RNA–Protein interactions for RNA: ENST00000479866.5

RAPGEF3-209, Transcript of Rap guanine nucleotide exchange factor 3, human

TSL 2

Gene RAPGEF3, Length 3,917 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAPGEF3-209	ENST00000479866	PUM3	Q15397	648 aa	Known RBP	13.57	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	ZSCAN25	Q6NSZ9	544 aa		13.57	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	NECAB1	Q8N987	351 aa		13.57	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	NOL10	Q9BSC4	688 aa	Known RBP	13.57	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	PDE8B	O95263	885 aa		13.57	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	RPS8	P62241	208 aa	Known RBP	13.57	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	RBM6	P78332	1123 aa	Known RBP	13.57	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	RABL6	Q3YEC7	729 aa	Predicted RBP	13.57	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	LRP10	Q7Z4F1	713 aa		13.57	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	SMAP1	Q8IYB5	467 aa	Predicted RBP	13.57	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	ZGPAT	Q8N5A5	531 aa	Known RBP	13.57	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	KBTBD3	Q8NAB2	608 aa		13.57	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	CCDC171	Q6TFL3	1326 aa		13.56	□□□□□ -0.24
RAPGEF3-209	ENST00000479866		H3BQV1	296 aa		13.56	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	CPLX1	O14810	134 aa		13.56	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	IFFO2	Q5TF58	517 aa		13.56	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	DDX11	Q96FC9	970 aa		13.56	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	AOX1	Q06278	1338 aa		13.56	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	GOLGA6L4	A6NEF3	574 aa		13.56	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	RIMBP2	O15034	1052 aa		13.56	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	IGSF3	O75054	1194 aa		13.56	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	CHRND	Q07001	517 aa		13.56	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	GNL2	Q13823	731 aa	Known RBP	13.56	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	MAGEB6	Q8N7X4	407 aa		13.56	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	TMX3	Q96JJ7	454 aa		13.56	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	PHLPP1	O60346	1717 aa		13.56	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.56	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	RFX5	P48382	616 aa	Predicted RBP	13.56	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	CREB3L3	Q68CJ9	461 aa		13.56	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	ATG9A	Q7Z3C6	839 aa		13.56	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	DDX49	Q9Y6V7	483 aa	Known RBP	13.56	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	RNF113A	O15541	343 aa	Known RBP	13.55	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	CBX1	P83916	185 aa		13.55	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	TRIM28	Q13263	835 aa	Known RBP	13.55	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	CCDC102B	Q68D86	513 aa		13.55	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	FAM43B	Q6ZT52	329 aa	Predicted RBP	13.55	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	ZNF589	Q86UQ0	364 aa	Predicted RBP	13.55	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	LPIN2	Q92539	896 aa		13.55	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	PSMD1	Q99460	953 aa		13.55	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	UQCRFS1P1	P0C7P4	283 aa		13.55	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	SSFA2	P28290	1259 aa		13.55	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	TXNRD1	Q16881	649 aa		13.55	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	TRERF1	Q96PN7	1200 aa		13.55	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	NAPB	Q9H115	298 aa		13.55	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	IL25	Q9H293	177 aa		13.55	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	RAD21	O60216	631 aa		13.55	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	MCM2	P49736	904 aa		13.55	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	IMMT	Q16891	758 aa	Known RBP	13.55	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	NARF	Q9UHQ1	456 aa		13.55	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	PXDNL	A1KZ92	1463 aa		13.55	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	CYP7A1	P22680	504 aa		13.54	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	RASEF	Q8IZ41	740 aa		13.54	□□□□□ -0.24
RAPGEF3-209	ENST00000479866		F8W031	263 aa	Predicted RBP	13.54	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	ZNF34	Q8IZ26	560 aa		13.54	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	RGS22	Q8NE09	1264 aa		13.54	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	TMEM51	Q9NW97	253 aa		13.54	□□□□□ -0.24
RAPGEF3-209	ENST00000479866		U3KPZ7	1027 aa	Predicted RBP	13.54	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	UTY	O14607	1347 aa		13.54	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	NUCB2	P80303	420 aa		13.54	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	DZIP1	Q86YF9	867 aa	Known RBP	13.54	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	CELF1	Q92879	486 aa	Known RBP	13.54	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	SNX14	Q9Y5W7	946 aa		13.54	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	ZNF213	O14771	459 aa		13.53	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	CLCN1	P35523	988 aa		13.53	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	CCT2	P78371	535 aa	Known RBP	13.53	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	FERMT3	Q86UX7	667 aa		13.53	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	GPR101	Q96P66	508 aa	Predicted RBP	13.53	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	HAUS7	Q99871	368 aa		13.53	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	SCARF1	Q14162	830 aa		13.53	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	SERPINB2	P05120	415 aa		13.53	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	AK2	P54819	239 aa		13.53	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	CASP7	P55210	303 aa		13.53	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	TTF1	Q15361	905 aa	Predicted RBP	13.53	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	MPND	Q8N594	471 aa		13.53	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	NEK1	Q96PY6	1258 aa		13.53	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	RAD50	Q92878	1312 aa		13.53	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	NACAP1	Q9BZK3	213 aa		13.52	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	CTNNA3	Q9UI47	895 aa		13.52	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	PARP3	Q9Y6F1	533 aa		13.52	□□□□□ -0.24
RAPGEF3-209	ENST00000479866	TTLL5	Q6EMB2	1281 aa		13.52	□□□□□ -0.25
RAPGEF3-209	ENST00000479866	BRF1	Q92994	677 aa		13.52	□□□□□ -0.25
RAPGEF3-209	ENST00000479866	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.52	□□□□□ -0.25
RAPGEF3-209	ENST00000479866	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.52	□□□□□ -0.25
RAPGEF3-209	ENST00000479866	MROH5	Q6ZUA9	1318 aa		13.52	□□□□□ -0.25
RAPGEF3-209	ENST00000479866	CCDC82	Q8N4S0	544 aa		13.52	□□□□□ -0.25
RAPGEF3-209	ENST00000479866	LIMCH1	Q9UPQ0	1083 aa		13.52	□□□□□ -0.25
RAPGEF3-209	ENST00000479866	LMO7	Q8WWI1	1683 aa		13.52	□□□□□ -0.25
RAPGEF3-209	ENST00000479866	ESPN	B1AK53	854 aa		13.51	□□□□□ -0.25
RAPGEF3-209	ENST00000479866	CIAO1	O76071	339 aa		13.51	□□□□□ -0.25
RAPGEF3-209	ENST00000479866	NFIX	Q14938	502 aa		13.51	□□□□□ -0.25
RAPGEF3-209	ENST00000479866	VPS53	Q5VIR6	699 aa		13.51	□□□□□ -0.25
RAPGEF3-209	ENST00000479866	CLEC4G	Q6UXB4	293 aa		13.51	□□□□□ -0.25
RAPGEF3-209	ENST00000479866	SYNE3	Q6ZMZ3	975 aa		13.51	□□□□□ -0.25
RAPGEF3-209	ENST00000479866	SLC27A2	O14975	620 aa		13.51	□□□□□ -0.25
RAPGEF3-209	ENST00000479866	RBM5	P52756	815 aa	Known RBP eCLIP	13.51	□□□□□ -0.25
RAPGEF3-209	ENST00000479866	PLCB2	Q00722	1185 aa		13.51	□□□□□ -0.25
RAPGEF3-209	ENST00000479866	KRT32	Q14532	448 aa		13.51	□□□□□ -0.25
RAPGEF3-209	ENST00000479866	ADCK5	Q3MIX3	580 aa		13.51	□□□□□ -0.25
RAPGEF3-209	ENST00000479866	SPATA5	Q8NB90	893 aa		13.51	□□□□□ -0.25
RAPGEF3-209	ENST00000479866	GPAA1	O43292	621 aa		13.51	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms