RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 CCDC152Q4G0S7 254 aa12.09□□□□□ -0.47
COL17A1-207ENST00000488320 LDLRAD1Q5T700 205 aa12.09□□□□□ -0.47
COL17A1-207ENST00000488320 APOBEC3FQ8IUX4 373 aaKnown RBP12.09□□□□□ -0.47
COL17A1-207ENST00000488320 CCDC85AQ96PX6 553 aaPredicted RBP12.09□□□□□ -0.47
COL17A1-207ENST00000488320 MXD3Q9BW11 206 aa12.09□□□□□ -0.47
COL17A1-207ENST00000488320 BABAM1Q9NWV8 329 aa12.09□□□□□ -0.47
COL17A1-207ENST00000488320 CHPF2Q9P2E5 772 aa12.09□□□□□ -0.47
COL17A1-207ENST00000488320 FZD1Q9UP38 647 aa12.09□□□□□ -0.47
COL17A1-207ENST00000488320 RBBP6Q7Z6E9 1792 aaKnown RBP12.09□□□□□ -0.47
COL17A1-207ENST00000488320 ZNF609O15014 1411 aa12.09□□□□□ -0.47
COL17A1-207ENST00000488320 PSME4Q14997 1843 aa12.09□□□□□ -0.47
COL17A1-207ENST00000488320 XDHP47989 1333 aa12.09□□□□□ -0.47
COL17A1-207ENST00000488320 COL4A1P02462 1669 aa12.08□□□□□ -0.48
COL17A1-207ENST00000488320 H0YGN5 161 aa12.08□□□□□ -0.48
COL17A1-207ENST00000488320 IGF2BP3O00425 579 aaKnown RBP eCLIP12.08□□□□□ -0.48
COL17A1-207ENST00000488320 PPP1R12BO60237 982 aaPredicted RBP12.08□□□□□ -0.48
COL17A1-207ENST00000488320 SASH1O94885 1247 aa12.08□□□□□ -0.48
COL17A1-207ENST00000488320 ARHGEF6Q15052 776 aa12.08□□□□□ -0.48
COL17A1-207ENST00000488320 ANKRD18AQ8IVF6 992 aa12.08□□□□□ -0.48
COL17A1-207ENST00000488320 CCER1Q8TC90 406 aaPredicted RBP12.08□□□□□ -0.48
COL17A1-207ENST00000488320 LAS1LQ9Y4W2 734 aaKnown RBP12.08□□□□□ -0.48
COL17A1-207ENST00000488320 CENPFP49454 3210 aa12.07□□□□□ -0.48
COL17A1-207ENST00000488320 MYCP01106 439 aaPredicted RBP12.07□□□□□ -0.48
COL17A1-207ENST00000488320 ZBTB48P10074 688 aaPredicted RBP12.07□□□□□ -0.48
COL17A1-207ENST00000488320 CRHR2Q13324 411 aa12.07□□□□□ -0.48
COL17A1-207ENST00000488320 SLC9C1Q4G0N8 1177 aa12.07□□□□□ -0.48
COL17A1-207ENST00000488320 CHRDL2Q6WN34 429 aa12.07□□□□□ -0.48
COL17A1-207ENST00000488320 RIC3Q7Z5B4 369 aa12.07□□□□□ -0.48
COL17A1-207ENST00000488320 ZBTB38Q8NAP3 1195 aaPredicted RBP12.07□□□□□ -0.48
COL17A1-207ENST00000488320 WNK4Q96J92 1243 aa12.07□□□□□ -0.48
COL17A1-207ENST00000488320 MYO3BQ8WXR4 1341 aa12.07□□□□□ -0.48
COL17A1-207ENST00000488320 MMP14P50281 582 aa12.06□□□□□ -0.48
COL17A1-207ENST00000488320 CACNB1Q02641 598 aaPredicted RBP12.06□□□□□ -0.48
COL17A1-207ENST00000488320 TRIM28Q13263 835 aaKnown RBP12.06□□□□□ -0.48
COL17A1-207ENST00000488320 DACT2Q5SW24 774 aa12.06□□□□□ -0.48
COL17A1-207ENST00000488320 HDGFL1Q5TGJ6 251 aa12.06□□□□□ -0.48
COL17A1-207ENST00000488320 STRIP1Q5VSL9 837 aa12.06□□□□□ -0.48
COL17A1-207ENST00000488320 DPF3Q92784 378 aa12.06□□□□□ -0.48
COL17A1-207ENST00000488320 OTUD5Q96G74 571 aa12.06□□□□□ -0.48
COL17A1-207ENST00000488320 ZNF333Q96JL9 665 aa12.06□□□□□ -0.48
COL17A1-207ENST00000488320 PDE8AO60658 829 aa12.05□□□□□ -0.48
COL17A1-207ENST00000488320 KRT24Q2M2I5 525 aa12.05□□□□□ -0.48
COL17A1-207ENST00000488320 TTLL5Q6EMB2 1281 aa12.05□□□□□ -0.48
COL17A1-207ENST00000488320 KIAA0825Q8IV33 1275 aa12.05□□□□□ -0.48
COL17A1-207ENST00000488320 JARID2Q92833 1246 aaPredicted RBP12.05□□□□□ -0.48
COL17A1-207ENST00000488320 CLMNQ96JQ2 1002 aa12.05□□□□□ -0.48
COL17A1-207ENST00000488320 DEFB129Q9H1M3 183 aa12.05□□□□□ -0.48
COL17A1-207ENST00000488320 HYPKQ9NX55 129 aa12.05□□□□□ -0.48
COL17A1-207ENST00000488320 DBF4Q9UBU7 674 aaPredicted RBP12.05□□□□□ -0.48
COL17A1-207ENST00000488320 SZT2Q5T011 3432 aa12.04□□□□□ -0.48
COL17A1-207ENST00000488320 LMOD3Q0VAK6 560 aa12.04□□□□□ -0.48
COL17A1-207ENST00000488320 SUPT20HL1Q3ZLR7 823 aa12.04□□□□□ -0.48
COL17A1-207ENST00000488320 COA1Q9GZY4 146 aa12.04□□□□□ -0.48
COL17A1-207ENST00000488320 BRCA2P51587 3418 aa12.04□□□□□ -0.48
COL17A1-207ENST00000488320 WTIPA6NIX2 430 aaPredicted RBP12.03□□□□□ -0.48
COL17A1-207ENST00000488320 IREB2P48200 963 aaKnown RBP12.03□□□□□ -0.48
COL17A1-207ENST00000488320 GOLGA2Q08379 1002 aa12.03□□□□□ -0.48
COL17A1-207ENST00000488320 DLGAP5Q15398 846 aa12.03□□□□□ -0.48
COL17A1-207ENST00000488320 MAP3K11Q16584 847 aa12.03□□□□□ -0.48
COL17A1-207ENST00000488320 CDC5LQ99459 802 aaKnown RBP12.03□□□□□ -0.48
COL17A1-207ENST00000488320 MYD88Q99836 296 aa12.03□□□□□ -0.48
COL17A1-207ENST00000488320 RBM27Q9P2N5 1060 aaKnown RBP12.03□□□□□ -0.48
COL17A1-207ENST00000488320 PTCH2Q9Y6C5 1203 aa12.03□□□□□ -0.48
COL17A1-207ENST00000488320 UNCXA6NJT0 531 aa12.02□□□□□ -0.49
COL17A1-207ENST00000488320 CCT4P50991 539 aaKnown RBP12.02□□□□□ -0.49
COL17A1-207ENST00000488320 NEUROD2Q15784 382 aa12.02□□□□□ -0.49
COL17A1-207ENST00000488320 ZFYVE28Q9HCC9 887 aa12.02□□□□□ -0.49
COL17A1-207ENST00000488320 MINPP1Q9UNW1 487 aa12.02□□□□□ -0.49
COL17A1-207ENST00000488320 MED23Q9ULK4 1368 aa12.02□□□□□ -0.49
COL17A1-207ENST00000488320 TRIOBPQ9H2D6 2365 aa12.01□□□□□ -0.49
COL17A1-207ENST00000488320 HTTP42858 3142 aa12.01□□□□□ -0.49
COL17A1-207ENST00000488320 MYO1BO43795 1136 aa12.01□□□□□ -0.49
COL17A1-207ENST00000488320 PCCAP05165 728 aaPredicted RBP12.01□□□□□ -0.49
COL17A1-207ENST00000488320 TMPOP42166 694 aaKnown RBP12.01□□□□□ -0.49
COL17A1-207ENST00000488320 GTF2IP78347 998 aa12.01□□□□□ -0.49
COL17A1-207ENST00000488320 ANKRD13AQ8IZ07 590 aa12.01□□□□□ -0.49
COL17A1-207ENST00000488320 SH3TC2Q8TF17 1288 aa12.01□□□□□ -0.49
COL17A1-207ENST00000488320 PTPN18Q99952 460 aa12.01□□□□□ -0.49
COL17A1-207ENST00000488320 VEZTQ9HBM0 779 aa12.01□□□□□ -0.49
COL17A1-207ENST00000488320 PPP2R3BQ9Y5P8 575 aa12.01□□□□□ -0.49
COL17A1-207ENST00000488320 CHL1O00533 1208 aa12□□□□□ -0.49
COL17A1-207ENST00000488320 USP2O75604 605 aaPredicted RBP12□□□□□ -0.49
COL17A1-207ENST00000488320 WDHD1O75717 1129 aaPredicted RBP12□□□□□ -0.49
COL17A1-207ENST00000488320 GJA5P36382 358 aa12□□□□□ -0.49
COL17A1-207ENST00000488320 CAP1Q01518 475 aa12□□□□□ -0.49
COL17A1-207ENST00000488320 KIF22Q14807 665 aa12□□□□□ -0.49
COL17A1-207ENST00000488320 TAF1CQ15572 869 aaPredicted RBP12□□□□□ -0.49
COL17A1-207ENST00000488320 NBPF12Q5TAG4 269 aaPredicted RBP12□□□□□ -0.49
COL17A1-207ENST00000488320 CCDC191Q8NCU4 936 aa12□□□□□ -0.49
COL17A1-207ENST00000488320 OPTNQ96CV9 577 aa12□□□□□ -0.49
COL17A1-207ENST00000488320 ELP3Q9H9T3 547 aa12□□□□□ -0.49
COL17A1-207ENST00000488320 BSDC1Q9NW68 430 aaPredicted RBP12□□□□□ -0.49
COL17A1-207ENST00000488320 CWC25Q9NXE8 425 aaPredicted RBP12□□□□□ -0.49
COL17A1-207ENST00000488320 LEMD3Q9Y2U8 911 aa12□□□□□ -0.49
COL17A1-207ENST00000488320 COL1A1P02452 1464 aaPredicted RBP12□□□□□ -0.49
COL17A1-207ENST00000488320 CLRN2A0PK11 232 aa11.99□□□□□ -0.49
COL17A1-207ENST00000488320 TESPA1A2RU30 521 aaPredicted RBP11.99□□□□□ -0.49
COL17A1-207ENST00000488320 F8W031 263 aaPredicted RBP11.99□□□□□ -0.49
COL17A1-207ENST00000488320 HOXB7P09629 217 aa11.99□□□□□ -0.49
COL17A1-207ENST00000488320 TXNRD3Q86VQ6 643 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms