RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 SAMD7Q7Z3H4 446 aa17.49■□□□□ 0.39
SYNE1-226ENST00000488376 CNNM1Q9NRU3 951 aa17.49■□□□□ 0.39
SYNE1-226ENST00000488376 KCNJ4P48050 445 aa17.48■□□□□ 0.39
SYNE1-226ENST00000488376 RFX5P48382 616 aaPredicted RBP17.48■□□□□ 0.39
SYNE1-226ENST00000488376 ATF7IPQ6VMQ6 1270 aa17.48■□□□□ 0.39
SYNE1-226ENST00000488376 USP50Q70EL3 339 aaPredicted RBP17.48■□□□□ 0.39
SYNE1-226ENST00000488376 CNTROBQ8N137 903 aa17.48■□□□□ 0.39
SYNE1-226ENST00000488376 RIPOR2Q9Y4F9 1068 aa17.48■□□□□ 0.39
SYNE1-226ENST00000488376 LRRFIP2Q9Y608 721 aaKnown RBP17.48■□□□□ 0.39
SYNE1-226ENST00000488376 UBTFL1P0CB47 393 aaPredicted RBP17.47■□□□□ 0.39
SYNE1-226ENST00000488376 TBC1D10BQ4KMP7 808 aaPredicted RBP17.47■□□□□ 0.39
SYNE1-226ENST00000488376 PODNQ7Z5L7 613 aa17.47■□□□□ 0.39
SYNE1-226ENST00000488376 DPF2Q92785 391 aa17.47■□□□□ 0.39
SYNE1-226ENST00000488376 ZNF646O15015 1829 aaPredicted RBP17.47■□□□□ 0.39
SYNE1-226ENST00000488376 USP17L3A6NCW0 530 aa17.46■□□□□ 0.39
SYNE1-226ENST00000488376 USP17L4A6NCW7 530 aa17.46■□□□□ 0.39
SYNE1-226ENST00000488376 TRAF5O00463 557 aa17.46■□□□□ 0.39
SYNE1-226ENST00000488376 RSBN1LQ6PCB5 846 aaPredicted RBP17.46■□□□□ 0.39
SYNE1-226ENST00000488376 DLK2Q6UY11 383 aa17.46■□□□□ 0.39
SYNE1-226ENST00000488376 USP17L1Q7RTZ2 530 aa17.46■□□□□ 0.39
SYNE1-226ENST00000488376 GMLQ99445 158 aa17.46■□□□□ 0.39
SYNE1-226ENST00000488376 COA1Q9GZY4 146 aa17.46■□□□□ 0.39
SYNE1-226ENST00000488376 ASTN2O75129 1339 aaPredicted RBP17.46■□□□□ 0.38
SYNE1-226ENST00000488376 H7C1D1 291 aa17.45■□□□□ 0.38
SYNE1-226ENST00000488376 RPS12P25398 132 aaKnown RBP17.45■□□□□ 0.38
SYNE1-226ENST00000488376 DACT2Q5SW24 774 aa17.45■□□□□ 0.38
SYNE1-226ENST00000488376 RBM26Q5T8P6 1007 aaKnown RBP17.45■□□□□ 0.38
SYNE1-226ENST00000488376 FBXW7Q969H0 707 aa17.45■□□□□ 0.38
SYNE1-226ENST00000488376 IPO8O15397 1037 aaKnown RBP17.44■□□□□ 0.38
SYNE1-226ENST00000488376 RLBP1P12271 317 aa17.44■□□□□ 0.38
SYNE1-226ENST00000488376 C15orf52Q6ZUT6 534 aaKnown RBP17.44■□□□□ 0.38
SYNE1-226ENST00000488376 TMEM57Q8N5G2 664 aa17.44■□□□□ 0.38
SYNE1-226ENST00000488376 VGLL2Q8N8G2 317 aa17.44■□□□□ 0.38
SYNE1-226ENST00000488376 CD209Q9NNX6 404 aa17.44■□□□□ 0.38
SYNE1-226ENST00000488376 PTPN12Q05209 780 aaKnown RBP17.43■□□□□ 0.38
SYNE1-226ENST00000488376 ZKSCAN2Q63HK3 967 aa17.43■□□□□ 0.38
SYNE1-226ENST00000488376 GLIS2Q9BZE0 524 aaPredicted RBP17.43■□□□□ 0.38
SYNE1-226ENST00000488376 PGAP2Q9UHJ9 254 aa17.43■□□□□ 0.38
SYNE1-226ENST00000488376 JAG2Q9Y219 1238 aa17.43■□□□□ 0.38
SYNE1-226ENST00000488376 ZNF609O15014 1411 aa17.43■□□□□ 0.38
SYNE1-226ENST00000488376 PSME4Q14997 1843 aa17.42■□□□□ 0.38
SYNE1-226ENST00000488376 GYG1P46976 350 aa17.42■□□□□ 0.38
SYNE1-226ENST00000488376 ZNF280AP59817 542 aaPredicted RBP17.42■□□□□ 0.38
SYNE1-226ENST00000488376 GTF2IP78347 998 aa17.42■□□□□ 0.38
SYNE1-226ENST00000488376 METTL24Q5JXM2 366 aa17.42■□□□□ 0.38
SYNE1-226ENST00000488376 AGBL3Q8NEM8 1001 aa17.42■□□□□ 0.38
SYNE1-226ENST00000488376 SIL1Q9H173 461 aa17.42■□□□□ 0.38
SYNE1-226ENST00000488376 PA2G4Q9UQ80 394 aaKnown RBP17.42■□□□□ 0.38
SYNE1-226ENST00000488376 MROH5Q6ZUA9 1318 aa17.42■□□□□ 0.38
SYNE1-226ENST00000488376 KIF4BQ2VIQ3 1234 aa17.41■□□□□ 0.38
SYNE1-226ENST00000488376 STRIP1Q5VSL9 837 aa17.41■□□□□ 0.38
SYNE1-226ENST00000488376 ATG9AQ7Z3C6 839 aa17.41■□□□□ 0.38
SYNE1-226ENST00000488376 CERS5Q8N5B7 392 aa17.41■□□□□ 0.38
SYNE1-226ENST00000488376 KLRG1Q96E93 195 aa17.41■□□□□ 0.38
SYNE1-226ENST00000488376 CREBZFQ9NS37 354 aa17.41■□□□□ 0.38
SYNE1-226ENST00000488376 EYA2O00167 538 aa17.4■□□□□ 0.38
SYNE1-226ENST00000488376 USP17L8P0C7I0 530 aa17.4■□□□□ 0.38
SYNE1-226ENST00000488376 IL1R1P14778 569 aa17.4■□□□□ 0.38
SYNE1-226ENST00000488376 UBE4AQ14139 1066 aa17.4■□□□□ 0.38
SYNE1-226ENST00000488376 CST9Q5W186 159 aa17.4■□□□□ 0.38
SYNE1-226ENST00000488376 TTLL5Q6EMB2 1281 aa17.4■□□□□ 0.38
SYNE1-226ENST00000488376 FAM84BQ96KN1 310 aaPredicted RBP17.4■□□□□ 0.38
SYNE1-226ENST00000488376 TMEM88BA6NKF7 163 aa17.39■□□□□ 0.37
SYNE1-226ENST00000488376 GNAI3P08754 354 aa17.39■□□□□ 0.37
SYNE1-226ENST00000488376 ZNF804AQ7Z570 1209 aa17.39■□□□□ 0.37
SYNE1-226ENST00000488376 MKRN1Q9UHC7 482 aaKnown RBP17.39■□□□□ 0.37
SYNE1-226ENST00000488376 SCAF8Q9UPN6 1271 aaKnown RBP17.39■□□□□ 0.37
SYNE1-226ENST00000488376 ADM5C9JUS6 153 aa17.38■□□□□ 0.37
SYNE1-226ENST00000488376 PDE8BO95263 885 aa17.38■□□□□ 0.37
SYNE1-226ENST00000488376 USP48Q86UV5 1035 aa17.38■□□□□ 0.37
SYNE1-226ENST00000488376 KIAA0825Q8IV33 1275 aa17.38■□□□□ 0.37
SYNE1-226ENST00000488376 ZC3H15Q8WU90 426 aaKnown RBP17.38■□□□□ 0.37
SYNE1-226ENST00000488376 MYOZ2Q9NPC6 264 aa17.38■□□□□ 0.37
SYNE1-226ENST00000488376 GGA3Q9NZ52 723 aa17.38■□□□□ 0.37
SYNE1-226ENST00000488376 IQSEC3Q9UPP2 1182 aaPredicted RBP17.38■□□□□ 0.37
SYNE1-226ENST00000488376 FGFR2P21802 821 aa17.37■□□□□ 0.37
SYNE1-226ENST00000488376 SCARF1Q14162 830 aa17.37■□□□□ 0.37
SYNE1-226ENST00000488376 DZIP1LQ8IYY4 767 aaKnown RBP17.37■□□□□ 0.37
SYNE1-226ENST00000488376 PANK1Q8TE04 598 aa17.37■□□□□ 0.37
SYNE1-226ENST00000488376 C1orf115Q9H7X2 142 aa17.37■□□□□ 0.37
SYNE1-226ENST00000488376 PCDHAC2Q9Y5I4 1007 aa17.37■□□□□ 0.37
SYNE1-226ENST00000488376 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.37■□□□□ 0.37
SYNE1-226ENST00000488376 PNMA6EA0A0J9YXQ4 647 aa17.36■□□□□ 0.37
SYNE1-226ENST00000488376 SRGAP3O43295 1099 aa17.36■□□□□ 0.37
SYNE1-226ENST00000488376 HIBADHP31937 336 aaKnown RBP17.36■□□□□ 0.37
SYNE1-226ENST00000488376 NBPF9Q3BBW0 867 aa17.36■□□□□ 0.37
SYNE1-226ENST00000488376 FBXO33Q7Z6M2 555 aa17.36■□□□□ 0.37
SYNE1-226ENST00000488376 TDRD7Q8NHU6 1098 aaKnown RBP17.36■□□□□ 0.37
SYNE1-226ENST00000488376 F8W031 263 aaPredicted RBP17.35■□□□□ 0.37
SYNE1-226ENST00000488376 SASH1O94885 1247 aa17.35■□□□□ 0.37
SYNE1-226ENST00000488376 GNAI2P04899 355 aa17.35■□□□□ 0.37
SYNE1-226ENST00000488376 BCAMP50895 628 aa17.35■□□□□ 0.37
SYNE1-226ENST00000488376 MTX1Q13505 466 aa17.35■□□□□ 0.37
SYNE1-226ENST00000488376 ANGEL2Q5VTE6 544 aaKnown RBP17.35■□□□□ 0.37
SYNE1-226ENST00000488376 CDC37L1Q7L3B6 337 aa17.35■□□□□ 0.37
SYNE1-226ENST00000488376 KRT26Q7Z3Y9 468 aa17.35■□□□□ 0.37
SYNE1-226ENST00000488376 ITPRIPQ8IWB1 547 aa17.35■□□□□ 0.37
SYNE1-226ENST00000488376 FTSJ3Q8IY81 847 aaKnown RBP17.35■□□□□ 0.37
SYNE1-226ENST00000488376 ZNF408Q9H9D4 720 aa17.35■□□□□ 0.37
SYNE1-226ENST00000488376 MYO3BQ8WXR4 1341 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms