RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 ARHGAP45Q92619 1136 aa22.8■■□□□ 1.24
COL9A3-214ENST00000490398 DPF2Q92785 391 aa22.8■■□□□ 1.24
COL9A3-214ENST00000490398 MEIS3Q99687 375 aa22.8■■□□□ 1.24
COL9A3-214ENST00000490398 A0A1B0GUL6 1792 aa22.79■■□□□ 1.24
COL9A3-214ENST00000490398 KCNJ4P48050 445 aa22.79■■□□□ 1.24
COL9A3-214ENST00000490398 TBC1D10BQ4KMP7 808 aaPredicted RBP22.79■■□□□ 1.24
COL9A3-214ENST00000490398 RSBN1LQ6PCB5 846 aaPredicted RBP22.79■■□□□ 1.24
COL9A3-214ENST00000490398 PODNQ7Z5L7 613 aa22.79■■□□□ 1.24
COL9A3-214ENST00000490398 RIPOR2Q9Y4F9 1068 aa22.79■■□□□ 1.24
COL9A3-214ENST00000490398 TRAF5O00463 557 aa22.78■■□□□ 1.24
COL9A3-214ENST00000490398 RFX5P48382 616 aaPredicted RBP22.78■■□□□ 1.24
COL9A3-214ENST00000490398 INTS3Q68E01 1043 aaKnown RBP22.78■■□□□ 1.24
COL9A3-214ENST00000490398 CLUAP1Q96AJ1 413 aa22.78■■□□□ 1.24
COL9A3-214ENST00000490398 GMLQ99445 158 aa22.78■■□□□ 1.24
COL9A3-214ENST00000490398 USP17L3A6NCW0 530 aa22.77■■□□□ 1.24
COL9A3-214ENST00000490398 USP17L4A6NCW7 530 aa22.77■■□□□ 1.24
COL9A3-214ENST00000490398 H7C1D1 291 aa22.77■■□□□ 1.24
COL9A3-214ENST00000490398 DACT2Q5SW24 774 aa22.77■■□□□ 1.24
COL9A3-214ENST00000490398 RBM26Q5T8P6 1007 aaKnown RBP22.77■■□□□ 1.24
COL9A3-214ENST00000490398 DLK2Q6UY11 383 aa22.77■■□□□ 1.24
COL9A3-214ENST00000490398 ATF7IPQ6VMQ6 1270 aa22.77■■□□□ 1.24
COL9A3-214ENST00000490398 USP17L1Q7RTZ2 530 aa22.77■■□□□ 1.24
COL9A3-214ENST00000490398 COA1Q9GZY4 146 aa22.77■■□□□ 1.24
COL9A3-214ENST00000490398 LRRFIP2Q9Y608 721 aaKnown RBP22.77■■□□□ 1.24
COL9A3-214ENST00000490398 UBTFL1P0CB47 393 aaPredicted RBP22.76■■□□□ 1.23
COL9A3-214ENST00000490398 RPS12P25398 132 aaKnown RBP22.76■■□□□ 1.23
COL9A3-214ENST00000490398 C15orf52Q6ZUT6 534 aaKnown RBP22.75■■□□□ 1.23
COL9A3-214ENST00000490398 FBXW7Q969H0 707 aa22.75■■□□□ 1.23
COL9A3-214ENST00000490398 GLIS2Q9BZE0 524 aaPredicted RBP22.75■■□□□ 1.23
COL9A3-214ENST00000490398 CD209Q9NNX6 404 aa22.75■■□□□ 1.23
COL9A3-214ENST00000490398 PGAP2Q9UHJ9 254 aa22.75■■□□□ 1.23
COL9A3-214ENST00000490398 ASTN2O75129 1339 aaPredicted RBP22.75■■□□□ 1.23
COL9A3-214ENST00000490398 ZNF646O15015 1829 aaPredicted RBP22.75■■□□□ 1.23
COL9A3-214ENST00000490398 KLRG1Q96E93 195 aa22.74■■□□□ 1.23
COL9A3-214ENST00000490398 IPO8O15397 1037 aaKnown RBP22.73■■□□□ 1.23
COL9A3-214ENST00000490398 GTF2IP78347 998 aa22.73■■□□□ 1.23
COL9A3-214ENST00000490398 PTPN12Q05209 780 aaKnown RBP22.73■■□□□ 1.23
COL9A3-214ENST00000490398 AGBL3Q8NEM8 1001 aa22.73■■□□□ 1.23
COL9A3-214ENST00000490398 CREBZFQ9NS37 354 aa22.73■■□□□ 1.23
COL9A3-214ENST00000490398 PSME4Q14997 1843 aa22.73■■□□□ 1.23
COL9A3-214ENST00000490398 ZNF609O15014 1411 aa22.73■■□□□ 1.23
COL9A3-214ENST00000490398 ZNF280AP59817 542 aaPredicted RBP22.72■■□□□ 1.23
COL9A3-214ENST00000490398 STRIP1Q5VSL9 837 aa22.72■■□□□ 1.23
COL9A3-214ENST00000490398 ZKSCAN2Q63HK3 967 aa22.72■■□□□ 1.23
COL9A3-214ENST00000490398 TMEM57Q8N5G2 664 aa22.72■■□□□ 1.23
COL9A3-214ENST00000490398 VGLL2Q8N8G2 317 aa22.72■■□□□ 1.23
COL9A3-214ENST00000490398 JAG2Q9Y219 1238 aa22.72■■□□□ 1.23
COL9A3-214ENST00000490398 GYG1P46976 350 aa22.71■■□□□ 1.23
COL9A3-214ENST00000490398 KIF4BQ2VIQ3 1234 aa22.71■■□□□ 1.23
COL9A3-214ENST00000490398 MKRN1Q9UHC7 482 aaKnown RBP22.71■■□□□ 1.23
COL9A3-214ENST00000490398 TMEM88BA6NKF7 163 aa22.7■■□□□ 1.22
COL9A3-214ENST00000490398 USP17L8P0C7I0 530 aa22.7■■□□□ 1.22
COL9A3-214ENST00000490398 METTL24Q5JXM2 366 aa22.7■■□□□ 1.22
COL9A3-214ENST00000490398 CST9Q5W186 159 aa22.7■■□□□ 1.22
COL9A3-214ENST00000490398 TTLL5Q6EMB2 1281 aa22.7■■□□□ 1.22
COL9A3-214ENST00000490398 ATG9AQ7Z3C6 839 aa22.7■■□□□ 1.22
COL9A3-214ENST00000490398 CERS5Q8N5B7 392 aa22.7■■□□□ 1.22
COL9A3-214ENST00000490398 ZC3H15Q8WU90 426 aaKnown RBP22.7■■□□□ 1.22
COL9A3-214ENST00000490398 PA2G4Q9UQ80 394 aaKnown RBP22.7■■□□□ 1.22
COL9A3-214ENST00000490398 MROH5Q6ZUA9 1318 aa22.7■■□□□ 1.22
COL9A3-214ENST00000490398 RLBP1P12271 317 aa22.69■■□□□ 1.22
COL9A3-214ENST00000490398 IL1R1P14778 569 aa22.69■■□□□ 1.22
COL9A3-214ENST00000490398 UBE4AQ14139 1066 aa22.69■■□□□ 1.22
COL9A3-214ENST00000490398 USP48Q86UV5 1035 aa22.69■■□□□ 1.22
COL9A3-214ENST00000490398 FAM84BQ96KN1 310 aaPredicted RBP22.69■■□□□ 1.22
COL9A3-214ENST00000490398 EYA2O00167 538 aa22.68■■□□□ 1.22
COL9A3-214ENST00000490398 PDE8BO95263 885 aa22.68■■□□□ 1.22
COL9A3-214ENST00000490398 SIL1Q9H173 461 aa22.68■■□□□ 1.22
COL9A3-214ENST00000490398 MYOZ2Q9NPC6 264 aa22.68■■□□□ 1.22
COL9A3-214ENST00000490398 ADM5C9JUS6 153 aa22.67■■□□□ 1.22
COL9A3-214ENST00000490398 ZNF804AQ7Z570 1209 aa22.67■■□□□ 1.22
COL9A3-214ENST00000490398 SCAF8Q9UPN6 1271 aaKnown RBP22.67■■□□□ 1.22
COL9A3-214ENST00000490398 SCARF1Q14162 830 aa22.66■■□□□ 1.22
COL9A3-214ENST00000490398 KIAA0825Q8IV33 1275 aa22.66■■□□□ 1.22
COL9A3-214ENST00000490398 GNAI3P08754 354 aa22.65■■□□□ 1.22
COL9A3-214ENST00000490398 FGFR2P21802 821 aa22.65■■□□□ 1.22
COL9A3-214ENST00000490398 NBPF9Q3BBW0 867 aa22.65■■□□□ 1.22
COL9A3-214ENST00000490398 CDC37L1Q7L3B6 337 aa22.65■■□□□ 1.22
COL9A3-214ENST00000490398 JMYQ8N9B5 988 aa22.65■■□□□ 1.22
COL9A3-214ENST00000490398 TDRD7Q8NHU6 1098 aaKnown RBP22.65■■□□□ 1.22
COL9A3-214ENST00000490398 GGA3Q9NZ52 723 aa22.65■■□□□ 1.22
COL9A3-214ENST00000490398 IQSEC3Q9UPP2 1182 aaPredicted RBP22.65■■□□□ 1.22
COL9A3-214ENST00000490398 HIBADHP31937 336 aaKnown RBP22.64■■□□□ 1.21
COL9A3-214ENST00000490398 FBXO33Q7Z6M2 555 aa22.64■■□□□ 1.21
COL9A3-214ENST00000490398 PCDHAC2Q9Y5I4 1007 aa22.64■■□□□ 1.21
COL9A3-214ENST00000490398 CNTNAP1P78357 1384 aa22.63■■□□□ 1.21
COL9A3-214ENST00000490398 MYO3BQ8WXR4 1341 aa22.63■■□□□ 1.21
COL9A3-214ENST00000490398 CELF2O95319 508 aaKnown RBP22.63■■□□□ 1.21
COL9A3-214ENST00000490398 ANGEL2Q5VTE6 544 aaKnown RBP22.63■■□□□ 1.21
COL9A3-214ENST00000490398 KRT26Q7Z3Y9 468 aa22.63■■□□□ 1.21
COL9A3-214ENST00000490398 ZNF408Q9H9D4 720 aa22.63■■□□□ 1.21
COL9A3-214ENST00000490398 F8W031 263 aaPredicted RBP22.62■■□□□ 1.21
COL9A3-214ENST00000490398 SRGAP3O43295 1099 aa22.62■■□□□ 1.21
COL9A3-214ENST00000490398 SASH1O94885 1247 aa22.62■■□□□ 1.21
COL9A3-214ENST00000490398 GNAI2P04899 355 aa22.62■■□□□ 1.21
COL9A3-214ENST00000490398 BCAMP50895 628 aa22.62■■□□□ 1.21
COL9A3-214ENST00000490398 DZIP1LQ8IYY4 767 aaKnown RBP22.62■■□□□ 1.21
COL9A3-214ENST00000490398 PANK1Q8TE04 598 aa22.62■■□□□ 1.21
COL9A3-214ENST00000490398 C1orf115Q9H7X2 142 aa22.62■■□□□ 1.21
COL9A3-214ENST00000490398 COPRSQ9NQ92 184 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms