RNA–Protein interactions for RNA: ENST00000487620.1

ZNF3-215, Transcript of zinc finger protein 3, human

TSL 2

Gene ZNF3, Length 2,660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF3-215	ENST00000487620	PHRF1	Q9P1Y6	1649 aa	Known RBP	11.45	□□□□□ -0.58
ZNF3-215	ENST00000487620		A0A087WZG4	1122 aa		11.45	□□□□□ -0.58
ZNF3-215	ENST00000487620		A0A0G2JLW4	131 aa		11.45	□□□□□ -0.58
ZNF3-215	ENST00000487620	NEMF	O60524	1076 aa		11.45	□□□□□ -0.58
ZNF3-215	ENST00000487620	ZNF396	Q96N95	335 aa	Predicted RBP	11.45	□□□□□ -0.58
ZNF3-215	ENST00000487620	FER1L4	A9Z1Z3	1794 aa		11.45	□□□□□ -0.58
ZNF3-215	ENST00000487620	RGPD5	Q99666	1765 aa		11.45	□□□□□ -0.58
ZNF3-215	ENST00000487620	CEP57L1	Q8IYX8	460 aa		11.44	□□□□□ -0.58
ZNF3-215	ENST00000487620	KBTBD3	Q8NAB2	608 aa		11.44	□□□□□ -0.58
ZNF3-215	ENST00000487620	ZNF496	Q96IT1	587 aa	Predicted RBP	11.44	□□□□□ -0.58
ZNF3-215	ENST00000487620	ORAI2	Q96SN7	254 aa		11.44	□□□□□ -0.58
ZNF3-215	ENST00000487620	SLC52A2	Q9HAB3	445 aa		11.44	□□□□□ -0.58
ZNF3-215	ENST00000487620	RBM6	P78332	1123 aa	Known RBP	11.44	□□□□□ -0.58
ZNF3-215	ENST00000487620	SDF4	Q9BRK5	362 aa		11.44	□□□□□ -0.58
ZNF3-215	ENST00000487620	CCZ1B	P86790	482 aa		11.43	□□□□□ -0.58
ZNF3-215	ENST00000487620	CCZ1	P86791	482 aa	Predicted RBP	11.43	□□□□□ -0.58
ZNF3-215	ENST00000487620	ENGASE	Q8NFI3	743 aa		11.43	□□□□□ -0.58
ZNF3-215	ENST00000487620	RAPGEF4	Q8WZA2	1011 aa		11.43	□□□□□ -0.58
ZNF3-215	ENST00000487620	ZNF215	Q9UL58	517 aa	Predicted RBP	11.43	□□□□□ -0.58
ZNF3-215	ENST00000487620	RFX7	Q2KHR2	1363 aa		11.43	□□□□□ -0.58
ZNF3-215	ENST00000487620		A0A1B0GVL5	298 aa		11.43	□□□□□ -0.58
ZNF3-215	ENST00000487620		E7EWF7	191 aa		11.43	□□□□□ -0.58
ZNF3-215	ENST00000487620	ZRSR1	Q15695	479 aa	Known RBP	11.43	□□□□□ -0.58
ZNF3-215	ENST00000487620	LMBR1L	Q6UX01	489 aa		11.43	□□□□□ -0.58
ZNF3-215	ENST00000487620	NAT10	Q9H0A0	1025 aa	Known RBP	11.43	□□□□□ -0.58
ZNF3-215	ENST00000487620	PAG1	Q9NWQ8	432 aa		11.43	□□□□□ -0.58
ZNF3-215	ENST00000487620	SH3TC1	Q8TE82	1336 aa		11.43	□□□□□ -0.58
ZNF3-215	ENST00000487620	ZC3H6	P61129	1189 aa	Known RBP	11.43	□□□□□ -0.58
ZNF3-215	ENST00000487620	TIMM10	P62072	90 aa		11.43	□□□□□ -0.58
ZNF3-215	ENST00000487620	NYAP1	Q6ZVC0	841 aa		11.43	□□□□□ -0.58
ZNF3-215	ENST00000487620	ILDR1	Q86SU0	546 aa	Predicted RBP	11.43	□□□□□ -0.58
ZNF3-215	ENST00000487620	TTC5	Q8N0Z6	440 aa		11.43	□□□□□ -0.58
ZNF3-215	ENST00000487620	PCDHA7	Q9UN72	937 aa		11.43	□□□□□ -0.58
ZNF3-215	ENST00000487620	KIF20A	O95235	890 aa		11.42	□□□□□ -0.58
ZNF3-215	ENST00000487620	PDIA3	P30101	505 aa	Known RBP	11.42	□□□□□ -0.58
ZNF3-215	ENST00000487620	EXOSC10	Q01780	885 aa	Known RBP	11.42	□□□□□ -0.58
ZNF3-215	ENST00000487620	RABL6	Q3YEC7	729 aa	Predicted RBP	11.42	□□□□□ -0.58
ZNF3-215	ENST00000487620	MRPS27	Q92552	414 aa	Known RBP	11.42	□□□□□ -0.58
ZNF3-215	ENST00000487620	NLRP2	Q9NX02	1062 aa		11.42	□□□□□ -0.58
ZNF3-215	ENST00000487620	CARMIL3	Q8ND23	1372 aa		11.42	□□□□□ -0.58
ZNF3-215	ENST00000487620	HSPD1	P10809	573 aa	Known RBP	11.42	□□□□□ -0.58
ZNF3-215	ENST00000487620	SF3A1	Q15459	793 aa	Known RBP	11.42	□□□□□ -0.58
ZNF3-215	ENST00000487620	OTUD7B	Q6GQQ9	843 aa		11.42	□□□□□ -0.58
ZNF3-215	ENST00000487620	ZNF771	Q7L3S4	317 aa	Predicted RBP	11.42	□□□□□ -0.58
ZNF3-215	ENST00000487620	CCAR2	Q8N163	923 aa	Known RBP	11.42	□□□□□ -0.58
ZNF3-215	ENST00000487620	DSCC1	Q9BVC3	393 aa		11.42	□□□□□ -0.58
ZNF3-215	ENST00000487620	DDX41	Q9UJV9	622 aa	Known RBP	11.42	□□□□□ -0.58
ZNF3-215	ENST00000487620	SCN11A	Q9UI33	1791 aa		11.41	□□□□□ -0.58
ZNF3-215	ENST00000487620	NPHP1	O15259	732 aa		11.41	□□□□□ -0.58
ZNF3-215	ENST00000487620	SMC2	O95347	1197 aa		11.41	□□□□□ -0.58
ZNF3-215	ENST00000487620	POLR3D	P05423	398 aa	Predicted RBP	11.41	□□□□□ -0.58
ZNF3-215	ENST00000487620	NDUFA8	P51970	172 aa		11.41	□□□□□ -0.58
ZNF3-215	ENST00000487620	ATL3	Q6DD88	541 aa		11.41	□□□□□ -0.58
ZNF3-215	ENST00000487620	KIF18A	Q8NI77	898 aa		11.41	□□□□□ -0.58
ZNF3-215	ENST00000487620	FMNL2	Q96PY5	1086 aa		11.41	□□□□□ -0.58
ZNF3-215	ENST00000487620	HELLS	Q9NRZ9	838 aa		11.41	□□□□□ -0.58
ZNF3-215	ENST00000487620	KDM6A	O15550	1401 aa	Predicted RBP	11.41	□□□□□ -0.58
ZNF3-215	ENST00000487620	SALL1	Q9NSC2	1324 aa		11.41	□□□□□ -0.58
ZNF3-215	ENST00000487620	BIN1	O00499	593 aa		11.41	□□□□□ -0.58
ZNF3-215	ENST00000487620	SNRPA1	P09661	255 aa	Known RBP	11.41	□□□□□ -0.58
ZNF3-215	ENST00000487620	STK38	Q15208	465 aa		11.41	□□□□□ -0.58
ZNF3-215	ENST00000487620	DPCR1	Q3MIW9	517 aa		11.41	□□□□□ -0.58
ZNF3-215	ENST00000487620	TTLL5	Q6EMB2	1281 aa		11.41	□□□□□ -0.58
ZNF3-215	ENST00000487620	FMR1NB	Q8N0W7	255 aa	Predicted RBP	11.41	□□□□□ -0.58
ZNF3-215	ENST00000487620	ARFGEF2	Q9Y6D5	1785 aa		11.4	□□□□□ -0.58
ZNF3-215	ENST00000487620	PALLD	Q8WX93	1383 aa		11.4	□□□□□ -0.58
ZNF3-215	ENST00000487620	ERBB3	P21860	1342 aa		11.4	□□□□□ -0.58
ZNF3-215	ENST00000487620	ELF2	Q15723	593 aa		11.4	□□□□□ -0.58
ZNF3-215	ENST00000487620	KMT5B	Q4FZB7	885 aa		11.4	□□□□□ -0.58
ZNF3-215	ENST00000487620	LRP10	Q7Z4F1	713 aa		11.4	□□□□□ -0.58
ZNF3-215	ENST00000487620	NBPF11	Q86T75	865 aa		11.4	□□□□□ -0.58
ZNF3-215	ENST00000487620	SYTL4	Q96C24	671 aa	Predicted RBP	11.4	□□□□□ -0.58
ZNF3-215	ENST00000487620	AGXT2	Q9BYV1	514 aa		11.4	□□□□□ -0.58
ZNF3-215	ENST00000487620	GPHN	Q9NQX3	736 aa	Predicted RBP	11.4	□□□□□ -0.58
ZNF3-215	ENST00000487620	FDPS	P14324	419 aa	Known RBP	11.4	□□□□□ -0.59
ZNF3-215	ENST00000487620	PHKG2	P15735	406 aa		11.4	□□□□□ -0.59
ZNF3-215	ENST00000487620	GSDMD	P57764	484 aa		11.4	□□□□□ -0.59
ZNF3-215	ENST00000487620	ZMYM1	Q5SVZ6	1142 aa		11.4	□□□□□ -0.59
ZNF3-215	ENST00000487620	ADAL	Q6DHV7	355 aa		11.4	□□□□□ -0.59
ZNF3-215	ENST00000487620	ZNF397	Q8NF99	534 aa	Predicted RBP	11.4	□□□□□ -0.59
ZNF3-215	ENST00000487620	ZNF274	Q96GC6	653 aa	Predicted RBP	11.4	□□□□□ -0.59
ZNF3-215	ENST00000487620	TAOK2	Q9UL54	1235 aa		11.4	□□□□□ -0.59
ZNF3-215	ENST00000487620	CLIC4	Q9Y696	253 aa		11.4	□□□□□ -0.59
ZNF3-215	ENST00000487620	ADAMTS7	Q9UKP4	1686 aa		11.4	□□□□□ -0.59
ZNF3-215	ENST00000487620	MAST3	O60307	1309 aa		11.39	□□□□□ -0.59
ZNF3-215	ENST00000487620	IFIT1	P09914	478 aa	Known RBP	11.39	□□□□□ -0.59
ZNF3-215	ENST00000487620	HAND2	P61296	217 aa		11.39	□□□□□ -0.59
ZNF3-215	ENST00000487620	TMC6	Q7Z403	805 aa		11.39	□□□□□ -0.59
ZNF3-215	ENST00000487620	RAB11FIP4	Q86YS3	637 aa		11.39	□□□□□ -0.59
ZNF3-215	ENST00000487620	XPO4	Q9C0E2	1151 aa	Known RBP	11.39	□□□□□ -0.59
ZNF3-215	ENST00000487620	IFNK	Q9P0W0	207 aa		11.39	□□□□□ -0.59
ZNF3-215	ENST00000487620	SLIT3	O75094	1523 aa		11.39	□□□□□ -0.59
ZNF3-215	ENST00000487620	TAT	P17735	454 aa	Predicted RBP	11.39	□□□□□ -0.59
ZNF3-215	ENST00000487620	ATG9A	Q7Z3C6	839 aa		11.39	□□□□□ -0.59
ZNF3-215	ENST00000487620	ERO1A	Q96HE7	468 aa		11.39	□□□□□ -0.59
ZNF3-215	ENST00000487620	RTEL1	Q9NZ71	1219 aa		11.39	□□□□□ -0.59
ZNF3-215	ENST00000487620	KIAA1468	Q9P260	1216 aa		11.39	□□□□□ -0.59
ZNF3-215	ENST00000487620	CAMTA1	Q9Y6Y1	1673 aa		11.39	□□□□□ -0.59
ZNF3-215	ENST00000487620		M0R2C6	588 aa		11.38	□□□□□ -0.59
ZNF3-215	ENST00000487620	SLU7	O95391	586 aa	Known RBP	11.38	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms