RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 PLCH1Q4KWH8 1693 aa9.19□□□□□ -0.94
PRPF40A-210ENST00000489741 DISP2A7MBM2 1401 aa9.18□□□□□ -0.94
PRPF40A-210ENST00000489741 CDK2AP1O14519 115 aa9.18□□□□□ -0.94
PRPF40A-210ENST00000489741 CPDO75976 1380 aa9.18□□□□□ -0.94
PRPF40A-210ENST00000489741 GCP02774 474 aa9.18□□□□□ -0.94
PRPF40A-210ENST00000489741 MSX1P28360 303 aa9.18□□□□□ -0.94
PRPF40A-210ENST00000489741 COL14A1Q05707 1796 aaKnown RBP9.18□□□□□ -0.94
PRPF40A-210ENST00000489741 MTFR1Q15390 333 aa9.18□□□□□ -0.94
PRPF40A-210ENST00000489741 CCDC102BQ68D86 513 aa9.18□□□□□ -0.94
PRPF40A-210ENST00000489741 NRAPQ86VF7 1730 aa9.18□□□□□ -0.94
PRPF40A-210ENST00000489741 AIDAQ96BJ3 306 aa9.18□□□□□ -0.94
PRPF40A-210ENST00000489741 ZNF594Q96JF6 807 aaPredicted RBP9.18□□□□□ -0.94
PRPF40A-210ENST00000489741 CAMKK2Q96RR4 588 aa9.18□□□□□ -0.94
PRPF40A-210ENST00000489741 CABP1Q9NZU7 370 aa9.18□□□□□ -0.94
PRPF40A-210ENST00000489741 KIAA1024Q9UPX6 916 aa9.18□□□□□ -0.94
PRPF40A-210ENST00000489741 BRD4O60885 1362 aaPredicted RBP9.17□□□□□ -0.94
PRPF40A-210ENST00000489741 CENPJQ9HC77 1338 aaPredicted RBP9.17□□□□□ -0.94
PRPF40A-210ENST00000489741 FAM196AQ6ZSG2 479 aa9.17□□□□□ -0.94
PRPF40A-210ENST00000489741 ABTB2Q8N961 1025 aa9.17□□□□□ -0.94
PRPF40A-210ENST00000489741 RUBCNLQ9H714 662 aa9.17□□□□□ -0.94
PRPF40A-210ENST00000489741 CRYBG1Q9Y4K1 1723 aa9.17□□□□□ -0.94
PRPF40A-210ENST00000489741 RASA1P20936 1047 aa9.16□□□□□ -0.94
PRPF40A-210ENST00000489741 LORP23490 312 aaPredicted RBP9.16□□□□□ -0.94
PRPF40A-210ENST00000489741 GAS6Q14393 721 aa9.16□□□□□ -0.94
PRPF40A-210ENST00000489741 LARP1Q6PKG0 1096 aaKnown RBP9.16□□□□□ -0.94
PRPF40A-210ENST00000489741 NLRP13Q86W25 1043 aa9.16□□□□□ -0.94
PRPF40A-210ENST00000489741 LARGE2Q8N3Y3 721 aa9.16□□□□□ -0.94
PRPF40A-210ENST00000489741 L3MBTL2Q969R5 705 aa9.16□□□□□ -0.94
PRPF40A-210ENST00000489741 STRN4Q9NRL3 753 aa9.16□□□□□ -0.94
PRPF40A-210ENST00000489741 IQSEC3Q9UPP2 1182 aaPredicted RBP9.16□□□□□ -0.94
PRPF40A-210ENST00000489741 GTF3C3Q9Y5Q9 886 aa9.16□□□□□ -0.94
PRPF40A-210ENST00000489741 USP3Q9Y6I4 520 aa9.16□□□□□ -0.94
PRPF40A-210ENST00000489741 ARHGEF28Q8N1W1 1705 aaKnown RBP9.16□□□□□ -0.94
PRPF40A-210ENST00000489741 THSD7AQ9UPZ6 1657 aa9.16□□□□□ -0.94
PRPF40A-210ENST00000489741 SSH2Q76I76 1423 aa9.15□□□□□ -0.94
PRPF40A-210ENST00000489741 ZBTB7BO15156 539 aaPredicted RBP9.15□□□□□ -0.94
PRPF40A-210ENST00000489741 EVA1CP58658 441 aa9.15□□□□□ -0.94
PRPF40A-210ENST00000489741 SRPK2P78362 688 aaKnown RBP9.15□□□□□ -0.94
PRPF40A-210ENST00000489741 EZH2Q15910 746 aaKnown RBP9.15□□□□□ -0.94
PRPF40A-210ENST00000489741 EFHC2Q5JST6 749 aa9.15□□□□□ -0.94
PRPF40A-210ENST00000489741 TNS4Q8IZW8 715 aa9.15□□□□□ -0.94
PRPF40A-210ENST00000489741 TCP11L2Q8N4U5 519 aa9.15□□□□□ -0.94
PRPF40A-210ENST00000489741 SCHIP1Q9P0W5 487 aaPredicted RBP9.15□□□□□ -0.94
PRPF40A-210ENST00000489741 THRAP3Q9Y2W1 955 aaKnown RBP9.15□□□□□ -0.94
PRPF40A-210ENST00000489741 CAMTA1Q9Y6Y1 1673 aa9.15□□□□□ -0.94
PRPF40A-210ENST00000489741 PPIP5K1Q6PFW1 1433 aa9.14□□□□□ -0.95
PRPF40A-210ENST00000489741 TRIM37O94972 964 aa9.14□□□□□ -0.95
PRPF40A-210ENST00000489741 LMOD1P29536 600 aaPredicted RBP9.14□□□□□ -0.95
PRPF40A-210ENST00000489741 LBRQ14739 615 aaKnown RBP9.14□□□□□ -0.95
PRPF40A-210ENST00000489741 KIAA1210Q9ULL0 1709 aa9.14□□□□□ -0.95
PRPF40A-210ENST00000489741 TATP17735 454 aaPredicted RBP9.13□□□□□ -0.95
PRPF40A-210ENST00000489741 R3HDM1Q15032 1099 aaKnown RBP9.13□□□□□ -0.95
PRPF40A-210ENST00000489741 SLC9A9Q8IVB4 645 aa9.13□□□□□ -0.95
PRPF40A-210ENST00000489741 ZNF295-AS1Q8N0V1 137 aa9.13□□□□□ -0.95
PRPF40A-210ENST00000489741 SIX5Q8N196 739 aa9.13□□□□□ -0.95
PRPF40A-210ENST00000489741 C1orf216Q8TAB5 229 aa9.13□□□□□ -0.95
PRPF40A-210ENST00000489741 SIN3AQ96ST3 1273 aa9.13□□□□□ -0.95
PRPF40A-210ENST00000489741 MBIPQ9NS73 344 aa9.13□□□□□ -0.95
PRPF40A-210ENST00000489741 USP35Q9P2H5 1018 aa9.13□□□□□ -0.95
PRPF40A-210ENST00000489741 PARP3Q9Y6F1 533 aa9.13□□□□□ -0.95
PRPF40A-210ENST00000489741 AATKQ6ZMQ8 1374 aa9.12□□□□□ -0.95
PRPF40A-210ENST00000489741 SFI1A8K8P3 1242 aa9.12□□□□□ -0.95
PRPF40A-210ENST00000489741 APBA3O96018 575 aa9.12□□□□□ -0.95
PRPF40A-210ENST00000489741 ATP4AP20648 1035 aa9.12□□□□□ -0.95
PRPF40A-210ENST00000489741 EPHA4P54764 986 aa9.12□□□□□ -0.95
PRPF40A-210ENST00000489741 SRSF11Q05519 484 aaKnown RBP9.12□□□□□ -0.95
PRPF40A-210ENST00000489741 PDE3BQ13370 1112 aa9.12□□□□□ -0.95
PRPF40A-210ENST00000489741 ARSJQ5FYB0 599 aaPredicted RBP9.12□□□□□ -0.95
PRPF40A-210ENST00000489741 TBCELQ5QJ74 424 aa9.12□□□□□ -0.95
PRPF40A-210ENST00000489741 SVOPQ8N4V2 548 aa9.12□□□□□ -0.95
PRPF40A-210ENST00000489741 ZMYND15Q9H091 742 aa9.12□□□□□ -0.95
PRPF40A-210ENST00000489741 CRISPLD1Q9H336 500 aa9.12□□□□□ -0.95
PRPF40A-210ENST00000489741 ZNF232Q9UNY5 417 aa9.12□□□□□ -0.95
PRPF40A-210ENST00000489741 TOPAZ1Q8N9V7 1692 aa9.12□□□□□ -0.95
PRPF40A-210ENST00000489741 USP6P35125 1406 aa9.12□□□□□ -0.95
PRPF40A-210ENST00000489741 PARD3Q8TEW0 1356 aa9.12□□□□□ -0.95
PRPF40A-210ENST00000489741 EVC2Q86UK5 1308 aa9.11□□□□□ -0.95
PRPF40A-210ENST00000489741 THBS1P07996 1170 aa9.11□□□□□ -0.95
PRPF40A-210ENST00000489741 SLURP2P0DP57 97 aa9.11□□□□□ -0.95
PRPF40A-210ENST00000489741 FOXK2Q01167 660 aa9.11□□□□□ -0.95
PRPF40A-210ENST00000489741 ARHGEF25Q86VW2 580 aa9.11□□□□□ -0.95
PRPF40A-210ENST00000489741 TSEN2Q8NCE0 465 aaKnown RBP9.11□□□□□ -0.95
PRPF40A-210ENST00000489741 VRTNQ9H8Y1 702 aa9.11□□□□□ -0.95
PRPF40A-210ENST00000489741 PHF24Q9UPV7 400 aa9.11□□□□□ -0.95
PRPF40A-210ENST00000489741 ITSN1Q15811 1721 aa9.11□□□□□ -0.95
PRPF40A-210ENST00000489741 LMO7Q8WWI1 1683 aa9.1□□□□□ -0.95
PRPF40A-210ENST00000489741 TTC21BQ7Z4L5 1316 aa9.1□□□□□ -0.95
PRPF40A-210ENST00000489741 COL5A2P05997 1499 aaPredicted RBP9.1□□□□□ -0.95
PRPF40A-210ENST00000489741 PHRF1Q9P1Y6 1649 aaKnown RBP9.1□□□□□ -0.95
PRPF40A-210ENST00000489741 MX2P20592 715 aa9.1□□□□□ -0.95
PRPF40A-210ENST00000489741 ZDHHC3Q9NYG2 299 aa9.1□□□□□ -0.95
PRPF40A-210ENST00000489741 NSFL1CQ9UNZ2 370 aaKnown RBP9.1□□□□□ -0.95
PRPF40A-210ENST00000489741 CHMP3Q9Y3E7 222 aa9.1□□□□□ -0.95
PRPF40A-210ENST00000489741 NRKQ7Z2Y5 1582 aa9.1□□□□□ -0.95
PRPF40A-210ENST00000489741 LRP5O75197 1615 aa9.09□□□□□ -0.95
PRPF40A-210ENST00000489741 CRB1P82279 1406 aa9.09□□□□□ -0.95
PRPF40A-210ENST00000489741 M0R2N6 131 aa9.09□□□□□ -0.95
PRPF40A-210ENST00000489741 SEC13P55735 322 aa9.09□□□□□ -0.95
PRPF40A-210ENST00000489741 TEAD4Q15561 434 aa9.09□□□□□ -0.95
PRPF40A-210ENST00000489741 CRTC2Q53ET0 693 aaPredicted RBP9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms