RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	MASTL	Q96GX5	879 aa		13.59	□□□□□ -0.23
APTX-223	ENST00000479656	IL25	Q9H293	177 aa		13.59	□□□□□ -0.23
APTX-223	ENST00000479656	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.59	□□□□□ -0.23
APTX-223	ENST00000479656	ZNF804B	A4D1E1	1349 aa		13.59	□□□□□ -0.23
APTX-223	ENST00000479656	AK9	Q5TCS8	1911 aa		13.59	□□□□□ -0.23
APTX-223	ENST00000479656		H0YIN7	160 aa		13.59	□□□□□ -0.23
APTX-223	ENST00000479656	EIF5B	O60841	1220 aa	Known RBP	13.59	□□□□□ -0.23
APTX-223	ENST00000479656	GPSM2	P81274	684 aa		13.59	□□□□□ -0.23
APTX-223	ENST00000479656	KBTBD3	Q8NAB2	608 aa		13.59	□□□□□ -0.23
APTX-223	ENST00000479656	TBC1D32	Q96NH3	1257 aa		13.59	□□□□□ -0.23
APTX-223	ENST00000479656	NSFL1C	Q9UNZ2	370 aa	Known RBP	13.59	□□□□□ -0.23
APTX-223	ENST00000479656	PPEF1	O14829	653 aa	Predicted RBP	13.58	□□□□□ -0.24
APTX-223	ENST00000479656	CHGB	P05060	677 aa		13.58	□□□□□ -0.24
APTX-223	ENST00000479656	KLRK1	P26718	216 aa		13.58	□□□□□ -0.24
APTX-223	ENST00000479656	CHRNA5	P30532	468 aa		13.58	□□□□□ -0.24
APTX-223	ENST00000479656	CAVIN4	Q5BKX8	364 aa		13.58	□□□□□ -0.24
APTX-223	ENST00000479656	FAM84B	Q96KN1	310 aa	Predicted RBP	13.58	□□□□□ -0.24
APTX-223	ENST00000479656	FAM227B	Q96M60	508 aa		13.58	□□□□□ -0.24
APTX-223	ENST00000479656	USP26	Q9BXU7	913 aa		13.58	□□□□□ -0.24
APTX-223	ENST00000479656	HMG20B	Q9P0W2	317 aa		13.58	□□□□□ -0.24
APTX-223	ENST00000479656		A0A1B0GUL6	1792 aa		13.57	□□□□□ -0.24
APTX-223	ENST00000479656	HIP1	O00291	1037 aa		13.57	□□□□□ -0.24
APTX-223	ENST00000479656	REC8	O95072	547 aa		13.57	□□□□□ -0.24
APTX-223	ENST00000479656	NMI	Q13287	307 aa	Predicted RBP	13.57	□□□□□ -0.24
APTX-223	ENST00000479656	SP8	Q8IXZ3	490 aa		13.57	□□□□□ -0.24
APTX-223	ENST00000479656	LEMD3	Q9Y2U8	911 aa		13.57	□□□□□ -0.24
APTX-223	ENST00000479656	XDH	P47989	1333 aa		13.57	□□□□□ -0.24
APTX-223	ENST00000479656	SGSM2	O43147	1006 aa		13.57	□□□□□ -0.24
APTX-223	ENST00000479656	CYP2E1	P05181	493 aa	Predicted RBP	13.57	□□□□□ -0.24
APTX-223	ENST00000479656	RASGRF1	Q13972	1273 aa		13.57	□□□□□ -0.24
APTX-223	ENST00000479656	TXNRD3	Q86VQ6	643 aa		13.57	□□□□□ -0.24
APTX-223	ENST00000479656	VPS37D	Q86XT2	251 aa		13.57	□□□□□ -0.24
APTX-223	ENST00000479656	SPATA5	Q8NB90	893 aa		13.57	□□□□□ -0.24
APTX-223	ENST00000479656	RUFY2	Q8WXA3	655 aa		13.57	□□□□□ -0.24
APTX-223	ENST00000479656	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	13.57	□□□□□ -0.24
APTX-223	ENST00000479656	ATP6V0A2	Q9Y487	856 aa		13.57	□□□□□ -0.24
APTX-223	ENST00000479656	ARAP2	Q8WZ64	1704 aa		13.56	□□□□□ -0.24
APTX-223	ENST00000479656	PSD	A5PKW4	1024 aa	Predicted RBP	13.56	□□□□□ -0.24
APTX-223	ENST00000479656	SLFNL1	Q499Z3	407 aa		13.56	□□□□□ -0.24
APTX-223	ENST00000479656	STYK1	Q6J9G0	422 aa		13.56	□□□□□ -0.24
APTX-223	ENST00000479656	TMC4	Q7Z404	712 aa		13.56	□□□□□ -0.24
APTX-223	ENST00000479656	FBXO33	Q7Z6M2	555 aa		13.56	□□□□□ -0.24
APTX-223	ENST00000479656	MTFR1L	Q9H019	292 aa		13.56	□□□□□ -0.24
APTX-223	ENST00000479656		A0A0D9SFI3	127 aa		13.55	□□□□□ -0.24
APTX-223	ENST00000479656	ATP2B4	P23634	1241 aa		13.55	□□□□□ -0.24
APTX-223	ENST00000479656	HIBADH	P31937	336 aa	Known RBP	13.55	□□□□□ -0.24
APTX-223	ENST00000479656	ANP32A	P39687	249 aa	Known RBP	13.55	□□□□□ -0.24
APTX-223	ENST00000479656	OLFM4	Q6UX06	510 aa		13.55	□□□□□ -0.24
APTX-223	ENST00000479656	GPR101	Q96P66	508 aa	Predicted RBP	13.55	□□□□□ -0.24
APTX-223	ENST00000479656	ANO2	Q9NQ90	1003 aa		13.55	□□□□□ -0.24
APTX-223	ENST00000479656	GNL3L	Q9NVN8	582 aa	Known RBP	13.55	□□□□□ -0.24
APTX-223	ENST00000479656	RBM25	P49756	843 aa	Known RBP	13.55	□□□□□ -0.24
APTX-223	ENST00000479656	PIH1D3	Q9NQM4	214 aa	Known RBP	13.55	□□□□□ -0.24
APTX-223	ENST00000479656	PODXL2	Q9NZ53	605 aa		13.55	□□□□□ -0.24
APTX-223	ENST00000479656	GGA1	Q9UJY5	639 aa		13.55	□□□□□ -0.24
APTX-223	ENST00000479656	IRS2	Q9Y4H2	1338 aa		13.54	□□□□□ -0.24
APTX-223	ENST00000479656	AKAP11	Q9UKA4	1901 aa		13.54	□□□□□ -0.24
APTX-223	ENST00000479656	COL11A2	P13942	1736 aa	Predicted RBP	13.54	□□□□□ -0.24
APTX-223	ENST00000479656	UFL1	O94874	794 aa		13.54	□□□□□ -0.24
APTX-223	ENST00000479656	TTF1	Q15361	905 aa	Predicted RBP	13.54	□□□□□ -0.24
APTX-223	ENST00000479656	TBC1D16	Q8TBP0	767 aa		13.54	□□□□□ -0.24
APTX-223	ENST00000479656	SEC62	Q99442	399 aa	Known RBP	13.54	□□□□□ -0.24
APTX-223	ENST00000479656	POLL	Q9UGP5	575 aa		13.54	□□□□□ -0.24
APTX-223	ENST00000479656	C6orf229	H3BNL8	230 aa		13.53	□□□□□ -0.24
APTX-223	ENST00000479656	RNF113A	O15541	343 aa	Known RBP	13.53	□□□□□ -0.24
APTX-223	ENST00000479656	POLD1	P28340	1107 aa		13.53	□□□□□ -0.24
APTX-223	ENST00000479656	ILDR2	Q71H61	639 aa		13.53	□□□□□ -0.24
APTX-223	ENST00000479656	CNKSR1	Q969H4	720 aa		13.53	□□□□□ -0.24
APTX-223	ENST00000479656		A0A0G2JLW4	131 aa		13.53	□□□□□ -0.24
APTX-223	ENST00000479656	FRAT2	O75474	233 aa	Predicted RBP	13.53	□□□□□ -0.24
APTX-223	ENST00000479656	IDH1	O75874	414 aa	Known RBP	13.53	□□□□□ -0.24
APTX-223	ENST00000479656	RFX7	Q2KHR2	1363 aa		13.53	□□□□□ -0.24
APTX-223	ENST00000479656	PRPF40B	Q6NWY9	871 aa	Known RBP	13.53	□□□□□ -0.24
APTX-223	ENST00000479656	KIAA1211	Q6ZU35	1233 aa		13.53	□□□□□ -0.24
APTX-223	ENST00000479656	C10orf71	Q711Q0	1435 aa		13.53	□□□□□ -0.24
APTX-223	ENST00000479656	TICAM2	Q86XR7	235 aa		13.53	□□□□□ -0.24
APTX-223	ENST00000479656	MPND	Q8N594	471 aa		13.53	□□□□□ -0.24
APTX-223	ENST00000479656	LSG1	Q9H089	658 aa	Known RBP	13.53	□□□□□ -0.24
APTX-223	ENST00000479656	TMX4	Q9H1E5	349 aa	Predicted RBP	13.53	□□□□□ -0.24
APTX-223	ENST00000479656	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.53	□□□□□ -0.24
APTX-223	ENST00000479656	PTH1R	Q03431	593 aa		13.52	□□□□□ -0.25
APTX-223	ENST00000479656	LRRFIP1	Q32MZ4	808 aa	Known RBP	13.52	□□□□□ -0.25
APTX-223	ENST00000479656	MCMDC2	Q4G0Z9	681 aa		13.52	□□□□□ -0.25
APTX-223	ENST00000479656	ZMYM1	Q5SVZ6	1142 aa		13.52	□□□□□ -0.25
APTX-223	ENST00000479656	C15orf52	Q6ZUT6	534 aa	Known RBP	13.52	□□□□□ -0.25
APTX-223	ENST00000479656	ZNF589	Q86UQ0	364 aa	Predicted RBP	13.52	□□□□□ -0.25
APTX-223	ENST00000479656	DENND2A	Q9ULE3	1009 aa		13.52	□□□□□ -0.25
APTX-223	ENST00000479656	DPEP1	P16444	411 aa		13.51	□□□□□ -0.25
APTX-223	ENST00000479656	SLC9C2	Q5TAH2	1124 aa		13.51	□□□□□ -0.25
APTX-223	ENST00000479656	CCDC129	Q6ZRS4	1044 aa		13.51	□□□□□ -0.25
APTX-223	ENST00000479656	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	13.51	□□□□□ -0.25
APTX-223	ENST00000479656	HELLS	Q9NRZ9	838 aa		13.51	□□□□□ -0.25
APTX-223	ENST00000479656	RAD50	Q92878	1312 aa		13.51	□□□□□ -0.25
APTX-223	ENST00000479656	SEMA3E	O15041	775 aa		13.5	□□□□□ -0.25
APTX-223	ENST00000479656	ZFY	P08048	801 aa	Predicted RBP	13.5	□□□□□ -0.25
APTX-223	ENST00000479656	KCNA3	P22001	575 aa		13.5	□□□□□ -0.25
APTX-223	ENST00000479656	WASHC4	Q2M389	1173 aa		13.5	□□□□□ -0.25
APTX-223	ENST00000479656	DPP8	Q6V1X1	898 aa	Predicted RBP	13.5	□□□□□ -0.25
APTX-223	ENST00000479656	KIF2C	Q99661	725 aa		13.5	□□□□□ -0.25
APTX-223	ENST00000479656	ABCF2	Q9UG63	623 aa		13.5	□□□□□ -0.25

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