 HELLSQ9NRZ9 838 aa16.7■□□□□ 0.26
SMPD4-219ENST00000491128 ST18O60284 1047 aa16.69■□□□□ 0.26
SMPD4-219ENST00000491128 ADD2P35612 726 aa16.69■□□□□ 0.26
SMPD4-219ENST00000491128 HAND2P61296 217 aa16.69■□□□□ 0.26
SMPD4-219ENST00000491128 COL1A1P02452 1464 aaPredicted RBP16.69■□□□□ 0.26
SMPD4-219ENST00000491128 FOXP2O15409 715 aa16.69■□□□□ 0.26
SMPD4-219ENST00000491128 HIBADHP31937 336 aaKnown RBP16.69■□□□□ 0.26
SMPD4-219ENST00000491128 BRIP1Q9BX63 1249 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms