RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 FTOQ9C0B1 505 aaKnown RBP eCLIP7.19□□□□□ -1.26
VPS13D-209ENST00000487188 MAP2K2P36507 400 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 TXLNAP40222 546 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 KCNJ6P48051 423 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 DPCR1Q3MIW9 517 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 SSH3Q8TE77 659 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 SMARCC1Q92922 1105 aaPredicted RBP7.19□□□□□ -1.26
VPS13D-209ENST00000487188 C9orf78Q9NZ63 289 aaPredicted RBP7.19□□□□□ -1.26
VPS13D-209ENST00000487188 PPP2R2CQ9Y2T4 447 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 PLEKHG2Q9H7P9 1386 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 ARHGAP6O43182 974 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 RDXP35241 583 aaKnown RBP7.19□□□□□ -1.26
VPS13D-209ENST00000487188 APOBRQ0VD83 1088 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 DNAJC21Q5F1R6 531 aaKnown RBP7.19□□□□□ -1.26
VPS13D-209ENST00000487188 PACS2Q86VP3 889 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 GIMAP7Q8NHV1 300 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 FAM227BQ96M60 508 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 USP28Q96RU2 1077 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 GOLPH3LQ9H4A5 285 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 PLEKHA4Q9H4M7 779 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 KCND1Q9NSA2 647 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 HMG20BQ9P0W2 317 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 KIF5CO60282 957 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 WDHD1O75717 1129 aaPredicted RBP7.18□□□□□ -1.26
VPS13D-209ENST00000487188 RHOXF2BP0C7M4 288 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 GOLGA8FQ08AF8 430 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 GOLGA8DPQ0D2H9 430 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 G3BP1Q13283 466 aaKnown RBP eCLIP7.18□□□□□ -1.26
VPS13D-209ENST00000487188 MMS22LQ6ZRQ5 1243 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 Q6ZUG5 572 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 EFCAB13Q8IY85 973 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 CEP112Q8N8E3 955 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 CNNM3Q8NE01 707 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 RHOXF2Q9BQY4 288 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 LRRC2Q9BYS8 371 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 NUTM2FA1L443 756 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 H3BQF6 201 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 NUTM2GQ5VZR2 741 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 NEK1Q96PY6 1258 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 BAG1Q99933 345 aaPredicted RBP7.18□□□□□ -1.26
VPS13D-209ENST00000487188 PARP3Q9Y6F1 533 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 GIGYF1O75420 1035 aaPredicted RBP7.18□□□□□ -1.26
VPS13D-209ENST00000487188 ATP6V1AP38606 617 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 TDO2P48775 406 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 CCT2P78371 535 aaKnown RBP7.18□□□□□ -1.26
VPS13D-209ENST00000487188 EIF4A2Q14240 407 aaKnown RBP7.18□□□□□ -1.26
VPS13D-209ENST00000487188 AFAP1L1Q8TED9 768 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 FUT8Q9BYC5 575 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 BOLA2Q9H3K6 86 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 CDK12Q9NYV4 1490 aaPredicted RBP7.18□□□□□ -1.26
VPS13D-209ENST00000487188 CDC42BPGQ6DT37 1551 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 ERLIN2O94905 339 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 MYCNP04198 464 aaPredicted RBP7.18□□□□□ -1.26
VPS13D-209ENST00000487188 EIF5P55010 431 aaKnown RBP7.18□□□□□ -1.26
VPS13D-209ENST00000487188 NLRP12P59046 1061 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 NECTIN1Q15223 517 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 HSP90AA4PQ58FG1 418 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 FCHSD1Q86WN1 690 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 ZNF622Q969S3 477 aaKnown RBP eCLIP7.18□□□□□ -1.264e-6■□□□□ 9.9
VPS13D-209ENST00000487188 DHX58Q96C10 678 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 USP44Q9H0E7 712 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 BICC1Q9H694 974 aaKnown RBP7.18□□□□□ -1.26
VPS13D-209ENST00000487188 KIAA1468Q9P260 1216 aa7.18□□□□□ -1.26
VPS13D-209ENST00000487188 IFT172Q9UG01 1749 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 PTPDC1A2A3K4 754 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 AKAP17AQ02040 695 aaKnown RBP7.17□□□□□ -1.26
VPS13D-209ENST00000487188 CT47A1Q5JQC4 288 aaPredicted RBP7.17□□□□□ -1.26
VPS13D-209ENST00000487188 TADA2BQ86TJ2 420 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 REXO1L1PQ8IX06 675 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 IQUBQ8NA54 791 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 FAM71BQ8TC56 605 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 LZTFL1Q9NQ48 299 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 RCOR1Q9UKL0 485 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 ADGRL3Q9HAR2 1447 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 SHTN1A0MZ66 631 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 FOXO3O43524 673 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 KIAA0754O94854 1291 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 LIG3P49916 1009 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 MYL5Q02045 173 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 NFATC2IPQ8NCF5 419 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 CCDC8Q9H0W5 538 aaPredicted RBP7.17□□□□□ -1.26
VPS13D-209ENST00000487188 RNF216Q9NWF9 866 aaPredicted RBP7.17□□□□□ -1.26
VPS13D-209ENST00000487188 ARHGEF28Q8N1W1 1705 aaKnown RBP7.17□□□□□ -1.26
VPS13D-209ENST00000487188 ANKRD26Q9UPS8 1709 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 A0A087WUV0 522 aaPredicted RBP7.17□□□□□ -1.26
VPS13D-209ENST00000487188 CCDC172P0C7W6 258 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 PTPN21Q16825 1174 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 WAPLQ7Z5K2 1190 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 CRACR2AQ9BSW2 395 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 FAM204AQ9H8W3 233 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 MRFAP1Q9Y605 127 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 MAP3K5Q99683 1374 aa7.17□□□□□ -1.26
VPS13D-209ENST00000487188 CTAGE15A4D2H0 777 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 EBAG9O00559 213 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 CCDC175P0C221 793 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 CTAGE8P0CG41 777 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 HSPA2P54652 639 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 CORO7P57737 925 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 ATL3Q6DD88 541 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 NAA16Q6N069 864 aaPredicted RBP7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms