RNA–Protein interactions for RNA: ENST00000486530.1

HPS3-206, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 5

Gene HPS3, Length 1,894 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-206ENST00000486530 NIP7Q9Y221 180 aaKnown RBP eCLIP24.28■■□□□ 1.48
HPS3-206ENST00000486530 RPS6KA4O75676 772 aa24.27■■□□□ 1.48
HPS3-206ENST00000486530 NTSR2O95665 410 aa24.27■■□□□ 1.48
HPS3-206ENST00000486530 CYP21A2P08686 494 aa24.27■■□□□ 1.48
HPS3-206ENST00000486530 CLEC4GQ6UXB4 293 aa24.27■■□□□ 1.48
HPS3-206ENST00000486530 HCLS1P14317 486 aaPredicted RBP24.26■■□□□ 1.47
HPS3-206ENST00000486530 ME3Q16798 604 aa24.26■■□□□ 1.47
HPS3-206ENST00000486530 FOXD4L5Q5VV16 416 aaPredicted RBP24.26■■□□□ 1.47
HPS3-206ENST00000486530 FOXD4L4Q8WXT5 416 aaPredicted RBP24.26■■□□□ 1.47
HPS3-206ENST00000486530 NEK1Q96PY6 1258 aa24.26■■□□□ 1.47
HPS3-206ENST00000486530 TPCN1Q9ULQ1 816 aa24.26■■□□□ 1.47
HPS3-206ENST00000486530 RBM6P78332 1123 aaKnown RBP24.26■■□□□ 1.47
HPS3-206ENST00000486530 SCARF1Q14162 830 aa24.26■■□□□ 1.47
HPS3-206ENST00000486530 ZAP70P43403 619 aa24.25■■□□□ 1.47
HPS3-206ENST00000486530 PUM3Q15397 648 aaKnown RBP24.25■■□□□ 1.47
HPS3-206ENST00000486530 CCDC152Q4G0S7 254 aa24.25■■□□□ 1.47
HPS3-206ENST00000486530 SMIM5Q71RC9 77 aa24.25■■□□□ 1.47
HPS3-206ENST00000486530 FAM177BA6PVY3 158 aa24.24■■□□□ 1.47
HPS3-206ENST00000486530 RGL2O15211 777 aa24.24■■□□□ 1.47
HPS3-206ENST00000486530 HSPD1P10809 573 aaKnown RBP24.24■■□□□ 1.47
HPS3-206ENST00000486530 SLFNL1Q499Z3 407 aa24.24■■□□□ 1.47
HPS3-206ENST00000486530 KRT27Q7Z3Y8 459 aa24.24■■□□□ 1.47
HPS3-206ENST00000486530 CASZ1Q86V15 1759 aa24.24■■□□□ 1.47
HPS3-206ENST00000486530 LY75O60449 1722 aa24.24■■□□□ 1.47
HPS3-206ENST00000486530 TOB2Q14106 344 aaPredicted RBP24.24■■□□□ 1.47
HPS3-206ENST00000486530 FAM196AQ6ZSG2 479 aa24.24■■□□□ 1.47
HPS3-206ENST00000486530 LPIN2Q92539 896 aa24.24■■□□□ 1.47
HPS3-206ENST00000486530 M0R2C6 588 aa24.23■■□□□ 1.47
HPS3-206ENST00000486530 STX6O43752 255 aa24.23■■□□□ 1.47
HPS3-206ENST00000486530 PRPF40AO75400 957 aaKnown RBP24.23■■□□□ 1.47
HPS3-206ENST00000486530 HMGB1P09429 215 aaKnown RBP24.23■■□□□ 1.47
HPS3-206ENST00000486530 MCAMP43121 646 aa24.23■■□□□ 1.47
HPS3-206ENST00000486530 ST3GAL1Q11201 340 aa24.23■■□□□ 1.47
HPS3-206ENST00000486530 COL9A3Q14050 684 aaPredicted RBP24.23■■□□□ 1.47
HPS3-206ENST00000486530 UQCRFS1P1P0C7P4 283 aa24.22■■□□□ 1.47
HPS3-206ENST00000486530 FGFR2P21802 821 aa24.22■■□□□ 1.47
HPS3-206ENST00000486530 GJB2P29033 226 aa24.22■■□□□ 1.47
HPS3-206ENST00000486530 TTF1Q15361 905 aaPredicted RBP24.22■■□□□ 1.47
HPS3-206ENST00000486530 APPBP2Q92624 585 aa24.22■■□□□ 1.47
HPS3-206ENST00000486530 OSBP2Q969R2 916 aa24.22■■□□□ 1.47
HPS3-206ENST00000486530 MPHOSPH8Q99549 860 aa24.22■■□□□ 1.47
HPS3-206ENST00000486530 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.22■■□□□ 1.47
HPS3-206ENST00000486530 BCL2L12Q9HB09 334 aa24.22■■□□□ 1.47
HPS3-206ENST00000486530 ZSCAN22P10073 491 aaPredicted RBP24.21■■□□□ 1.47
HPS3-206ENST00000486530 SYT1P21579 422 aa24.21■■□□□ 1.47
HPS3-206ENST00000486530 ARID4AP29374 1257 aaPredicted RBP24.21■■□□□ 1.47
HPS3-206ENST00000486530 TCEANC2Q96MN5 208 aa24.21■■□□□ 1.47
HPS3-206ENST00000486530 GNPATO15228 680 aa24.21■■□□□ 1.47
HPS3-206ENST00000486530 ZSCAN25Q6NSZ9 544 aa24.21■■□□□ 1.47
HPS3-206ENST00000486530 NARFQ9UHQ1 456 aa24.21■■□□□ 1.47
HPS3-206ENST00000486530 MYO5AQ9Y4I1 1855 aaKnown RBP24.2■■□□□ 1.46
HPS3-206ENST00000486530 PDIA4P13667 645 aaKnown RBP24.2■■□□□ 1.46
HPS3-206ENST00000486530 SLC5A1P13866 664 aa24.2■■□□□ 1.46
HPS3-206ENST00000486530 WASHC4Q2M389 1173 aa24.2■■□□□ 1.46
HPS3-206ENST00000486530 AMIGO3Q86WK7 504 aa24.2■■□□□ 1.46
HPS3-206ENST00000486530 TCHHQ07283 1943 aa24.2■■□□□ 1.46
HPS3-206ENST00000486530 BRWD3Q6RI45 1802 aa24.2■■□□□ 1.46
HPS3-206ENST00000486530 DOCK2Q92608 1830 aa24.2■■□□□ 1.46
HPS3-206ENST00000486530 RXRBP28702 533 aa24.19■■□□□ 1.46
HPS3-206ENST00000486530 IGHMBP2P38935 993 aaKnown RBP24.19■■□□□ 1.46
HPS3-206ENST00000486530 CCDC102BQ68D86 513 aa24.19■■□□□ 1.46
HPS3-206ENST00000486530 PI16Q6UXB8 463 aa24.19■■□□□ 1.46
HPS3-206ENST00000486530 NECAB1Q8N987 351 aa24.19■■□□□ 1.46
HPS3-206ENST00000486530 LRRC4BQ9NT99 713 aa24.19■■□□□ 1.46
HPS3-206ENST00000486530 RTCBQ9Y3I0 505 aaKnown RBP24.19■■□□□ 1.46
HPS3-206ENST00000486530 SEC31BQ9NQW1 1179 aa24.19■■□□□ 1.46
HPS3-206ENST00000486530 A0A1B0GUL6 1792 aa24.18■■□□□ 1.46
HPS3-206ENST00000486530 TAF1LQ8IZX4 1826 aa24.18■■□□□ 1.46
HPS3-206ENST00000486530 MRE11P49959 708 aa24.18■■□□□ 1.46
HPS3-206ENST00000486530 STOX1Q6ZVD7 989 aa24.18■■□□□ 1.46
HPS3-206ENST00000486530 CHAMP1Q96JM3 812 aa24.18■■□□□ 1.46
HPS3-206ENST00000486530 CTNNA3Q9UI47 895 aa24.18■■□□□ 1.46
HPS3-206ENST00000486530 ATP6V1DQ9Y5K8 247 aa24.18■■□□□ 1.46
HPS3-206ENST00000486530 COL24A1Q17RW2 1714 aa24.18■■□□□ 1.46
HPS3-206ENST00000486530 MBD3O95983 291 aa24.17■■□□□ 1.46
HPS3-206ENST00000486530 PHKA1P46020 1223 aa24.17■■□□□ 1.46
HPS3-206ENST00000486530 SRP68Q9UHB9 627 aaKnown RBP24.17■■□□□ 1.46
HPS3-206ENST00000486530 F13A1P00488 732 aa24.17■■□□□ 1.46
HPS3-206ENST00000486530 Q6ZUG5 572 aa24.17■■□□□ 1.46
HPS3-206ENST00000486530 DHX32Q7L7V1 743 aaKnown RBP24.17■■□□□ 1.46
HPS3-206ENST00000486530 ARHGEF1Q92888 912 aaKnown RBP24.17■■□□□ 1.46
HPS3-206ENST00000486530 TBC1D9BQ66K14 1250 aa24.16■■□□□ 1.46
HPS3-206ENST00000486530 HELBQ8NG08 1087 aaPredicted RBP24.16■■□□□ 1.46
HPS3-206ENST00000486530 GPT2Q8TD30 523 aa24.16■■□□□ 1.46
HPS3-206ENST00000486530 NCLP19338 710 aaKnown RBP24.15■■□□□ 1.46
HPS3-206ENST00000486530 ADD2P35612 726 aa24.15■■□□□ 1.46
HPS3-206ENST00000486530 RGS17Q9UGC6 210 aaPredicted RBP24.15■■□□□ 1.46
HPS3-206ENST00000486530 E7EWF7 191 aa24.15■■□□□ 1.46
HPS3-206ENST00000486530 TRIM37O94972 964 aa24.15■■□□□ 1.46
HPS3-206ENST00000486530 PDCP20941 246 aa24.15■■□□□ 1.46
HPS3-206ENST00000486530 CAVIN1Q6NZI2 390 aaKnown RBP24.15■■□□□ 1.46
HPS3-206ENST00000486530 CDC5LQ99459 802 aaKnown RBP24.15■■□□□ 1.46
HPS3-206ENST00000486530 ZPR1O75312 459 aa24.14■■□□□ 1.45
HPS3-206ENST00000486530 GTF3C6Q969F1 213 aa24.14■■□□□ 1.45
HPS3-206ENST00000486530 PUS7LQ9H0K6 701 aaKnown RBP24.14■■□□□ 1.45
HPS3-206ENST00000486530 MTMR6Q9Y217 621 aa24.14■■□□□ 1.45
HPS3-206ENST00000486530 C4BP0C0L5 1744 aa24.14■■□□□ 1.45
HPS3-206ENST00000486530 XRCC6P12956 609 aaKnown RBP eCLIP24.13■■□□□ 1.45
HPS3-206ENST00000486530 UBE3CQ15386 1083 aa24.13■■□□□ 1.45
HPS3-206ENST00000486530 TMEM87AQ8NBN3 555 aa24.13■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms