RNA–Protein interactions for RNA: ENST00000479003.5

CHKB-208, Transcript of choline kinase beta, human

TSL 2

Gene CHKB, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHKB-208	ENST00000479003	ZSCAN30	Q86W11	494 aa		32.78	■■■□□ 2.84
CHKB-208	ENST00000479003	DBNL	Q9UJU6	430 aa	Known RBP	32.78	■■■□□ 2.84
CHKB-208	ENST00000479003	CNPY2	Q9Y2B0	182 aa		32.78	■■■□□ 2.84
CHKB-208	ENST00000479003	PDE8A	O60658	829 aa		32.77	■■■□□ 2.84
CHKB-208	ENST00000479003	ME3	Q16798	604 aa		32.77	■■■□□ 2.84
CHKB-208	ENST00000479003	HCLS1	P14317	486 aa	Predicted RBP	32.77	■■■□□ 2.84
CHKB-208	ENST00000479003	PROM2	Q8N271	834 aa		32.77	■■■□□ 2.84
CHKB-208	ENST00000479003	GREM2	Q9H772	168 aa		32.77	■■■□□ 2.84
CHKB-208	ENST00000479003	LRRC24	Q50LG9	513 aa		32.76	■■■□□ 2.83
CHKB-208	ENST00000479003	TBC1D9B	Q66K14	1250 aa		32.76	■■■□□ 2.83
CHKB-208	ENST00000479003	TSPY26P	Q9H489	355 aa		32.76	■■■□□ 2.83
CHKB-208	ENST00000479003	RFX7	Q2KHR2	1363 aa		32.76	■■■□□ 2.83
CHKB-208	ENST00000479003	ZPR1	O75312	459 aa		32.75	■■■□□ 2.83
CHKB-208	ENST00000479003	BICDL1	Q6ZP65	573 aa		32.75	■■■□□ 2.83
CHKB-208	ENST00000479003	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	32.75	■■■□□ 2.83
CHKB-208	ENST00000479003	PUS3	Q9BZE2	481 aa	Known RBP	32.75	■■■□□ 2.83
CHKB-208	ENST00000479003	MTMR6	Q9Y217	621 aa		32.75	■■■□□ 2.83
CHKB-208	ENST00000479003	DDX60	Q8IY21	1712 aa	Known RBP	32.75	■■■□□ 2.83
CHKB-208	ENST00000479003	IFIT5	Q13325	482 aa	Known RBP	32.74	■■■□□ 2.83
CHKB-208	ENST00000479003	UBR3	Q6ZT12	1888 aa		32.74	■■■□□ 2.83
CHKB-208	ENST00000479003	HMG20B	Q9P0W2	317 aa		32.74	■■■□□ 2.83
CHKB-208	ENST00000479003	EYA2	O00167	538 aa		32.74	■■■□□ 2.83
CHKB-208	ENST00000479003	RGL2	O15211	777 aa		32.74	■■■□□ 2.83
CHKB-208	ENST00000479003	TXNRD1	Q16881	649 aa		32.74	■■■□□ 2.83
CHKB-208	ENST00000479003	TSGA10IP	Q3SY00	556 aa		32.74	■■■□□ 2.83
CHKB-208	ENST00000479003	ZNF589	Q86UQ0	364 aa	Predicted RBP	32.74	■■■□□ 2.83
CHKB-208	ENST00000479003	TPCN1	Q9ULQ1	816 aa		32.74	■■■□□ 2.83
CHKB-208	ENST00000479003	ITGA6	P23229	1130 aa		32.73	■■■□□ 2.83
CHKB-208	ENST00000479003	TRAPPC3L	Q5T215	181 aa		32.72	■■■□□ 2.83
CHKB-208	ENST00000479003	UBE2H	P62256	183 aa		32.72	■■■□□ 2.83
CHKB-208	ENST00000479003	BLOC1S2	Q6QNY1	142 aa		32.72	■■■□□ 2.83
CHKB-208	ENST00000479003	TAF5L	O75529	589 aa		32.71	■■■□□ 2.83
CHKB-208	ENST00000479003	ANKRD1	Q15327	319 aa		32.71	■■■□□ 2.83
CHKB-208	ENST00000479003	EDC3	Q96F86	508 aa	Known RBP	32.71	■■■□□ 2.83
CHKB-208	ENST00000479003	RFC4	P35249	363 aa		32.71	■■■□□ 2.83
CHKB-208	ENST00000479003	IL15	P40933	162 aa	Predicted RBP	32.71	■■■□□ 2.83
CHKB-208	ENST00000479003	CIAO1	O76071	339 aa		32.7	■■■□□ 2.83
CHKB-208	ENST00000479003	APBA3	O96018	575 aa		32.7	■■■□□ 2.83
CHKB-208	ENST00000479003	PDIA4	P13667	645 aa	Known RBP	32.7	■■■□□ 2.83
CHKB-208	ENST00000479003	RPS6KB1	P23443	525 aa		32.7	■■■□□ 2.83
CHKB-208	ENST00000479003	LAMB2	P55268	1798 aa		32.7	■■■□□ 2.83
CHKB-208	ENST00000479003	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	32.69	■■■□□ 2.82
CHKB-208	ENST00000479003	CCDC183	Q5T5S1	534 aa		32.69	■■■□□ 2.82
CHKB-208	ENST00000479003	NECAB1	Q8N987	351 aa		32.69	■■■□□ 2.82
CHKB-208	ENST00000479003	TAF7L	Q5H9L4	462 aa		32.69	■■■□□ 2.82
CHKB-208	ENST00000479003	COL9A3	Q14050	684 aa	Predicted RBP	32.68	■■■□□ 2.82
CHKB-208	ENST00000479003	CSPP1	Q1MSJ5	1256 aa		32.68	■■■□□ 2.82
CHKB-208	ENST00000479003	HAUS7	Q99871	368 aa		32.68	■■■□□ 2.82
CHKB-208	ENST00000479003	DBNDD2	Q9BQY9	259 aa		32.68	■■■□□ 2.82
CHKB-208	ENST00000479003	COL24A1	Q17RW2	1714 aa		32.67	■■■□□ 2.82
CHKB-208	ENST00000479003	PLSCR1	O15162	318 aa		32.67	■■■□□ 2.82
CHKB-208	ENST00000479003	NAP1L5	Q96NT1	182 aa	Predicted RBP	32.67	■■■□□ 2.82
CHKB-208	ENST00000479003	TAF6L	Q9Y6J9	622 aa		32.67	■■■□□ 2.82
CHKB-208	ENST00000479003	ANKRD18B	A2A2Z9	1011 aa		32.66	■■■□□ 2.82
CHKB-208	ENST00000479003	ERFE	Q4G0M1	354 aa		32.66	■■■□□ 2.82
CHKB-208	ENST00000479003	RNF214	Q8ND24	703 aa		32.66	■■■□□ 2.82
CHKB-208	ENST00000479003	TNS1	Q9HBL0	1735 aa	Known RBP	32.66	■■■□□ 2.82
CHKB-208	ENST00000479003	LETM1	O95202	739 aa	Predicted RBP	32.66	■■■□□ 2.82
CHKB-208	ENST00000479003	ADRA2B	P18089	450 aa		32.66	■■■□□ 2.82
CHKB-208	ENST00000479003	MSN	P26038	577 aa	Known RBP	32.66	■■■□□ 2.82
CHKB-208	ENST00000479003	SETDB2	Q96T68	719 aa		32.66	■■■□□ 2.82
CHKB-208	ENST00000479003	FIBP	O43427	364 aa		32.65	■■■□□ 2.82
CHKB-208	ENST00000479003	TOB2	Q14106	344 aa	Predicted RBP	32.65	■■■□□ 2.82
CHKB-208	ENST00000479003	KRT32	Q14532	448 aa		32.65	■■■□□ 2.82
CHKB-208	ENST00000479003	FBXO3	Q9UK99	471 aa		32.65	■■■□□ 2.82
CHKB-208	ENST00000479003	NOL7	Q9UMY1	257 aa	Known RBP	32.65	■■■□□ 2.82
CHKB-208	ENST00000479003	ZNF609	O15014	1411 aa		32.65	■■■□□ 2.82
CHKB-208	ENST00000479003	DNM1	Q05193	864 aa	Known RBP	32.63	■■■□□ 2.81
CHKB-208	ENST00000479003	KLHL34	Q8N239	644 aa		32.63	■■■□□ 2.81
CHKB-208	ENST00000479003	LDHAL6A	Q6ZMR3	332 aa		32.62	■■■□□ 2.81
CHKB-208	ENST00000479003	FAM184A	Q8NB25	1140 aa		32.62	■■■□□ 2.81
CHKB-208	ENST00000479003	DNAJC2	Q99543	621 aa	Known RBP	32.62	■■■□□ 2.81
CHKB-208	ENST00000479003	ABCC12	Q96J65	1359 aa		32.62	■■■□□ 2.81
CHKB-208	ENST00000479003	VPS37C	A5D8V6	355 aa	Predicted RBP	32.62	■■■□□ 2.81
CHKB-208	ENST00000479003	LARP1B	Q659C4	914 aa	Known RBP	32.62	■■■□□ 2.81
CHKB-208	ENST00000479003	RIC1	Q4ADV7	1423 aa		32.61	■■■□□ 2.81
CHKB-208	ENST00000479003	LRP5	O75197	1615 aa		32.61	■■■□□ 2.81
CHKB-208	ENST00000479003	DTNB	O60941	627 aa		32.61	■■■□□ 2.81
CHKB-208	ENST00000479003	PDC	P20941	246 aa		32.61	■■■□□ 2.81
CHKB-208	ENST00000479003	TCEANC2	Q96MN5	208 aa		32.61	■■■□□ 2.81
CHKB-208	ENST00000479003	GPR108	Q9NPR9	543 aa		32.61	■■■□□ 2.81
CHKB-208	ENST00000479003	SEC31B	Q9NQW1	1179 aa		32.61	■■■□□ 2.81
CHKB-208	ENST00000479003	RIPOR2	Q9Y4F9	1068 aa		32.61	■■■□□ 2.81
CHKB-208	ENST00000479003	NDUFB9	Q9Y6M9	179 aa		32.61	■■■□□ 2.81
CHKB-208	ENST00000479003		U3KPZ7	1027 aa	Predicted RBP	32.61	■■■□□ 2.81
CHKB-208	ENST00000479003	HSP90B1	P14625	803 aa	Known RBP	32.6	■■■□□ 2.81
CHKB-208	ENST00000479003	C3orf67	Q6ZVT6	689 aa		32.6	■■■□□ 2.81
CHKB-208	ENST00000479003	CEP126	Q9P2H0	1117 aa		32.6	■■■□□ 2.81
CHKB-208	ENST00000479003	TIMM10	P62072	90 aa		32.6	■■■□□ 2.81
CHKB-208	ENST00000479003	MCMDC2	Q4G0Z9	681 aa		32.6	■■■□□ 2.81
CHKB-208	ENST00000479003	NBPF5P	Q86XG9	351 aa	Predicted RBP	32.6	■■■□□ 2.81
CHKB-208	ENST00000479003	UVSSA	Q2YD98	709 aa		32.59	■■■□□ 2.81
CHKB-208	ENST00000479003	CCDC152	Q4G0S7	254 aa		32.59	■■■□□ 2.81
CHKB-208	ENST00000479003	KBTBD3	Q8NAB2	608 aa		32.59	■■■□□ 2.81
CHKB-208	ENST00000479003	CASZ1	Q86V15	1759 aa		32.59	■■■□□ 2.81
CHKB-208	ENST00000479003	GTF2E1	P29083	439 aa	Predicted RBP	32.59	■■■□□ 2.81
CHKB-208	ENST00000479003	ZNF827	Q17R98	1081 aa		32.59	■■■□□ 2.81
CHKB-208	ENST00000479003	NEUROD6	Q96NK8	337 aa		32.59	■■■□□ 2.81
CHKB-208	ENST00000479003	NYX	Q9GZU5	481 aa		32.58	■■■□□ 2.81
CHKB-208	ENST00000479003	CNNM1	Q9NRU3	951 aa		32.58	■■■□□ 2.81

Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms