RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 CST9Q5W186 159 aa20.88■□□□□ 0.93
TRIM54-203ENST00000485306 LDHAL6AQ6ZMR3 332 aa20.88■□□□□ 0.93
TRIM54-203ENST00000485306 PSME4Q14997 1843 aa20.88■□□□□ 0.93
TRIM54-203ENST00000485306 CELF2O95319 508 aaKnown RBP20.87■□□□□ 0.93
TRIM54-203ENST00000485306 USP17L8P0C7I0 530 aa20.87■□□□□ 0.93
TRIM54-203ENST00000485306 HSPA1AP0DMV8 641 aaKnown RBP20.87■□□□□ 0.93
TRIM54-203ENST00000485306 HSPA1BP0DMV9 641 aaKnown RBP20.87■□□□□ 0.93
TRIM54-203ENST00000485306 RARSP54136 660 aaKnown RBP20.87■□□□□ 0.93
TRIM54-203ENST00000485306 BRPF1P55201 1214 aaPredicted RBP20.87■□□□□ 0.93
TRIM54-203ENST00000485306 KIF4BQ2VIQ3 1234 aa20.87■□□□□ 0.93
TRIM54-203ENST00000485306 USP48Q86UV5 1035 aa20.87■□□□□ 0.93
TRIM54-203ENST00000485306 CNNM1Q9NRU3 951 aa20.87■□□□□ 0.93
TRIM54-203ENST00000485306 ZNF609O15014 1411 aa20.87■□□□□ 0.93
TRIM54-203ENST00000485306 UTYO14607 1347 aa20.86■□□□□ 0.93
TRIM54-203ENST00000485306 NBPF7P0C2Y1 421 aaPredicted RBP20.86■□□□□ 0.93
TRIM54-203ENST00000485306 ZNF280AP59817 542 aaPredicted RBP20.86■□□□□ 0.93
TRIM54-203ENST00000485306 STRIP1Q5VSL9 837 aa20.86■□□□□ 0.93
TRIM54-203ENST00000485306 TXNRD3Q86VQ6 643 aa20.86■□□□□ 0.93
TRIM54-203ENST00000485306 FBXW7Q969H0 707 aa20.86■□□□□ 0.93
TRIM54-203ENST00000485306 RCAN3Q9UKA8 241 aa20.86■□□□□ 0.93
TRIM54-203ENST00000485306 NOB1Q9ULX3 412 aaKnown RBP20.86■□□□□ 0.93
TRIM54-203ENST00000485306 MYO3BQ8WXR4 1341 aa20.85■□□□□ 0.93
TRIM54-203ENST00000485306 TAF5LO75529 589 aa20.85■□□□□ 0.93
TRIM54-203ENST00000485306 EGFRP00533 1210 aa20.85■□□□□ 0.93
TRIM54-203ENST00000485306 ECE1P42892 770 aa20.85■□□□□ 0.93
TRIM54-203ENST00000485306 PAXIP1Q6ZW49 1069 aaPredicted RBP20.85■□□□□ 0.93
TRIM54-203ENST00000485306 KRT26Q7Z3Y9 468 aa20.85■□□□□ 0.93
TRIM54-203ENST00000485306 OGFOD1Q8N543 542 aa20.85■□□□□ 0.93
TRIM54-203ENST00000485306 HELBQ8NG08 1087 aaPredicted RBP20.85■□□□□ 0.93
TRIM54-203ENST00000485306 SUCLG2Q96I99 432 aa20.85■□□□□ 0.93
TRIM54-203ENST00000485306 ZNF594Q96JF6 807 aaPredicted RBP20.85■□□□□ 0.93
TRIM54-203ENST00000485306 GMLQ99445 158 aa20.85■□□□□ 0.93
TRIM54-203ENST00000485306 ZNF408Q9H9D4 720 aa20.85■□□□□ 0.93
TRIM54-203ENST00000485306 TLL2Q9Y6L7 1015 aa20.85■□□□□ 0.93
TRIM54-203ENST00000485306 WDR33Q9C0J8 1336 aaKnown RBP20.84■□□□□ 0.93
TRIM54-203ENST00000485306 PCNTO95613 3336 aa20.84■□□□□ 0.93
TRIM54-203ENST00000485306 MMP14P50281 582 aa20.84■□□□□ 0.93
TRIM54-203ENST00000485306 TTLL5Q6EMB2 1281 aa20.84■□□□□ 0.93
TRIM54-203ENST00000485306 POLR2AP24928 1970 aaKnown RBP20.84■□□□□ 0.93
TRIM54-203ENST00000485306 PLIN1O60240 522 aa20.83■□□□□ 0.93
TRIM54-203ENST00000485306 DACT2Q5SW24 774 aa20.83■□□□□ 0.93
TRIM54-203ENST00000485306 C15orf52Q6ZUT6 534 aaKnown RBP20.83■□□□□ 0.93
TRIM54-203ENST00000485306 SULF1Q8IWU6 871 aa20.83■□□□□ 0.93
TRIM54-203ENST00000485306 MYOZ2Q9NPC6 264 aa20.83■□□□□ 0.93
TRIM54-203ENST00000485306 SCARF1Q14162 830 aa20.82■□□□□ 0.92
TRIM54-203ENST00000485306 ZNF804AQ7Z570 1209 aa20.82■□□□□ 0.92
TRIM54-203ENST00000485306 SAPCD2Q86UD0 394 aa20.82■□□□□ 0.92
TRIM54-203ENST00000485306 AIDAQ96BJ3 306 aa20.82■□□□□ 0.92
TRIM54-203ENST00000485306 KAZALD1Q96I82 304 aa20.82■□□□□ 0.92
TRIM54-203ENST00000485306 API5Q9BZZ5 524 aaKnown RBP20.82■□□□□ 0.92
TRIM54-203ENST00000485306 BICC1Q9H694 974 aaKnown RBP20.82■□□□□ 0.92
TRIM54-203ENST00000485306 CD209Q9NNX6 404 aa20.82■□□□□ 0.92
TRIM54-203ENST00000485306 KIF16BQ96L93 1317 aa20.81■□□□□ 0.92
TRIM54-203ENST00000485306 KLRK1P26718 216 aa20.81■□□□□ 0.92
TRIM54-203ENST00000485306 CAPNS2Q96L46 248 aa20.81■□□□□ 0.92
TRIM54-203ENST00000485306 GTF2IP78347 998 aa20.8■□□□□ 0.92
TRIM54-203ENST00000485306 MAP2K1Q02750 393 aaPredicted RBP20.8■□□□□ 0.92
TRIM54-203ENST00000485306 GRM1Q13255 1194 aa20.8■□□□□ 0.92
TRIM54-203ENST00000485306 RABL6Q3YEC7 729 aaPredicted RBP20.8■□□□□ 0.92
TRIM54-203ENST00000485306 IFFO2Q5TF58 517 aa20.8■□□□□ 0.92
TRIM54-203ENST00000485306 HHIPL1Q96JK4 782 aa20.8■□□□□ 0.92
TRIM54-203ENST00000485306 USP44Q9H0E7 712 aa20.8■□□□□ 0.92
TRIM54-203ENST00000485306 GGA3Q9NZ52 723 aa20.8■□□□□ 0.92
TRIM54-203ENST00000485306 HDAC9Q9UKV0 1011 aa20.8■□□□□ 0.92
TRIM54-203ENST00000485306 SNAP23O00161 211 aa20.79■□□□□ 0.92
TRIM54-203ENST00000485306 ARHGAP45Q92619 1136 aa20.79■□□□□ 0.92
TRIM54-203ENST00000485306 MXD3Q9BW11 206 aa20.79■□□□□ 0.92
TRIM54-203ENST00000485306 MROH5Q6ZUA9 1318 aa20.78■□□□□ 0.92
TRIM54-203ENST00000485306 UBE4AQ14139 1066 aa20.78■□□□□ 0.92
TRIM54-203ENST00000485306 ANGEL2Q5VTE6 544 aaKnown RBP20.78■□□□□ 0.92
TRIM54-203ENST00000485306 CYP4F22Q6NT55 531 aa20.78■□□□□ 0.92
TRIM54-203ENST00000485306 C2orf69Q8N8R5 385 aa20.78■□□□□ 0.92
TRIM54-203ENST00000485306 HDAC5Q9UQL6 1122 aa20.78■□□□□ 0.92
TRIM54-203ENST00000485306 ADM5C9JUS6 153 aa20.77■□□□□ 0.92
TRIM54-203ENST00000485306 BCAR3O75815 825 aa20.77■□□□□ 0.92
TRIM54-203ENST00000485306 IL1R1P14778 569 aa20.77■□□□□ 0.92
TRIM54-203ENST00000485306 ANKRD44Q8N8A2 993 aa20.77■□□□□ 0.92
TRIM54-203ENST00000485306 WBP1LQ9NX94 342 aa20.77■□□□□ 0.92
TRIM54-203ENST00000485306 A0A1B0GUL6 1792 aa20.77■□□□□ 0.91
TRIM54-203ENST00000485306 PITPNM2Q9BZ72 1349 aa20.77■□□□□ 0.91
TRIM54-203ENST00000485306 IRS2Q9Y4H2 1338 aa20.77■□□□□ 0.91
TRIM54-203ENST00000485306 IPO8O15397 1037 aaKnown RBP20.76■□□□□ 0.91
TRIM54-203ENST00000485306 MAP2K2P36507 400 aa20.76■□□□□ 0.91
TRIM54-203ENST00000485306 COL13A1Q5TAT6 717 aaPredicted RBP20.76■□□□□ 0.91
TRIM54-203ENST00000485306 KIAA0825Q8IV33 1275 aa20.76■□□□□ 0.91
TRIM54-203ENST00000485306 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.76■□□□□ 0.91
TRIM54-203ENST00000485306 BEGAINQ9BUH8 593 aa20.76■□□□□ 0.91
TRIM54-203ENST00000485306 PUS3Q9BZE2 481 aaKnown RBP20.76■□□□□ 0.91
TRIM54-203ENST00000485306 GBA2Q9HCG7 927 aaPredicted RBP20.76■□□□□ 0.91
TRIM54-203ENST00000485306 RIPOR2Q9Y4F9 1068 aa20.76■□□□□ 0.91
TRIM54-203ENST00000485306 ASTN2O75129 1339 aaPredicted RBP20.76■□□□□ 0.91
TRIM54-203ENST00000485306 CTCFP49711 727 aaPredicted RBP20.75■□□□□ 0.91
TRIM54-203ENST00000485306 HUNKP57058 714 aa20.75■□□□□ 0.91
TRIM54-203ENST00000485306 DLK2Q6UY11 383 aa20.75■□□□□ 0.91
TRIM54-203ENST00000485306 FOXN1O15353 648 aa20.74■□□□□ 0.91
TRIM54-203ENST00000485306 UBTFL1P0CB47 393 aaPredicted RBP20.74■□□□□ 0.91
TRIM54-203ENST00000485306 NBPF9Q3BBW0 867 aa20.74■□□□□ 0.91
TRIM54-203ENST00000485306 CDCA5Q96FF9 252 aa20.74■□□□□ 0.91
TRIM54-203ENST00000485306 ZNF646O15015 1829 aaPredicted RBP20.74■□□□□ 0.91
TRIM54-203ENST00000485306 WNT10BO00744 389 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms