RNA–Protein interactions for RNA: ENST00000483941.1

SMAD9-204, Transcript of SMAD family member 9, humanhuman

TSL 3

Gene SMAD9, Length 545 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-204ENST00000483941 VEGFBP49765 207 aa17.08■□□□□ 0.32
SMAD9-204ENST00000483941 PDE1AP54750 535 aa17.08■□□□□ 0.32
SMAD9-204ENST00000483941 LRRC24Q50LG9 513 aa17.08■□□□□ 0.32
SMAD9-204ENST00000483941 TNNI3KQ59H18 835 aa17.08■□□□□ 0.32
SMAD9-204ENST00000483941 SOGA3Q5TF21 947 aa17.08■□□□□ 0.32
SMAD9-204ENST00000483941 CCDC24Q8N4L8 307 aa17.08■□□□□ 0.32
SMAD9-204ENST00000483941 ANKRD2Q9GZV1 360 aa17.08■□□□□ 0.32
SMAD9-204ENST00000483941 BCL11AQ9H165 835 aa17.08■□□□□ 0.32
SMAD9-204ENST00000483941 ECHDC1Q9NTX5 307 aa17.08■□□□□ 0.32
SMAD9-204ENST00000483941 FPGT-TNNI3KV9GXZ4 949 aa17.08■□□□□ 0.32
SMAD9-204ENST00000483941 TMEM88BA6NKF7 163 aa17.07■□□□□ 0.32
SMAD9-204ENST00000483941 BBOX1O75936 387 aa17.07■□□□□ 0.32
SMAD9-204ENST00000483941 GLRX3O76003 335 aaKnown RBP17.07■□□□□ 0.32
SMAD9-204ENST00000483941 HOXA10P31260 410 aaPredicted RBP17.07■□□□□ 0.32
SMAD9-204ENST00000483941 PRPF40BQ6NWY9 871 aaKnown RBP17.07■□□□□ 0.32
SMAD9-204ENST00000483941 CNKSR1Q969H4 720 aa17.07■□□□□ 0.32
SMAD9-204ENST00000483941 L3MBTL3Q96JM7 780 aaPredicted RBP17.07■□□□□ 0.32
SMAD9-204ENST00000483941 CRAMP1Q96RY5 1269 aa17.07■□□□□ 0.32
SMAD9-204ENST00000483941 TMX4Q9H1E5 349 aaPredicted RBP17.07■□□□□ 0.32
SMAD9-204ENST00000483941 TAF1DQ9H5J8 278 aaPredicted RBP17.07■□□□□ 0.32
SMAD9-204ENST00000483941 SEC31BQ9NQW1 1179 aa17.07■□□□□ 0.32
SMAD9-204ENST00000483941 DDX60Q8IY21 1712 aaKnown RBP17.07■□□□□ 0.32
SMAD9-204ENST00000483941 THSD7BQ9C0I4 1608 aa17.07■□□□□ 0.32
SMAD9-204ENST00000483941 PDE8BO95263 885 aa17.06■□□□□ 0.32
SMAD9-204ENST00000483941 ALDH1B1P30837 517 aa17.06■□□□□ 0.32
SMAD9-204ENST00000483941 LBX1P52954 281 aa17.06■□□□□ 0.32
SMAD9-204ENST00000483941 GRAPQ13588 217 aa17.06■□□□□ 0.32
SMAD9-204ENST00000483941 PUM3Q15397 648 aaKnown RBP17.06■□□□□ 0.32
SMAD9-204ENST00000483941 STYK1Q6J9G0 422 aa17.06■□□□□ 0.32
SMAD9-204ENST00000483941 GRAPLQ8TC17 118 aaPredicted RBP17.06■□□□□ 0.32
SMAD9-204ENST00000483941 EAF2Q96CJ1 260 aaPredicted RBP17.06■□□□□ 0.32
SMAD9-204ENST00000483941 PUS3Q9BZE2 481 aaKnown RBP17.06■□□□□ 0.32
SMAD9-204ENST00000483941 SALL3Q9BXA9 1300 aa17.05■□□□□ 0.32
SMAD9-204ENST00000483941 NPR1P16066 1061 aa17.05■□□□□ 0.32
SMAD9-204ENST00000483941 GORABQ5T7V8 394 aa17.05■□□□□ 0.32
SMAD9-204ENST00000483941 TTC22Q5TAA0 569 aa17.05■□□□□ 0.32
SMAD9-204ENST00000483941 WBP1LQ9NX94 342 aa17.05■□□□□ 0.32
SMAD9-204ENST00000483941 SLC5A1P13866 664 aa17.04■□□□□ 0.32
SMAD9-204ENST00000483941 ATP2B3Q16720 1220 aa17.04■□□□□ 0.32
SMAD9-204ENST00000483941 EAPPQ56P03 285 aaPredicted RBP17.04■□□□□ 0.32
SMAD9-204ENST00000483941 CCDC158Q5M9N0 1113 aa17.04■□□□□ 0.32
SMAD9-204ENST00000483941 CASC1Q6TDU7 716 aa17.04■□□□□ 0.32
SMAD9-204ENST00000483941 C3orf67Q6ZVT6 689 aa17.04■□□□□ 0.32
SMAD9-204ENST00000483941 LPIN2Q92539 896 aa17.04■□□□□ 0.32
SMAD9-204ENST00000483941 MASTLQ96GX5 879 aa17.04■□□□□ 0.32
SMAD9-204ENST00000483941 NEUROD6Q96NK8 337 aa17.04■□□□□ 0.32
SMAD9-204ENST00000483941 A0A1B0GUL7 405 aa17.03■□□□□ 0.32
SMAD9-204ENST00000483941 ITGBL1O95965 494 aaPredicted RBP17.03■□□□□ 0.32
SMAD9-204ENST00000483941 IFIT1P09914 478 aaKnown RBP17.03■□□□□ 0.32
SMAD9-204ENST00000483941 SRGNP10124 158 aa17.03■□□□□ 0.32
SMAD9-204ENST00000483941 SKAP1Q86WV1 359 aa17.03■□□□□ 0.32
SMAD9-204ENST00000483941 ABHD8Q96I13 439 aa17.03■□□□□ 0.32
SMAD9-204ENST00000483941 CCDC8Q9H0W5 538 aaPredicted RBP17.03■□□□□ 0.32
SMAD9-204ENST00000483941 ZNF541Q9H0D2 1346 aa17.02■□□□□ 0.32
SMAD9-204ENST00000483941 HSPA8P11142 646 aaKnown RBP17.02■□□□□ 0.32
SMAD9-204ENST00000483941 CHRNDQ07001 517 aa17.02■□□□□ 0.32
SMAD9-204ENST00000483941 UBE4AQ14139 1066 aa17.02■□□□□ 0.32
SMAD9-204ENST00000483941 CCDC93Q567U6 631 aa17.02■□□□□ 0.32
SMAD9-204ENST00000483941 TICAM2Q86XR7 235 aa17.02■□□□□ 0.32
SMAD9-204ENST00000483941 OTUD7AQ8TE49 926 aaPredicted RBP17.02■□□□□ 0.32
SMAD9-204ENST00000483941 CELF1Q92879 486 aaKnown RBP17.02■□□□□ 0.32
SMAD9-204ENST00000483941 HACL1Q9UJ83 578 aa17.02■□□□□ 0.32
SMAD9-204ENST00000483941 RASSF10A6NK89 507 aa17.01■□□□□ 0.31
SMAD9-204ENST00000483941 ATP5JP18859 108 aa17.01■□□□□ 0.31
SMAD9-204ENST00000483941 KCNJ4P48050 445 aa17.01■□□□□ 0.31
SMAD9-204ENST00000483941 CNTROBQ8N137 903 aa17.01■□□□□ 0.31
SMAD9-204ENST00000483941 VGLL2Q8N8G2 317 aa17.01■□□□□ 0.31
SMAD9-204ENST00000483941 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.01■□□□□ 0.31
SMAD9-204ENST00000483941 MINPP1Q9UNW1 487 aa17.01■□□□□ 0.31
SMAD9-204ENST00000483941 CLEC11AQ9Y240 323 aa17.01■□□□□ 0.31
SMAD9-204ENST00000483941 ZNF609O15014 1411 aa17■□□□□ 0.31
SMAD9-204ENST00000483941 TIMM10P62072 90 aa17■□□□□ 0.31
SMAD9-204ENST00000483941 DBNLQ9UJU6 430 aaKnown RBP17■□□□□ 0.31
SMAD9-204ENST00000483941 TRPM7Q96QT4 1865 aa16.99■□□□□ 0.31
SMAD9-204ENST00000483941 TRIM6-TRIM34B2RNG4 842 aa16.99■□□□□ 0.31
SMAD9-204ENST00000483941 UQCRFS1P1P0C7P4 283 aa16.99■□□□□ 0.31
SMAD9-204ENST00000483941 EPHX2P34913 555 aa16.99■□□□□ 0.31
SMAD9-204ENST00000483941 MAP2K1Q02750 393 aaPredicted RBP16.99■□□□□ 0.31
SMAD9-204ENST00000483941 FKBP4Q02790 459 aaKnown RBP eCLIP16.99■□□□□ 0.31
SMAD9-204ENST00000483941 LRRFIP1Q32MZ4 808 aaKnown RBP16.99■□□□□ 0.31
SMAD9-204ENST00000483941 PI4K2BQ8TCG2 481 aa16.99■□□□□ 0.31
SMAD9-204ENST00000483941 XAGE2Q96GT9 111 aa16.99■□□□□ 0.31
SMAD9-204ENST00000483941 ZNF512BQ96KM6 892 aaPredicted RBP16.99■□□□□ 0.31
SMAD9-204ENST00000483941 GNL3LQ9NVN8 582 aaKnown RBP16.99■□□□□ 0.31
SMAD9-204ENST00000483941 LEMD3Q9Y2U8 911 aa16.99■□□□□ 0.31
SMAD9-204ENST00000483941 HIP1O00291 1037 aa16.98■□□□□ 0.31
SMAD9-204ENST00000483941 CDC45O75419 566 aa16.98■□□□□ 0.31
SMAD9-204ENST00000483941 FGFR2P21802 821 aa16.98■□□□□ 0.31
SMAD9-204ENST00000483941 DEFB115Q30KQ5 88 aa16.98■□□□□ 0.31
SMAD9-204ENST00000483941 GRIPAP1Q4V328 841 aa16.98■□□□□ 0.31
SMAD9-204ENST00000483941 CAVIN4Q5BKX8 364 aa16.98■□□□□ 0.31
SMAD9-204ENST00000483941 TTC39AQ5SRH9 613 aa16.98■□□□□ 0.31
SMAD9-204ENST00000483941 PNMA8AQ86V59 439 aaPredicted RBP16.98■□□□□ 0.31
SMAD9-204ENST00000483941 SP8Q8IXZ3 490 aa16.98■□□□□ 0.31
SMAD9-204ENST00000483941 C7orf43Q8WVR3 580 aa16.98■□□□□ 0.31
SMAD9-204ENST00000483941 EVI5LQ96CN4 794 aa16.98■□□□□ 0.31
SMAD9-204ENST00000483941 DBNDD2Q9BQY9 259 aa16.98■□□□□ 0.31
SMAD9-204ENST00000483941 ZNF277Q9NRM2 450 aaPredicted RBP16.98■□□□□ 0.31
SMAD9-204ENST00000483941 XDHP47989 1333 aa16.97■□□□□ 0.31
SMAD9-204ENST00000483941 WDR33Q9C0J8 1336 aaKnown RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms