RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 USP48Q86UV5 1035 aa22.22■■□□□ 1.15
COL6A1-204ENST00000486023 COA1Q9GZY4 146 aa22.22■■□□□ 1.15
COL6A1-204ENST00000486023 SPEF2Q9C093 1822 aa22.22■■□□□ 1.15
COL6A1-204ENST00000486023 RARSP54136 660 aaKnown RBP22.21■■□□□ 1.15
COL6A1-204ENST00000486023 GRM1Q13255 1194 aa22.21■■□□□ 1.15
COL6A1-204ENST00000486023 PUS3Q9BZE2 481 aaKnown RBP22.21■■□□□ 1.15
COL6A1-204ENST00000486023 USP44Q9H0E7 712 aa22.21■■□□□ 1.15
COL6A1-204ENST00000486023 ADAMTSL1Q8N6G6 1762 aa22.2■■□□□ 1.14
COL6A1-204ENST00000486023 KIF4BQ2VIQ3 1234 aa22.2■■□□□ 1.14
COL6A1-204ENST00000486023 DLK2Q6UY11 383 aa22.2■■□□□ 1.14
COL6A1-204ENST00000486023 JMYQ8N9B5 988 aa22.2■■□□□ 1.14
COL6A1-204ENST00000486023 ZC3H15Q8WU90 426 aaKnown RBP22.2■■□□□ 1.14
COL6A1-204ENST00000486023 CELF2O95319 508 aaKnown RBP22.19■■□□□ 1.14
COL6A1-204ENST00000486023 USP17L8P0C7I0 530 aa22.19■■□□□ 1.14
COL6A1-204ENST00000486023 CDC37L1Q7L3B6 337 aa22.19■■□□□ 1.14
COL6A1-204ENST00000486023 AGBL3Q8NEM8 1001 aa22.19■■□□□ 1.14
COL6A1-204ENST00000486023 DCPSQ96C86 337 aaKnown RBP22.19■■□□□ 1.14
COL6A1-204ENST00000486023 API5Q9BZZ5 524 aaKnown RBP22.19■■□□□ 1.14
COL6A1-204ENST00000486023 PGAP2Q9UHJ9 254 aa22.19■■□□□ 1.14
COL6A1-204ENST00000486023 UTYO14607 1347 aa22.19■■□□□ 1.14
COL6A1-204ENST00000486023 GTF2IP78347 998 aa22.18■■□□□ 1.14
COL6A1-204ENST00000486023 DEFB115Q30KQ5 88 aa22.18■■□□□ 1.14
COL6A1-204ENST00000486023 CST9Q5W186 159 aa22.18■■□□□ 1.14
COL6A1-204ENST00000486023 TTLL5Q6EMB2 1281 aa22.18■■□□□ 1.14
COL6A1-204ENST00000486023 FRAT1Q92837 279 aaPredicted RBP22.18■■□□□ 1.14
COL6A1-204ENST00000486023 VEGFBP49765 207 aa22.17■■□□□ 1.14
COL6A1-204ENST00000486023 DACT2Q5SW24 774 aa22.17■■□□□ 1.14
COL6A1-204ENST00000486023 ANKRD44Q8N8A2 993 aa22.17■■□□□ 1.14
COL6A1-204ENST00000486023 KLHDC4Q8TBB5 520 aa22.17■■□□□ 1.14
COL6A1-204ENST00000486023 CNTNAP1P78357 1384 aa22.16■■□□□ 1.14
COL6A1-204ENST00000486023 ASTN2O75129 1339 aaPredicted RBP22.16■■□□□ 1.14
COL6A1-204ENST00000486023 SCARF1Q14162 830 aa22.16■■□□□ 1.14
COL6A1-204ENST00000486023 KRT26Q7Z3Y9 468 aa22.16■■□□□ 1.14
COL6A1-204ENST00000486023 CD209Q9NNX6 404 aa22.16■■□□□ 1.14
COL6A1-204ENST00000486023 JAG2Q9Y219 1238 aa22.16■■□□□ 1.14
COL6A1-204ENST00000486023 BCAR3O75815 825 aa22.15■■□□□ 1.14
COL6A1-204ENST00000486023 UBTFL1P0CB47 393 aaPredicted RBP22.15■■□□□ 1.14
COL6A1-204ENST00000486023 STRIP1Q5VSL9 837 aa22.15■■□□□ 1.14
COL6A1-204ENST00000486023 OGFOD1Q8N543 542 aa22.15■■□□□ 1.14
COL6A1-204ENST00000486023 MYOZ2Q9NPC6 264 aa22.15■■□□□ 1.14
COL6A1-204ENST00000486023 PCNTO95613 3336 aa22.14■■□□□ 1.14
COL6A1-204ENST00000486023 ADM5C9JUS6 153 aa22.14■■□□□ 1.13
COL6A1-204ENST00000486023 ZNF280AP59817 542 aaPredicted RBP22.14■■□□□ 1.13
COL6A1-204ENST00000486023 RABL6Q3YEC7 729 aaPredicted RBP22.14■■□□□ 1.13
COL6A1-204ENST00000486023 LRRC24Q50LG9 513 aa22.14■■□□□ 1.13
COL6A1-204ENST00000486023 ZNF804AQ7Z570 1209 aa22.14■■□□□ 1.13
COL6A1-204ENST00000486023 GMLQ99445 158 aa22.14■■□□□ 1.13
COL6A1-204ENST00000486023 GGA3Q9NZ52 723 aa22.14■■□□□ 1.13
COL6A1-204ENST00000486023 SCAF8Q9UPN6 1271 aaKnown RBP22.14■■□□□ 1.13
COL6A1-204ENST00000486023 SCN9AQ15858 1988 aa22.14■■□□□ 1.13
COL6A1-204ENST00000486023 HSPA1AP0DMV8 641 aaKnown RBP22.13■■□□□ 1.13
COL6A1-204ENST00000486023 HSPA1BP0DMV9 641 aaKnown RBP22.13■■□□□ 1.13
COL6A1-204ENST00000486023 METTL24Q5JXM2 366 aa22.13■■□□□ 1.13
COL6A1-204ENST00000486023 ANGEL2Q5VTE6 544 aaKnown RBP22.13■■□□□ 1.13
COL6A1-204ENST00000486023 KIAA0825Q8IV33 1275 aa22.13■■□□□ 1.13
COL6A1-204ENST00000486023 F8W031 263 aaPredicted RBP22.12■■□□□ 1.13
COL6A1-204ENST00000486023 SULF1Q8IWU6 871 aa22.12■■□□□ 1.13
COL6A1-204ENST00000486023 RIPOR2Q9Y4F9 1068 aa22.12■■□□□ 1.13
COL6A1-204ENST00000486023 KIF16BQ96L93 1317 aa22.11■■□□□ 1.13
COL6A1-204ENST00000486023 RASSF10A6NK89 507 aa22.11■■□□□ 1.13
COL6A1-204ENST00000486023 GYG1P46976 350 aa22.11■■□□□ 1.13
COL6A1-204ENST00000486023 BRPF1P55201 1214 aaPredicted RBP22.11■■□□□ 1.13
COL6A1-204ENST00000486023 CYP4F22Q6NT55 531 aa22.11■■□□□ 1.13
COL6A1-204ENST00000486023 CLUAP1Q96AJ1 413 aa22.11■■□□□ 1.13
COL6A1-204ENST00000486023 MROH5Q6ZUA9 1318 aa22.1■■□□□ 1.13
COL6A1-204ENST00000486023 MYO3BQ8WXR4 1341 aa22.1■■□□□ 1.13
COL6A1-204ENST00000486023 WDR33Q9C0J8 1336 aaKnown RBP22.1■■□□□ 1.13
COL6A1-204ENST00000486023 IPO8O15397 1037 aaKnown RBP22.1■■□□□ 1.13
COL6A1-204ENST00000486023 NBPF9Q3BBW0 867 aa22.1■■□□□ 1.13
COL6A1-204ENST00000486023 HDAC9Q9UKV0 1011 aa22.1■■□□□ 1.13
COL6A1-204ENST00000486023 TNNQ9UQP3 1299 aa22.1■■□□□ 1.13
COL6A1-204ENST00000486023 LRRFIP2Q9Y608 721 aaKnown RBP22.1■■□□□ 1.13
COL6A1-204ENST00000486023 TLL2Q9Y6L7 1015 aa22.1■■□□□ 1.13
COL6A1-204ENST00000486023 HIBADHP31937 336 aaKnown RBP22.09■■□□□ 1.13
COL6A1-204ENST00000486023 UBE4AQ14139 1066 aa22.09■■□□□ 1.13
COL6A1-204ENST00000486023 C15orf52Q6ZUT6 534 aaKnown RBP22.09■■□□□ 1.13
COL6A1-204ENST00000486023 VPS37DQ86XT2 251 aa22.09■■□□□ 1.13
COL6A1-204ENST00000486023 MEIS3Q99687 375 aa22.09■■□□□ 1.13
COL6A1-204ENST00000486023 SIL1Q9H173 461 aa22.09■■□□□ 1.13
COL6A1-204ENST00000486023 IRS2Q9Y4H2 1338 aa22.08■■□□□ 1.13
COL6A1-204ENST00000486023 SASH1O94885 1247 aa22.08■■□□□ 1.13
COL6A1-204ENST00000486023 ARHGAP45Q92619 1136 aa22.08■■□□□ 1.13
COL6A1-204ENST00000486023 CAPNS2Q96L46 248 aa22.08■■□□□ 1.13
COL6A1-204ENST00000486023 IQSEC3Q9UPP2 1182 aaPredicted RBP22.08■■□□□ 1.13
COL6A1-204ENST00000486023 IL1R1P14778 569 aa22.07■■□□□ 1.12
COL6A1-204ENST00000486023 SAPCD2Q86UD0 394 aa22.07■■□□□ 1.12
COL6A1-204ENST00000486023 FRAT2O75474 233 aaPredicted RBP22.06■■□□□ 1.12
COL6A1-204ENST00000486023 ECE1P42892 770 aa22.06■■□□□ 1.12
COL6A1-204ENST00000486023 PRAMEF18Q5VWM3 479 aa22.06■■□□□ 1.12
COL6A1-204ENST00000486023 CERS5Q8N5B7 392 aa22.06■■□□□ 1.12
COL6A1-204ENST00000486023 FAM84BQ96KN1 310 aaPredicted RBP22.06■■□□□ 1.12
COL6A1-204ENST00000486023 PDE8BO95263 885 aa22.05■■□□□ 1.12
COL6A1-204ENST00000486023 TRIM27P14373 513 aa22.05■■□□□ 1.12
COL6A1-204ENST00000486023 HUNKP57058 714 aa22.05■■□□□ 1.12
COL6A1-204ENST00000486023 INTS3Q68E01 1043 aaKnown RBP22.05■■□□□ 1.12
COL6A1-204ENST00000486023 ATF7IPQ6VMQ6 1270 aa22.05■■□□□ 1.12
COL6A1-204ENST00000486023 C2orf69Q8N8R5 385 aa22.05■■□□□ 1.12
COL6A1-204ENST00000486023 AIDAQ96BJ3 306 aa22.05■■□□□ 1.12
COL6A1-204ENST00000486023 CDCA5Q96FF9 252 aa22.05■■□□□ 1.12
COL6A1-204ENST00000486023 HDAC5Q9UQL6 1122 aa22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms