RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 XAGE3Q8WTP9 111 aa10.02□□□□□ -0.8
SYNE1-224ENST00000478916 CLEC11AQ9Y240 323 aa10.02□□□□□ -0.8
SYNE1-224ENST00000478916 LMNTD2Q8IXW0 634 aa10.02□□□□□ -0.81
SYNE1-224ENST00000478916 SELENOSQ9BQE4 189 aa10.02□□□□□ -0.81
SYNE1-224ENST00000478916 CDCA7Q9BWT1 371 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-224ENST00000478916 MKRN1Q9UHC7 482 aaKnown RBP10.02□□□□□ -0.81
SYNE1-224ENST00000478916 DNAI1Q9UI46 699 aa10.02□□□□□ -0.81
SYNE1-224ENST00000478916 FAM83GA6ND36 823 aa10.02□□□□□ -0.81
SYNE1-224ENST00000478916 ALDH1L1O75891 902 aa10.02□□□□□ -0.81
SYNE1-224ENST00000478916 JDP2Q8WYK2 163 aa10.02□□□□□ -0.81
SYNE1-224ENST00000478916 ASXL1Q8IXJ9 1541 aa10.02□□□□□ -0.81
SYNE1-224ENST00000478916 METAP2P50579 478 aaKnown RBP eCLIP10.02□□□□□ -0.81
SYNE1-224ENST00000478916 UBASH3AP57075 661 aa10.02□□□□□ -0.81
SYNE1-224ENST00000478916 CTAGE1Q96RT6 745 aa10.02□□□□□ -0.81
SYNE1-224ENST00000478916 TBC1D2Q9BYX2 928 aa10.02□□□□□ -0.81
SYNE1-224ENST00000478916 SNRKQ9NRH2 765 aa10.02□□□□□ -0.81
SYNE1-224ENST00000478916 SAMM50Q9Y512 469 aa10.02□□□□□ -0.81
SYNE1-224ENST00000478916 BIN1O00499 593 aa10.02□□□□□ -0.81
SYNE1-224ENST00000478916 ATP2B3Q16720 1220 aa10.02□□□□□ -0.81
SYNE1-224ENST00000478916 CCDC184Q52MB2 194 aa10.02□□□□□ -0.81
SYNE1-224ENST00000478916 DNAJC21Q5F1R6 531 aaKnown RBP10.02□□□□□ -0.81
SYNE1-224ENST00000478916 ARFGAP2Q8N6H7 521 aa10.02□□□□□ -0.81
SYNE1-224ENST00000478916 RBM28Q9NW13 759 aaKnown RBP10.02□□□□□ -0.81
SYNE1-224ENST00000478916 SAMD15Q9P1V8 674 aa10.02□□□□□ -0.81
SYNE1-224ENST00000478916 PRPHP41219 470 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 GUCY1B3Q02153 619 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 SETDB1Q15047 1291 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 CFAP58Q5T655 872 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 B4GALNT4Q76KP1 1039 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 PLCD3Q8N3E9 789 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 SIRT1Q96EB6 747 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 CNNM2Q9H8M5 875 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 PRC1O43663 620 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 DZIP3Q86Y13 1208 aaKnown RBP10.01□□□□□ -0.81
SYNE1-224ENST00000478916 EYA3Q99504 573 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 TTC12Q9H892 705 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-224ENST00000478916 STMN2Q93045 179 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 CTTNBP2Q8WZ74 1663 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 ABCC1P33527 1531 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 SKILP12757 684 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 ERMNQ8TAM6 284 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 UGGT2Q9NYU1 1516 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 B4DLN1 442 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 MRPL12P52815 198 aaKnown RBP10.01□□□□□ -0.81
SYNE1-224ENST00000478916 CCDC50Q8IVM0 306 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 VAT1LQ9HCJ6 419 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 CACNA2D3Q8IZS8 1091 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 ARHGAP45Q92619 1136 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 LRRC45Q96CN5 670 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 PSMD1Q99460 953 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 NCKAP5LQ9HCH0 1330 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 UHRF1BP1Q6BDS2 1440 aa10.01□□□□□ -0.81
SYNE1-224ENST00000478916 STX6O43752 255 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 CYP7A1P22680 504 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 RNF216Q9NWF9 866 aaPredicted RBP10□□□□□ -0.81
SYNE1-224ENST00000478916 ZEB2O60315 1214 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 TUBBP07437 444 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 PLCG2P16885 1265 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 IL15P40933 162 aaPredicted RBP10□□□□□ -0.81
SYNE1-224ENST00000478916 TBC1D5Q92609 795 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 IFT74Q96LB3 600 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 RBM27Q9P2N5 1060 aaKnown RBP10□□□□□ -0.81
SYNE1-224ENST00000478916 USP16Q9Y5T5 823 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 PPM1FP49593 454 aaPredicted RBP10□□□□□ -0.81
SYNE1-224ENST00000478916 KRBA2Q6ZNG9 492 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 COPS6Q7L5N1 327 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 TMTC2Q8N394 836 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 FAM76AQ8TAV0 307 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 KSR2Q6VAB6 950 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 ESR2Q92731 530 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 ANKRD2Q9GZV1 360 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 AKR1B10O60218 316 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 ARID4AP29374 1257 aaPredicted RBP10□□□□□ -0.81
SYNE1-224ENST00000478916 TCERG1LQ5VWI1 586 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 DCAF5Q96JK2 942 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 TRIM7Q9C029 511 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 ATP2A1O14983 1001 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 CIB2O75838 187 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 GBP1P32455 592 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 CCT2P78371 535 aaKnown RBP10□□□□□ -0.81
SYNE1-224ENST00000478916 NAA16Q6N069 864 aaPredicted RBP10□□□□□ -0.81
SYNE1-224ENST00000478916 NEK1Q96PY6 1258 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 STX8Q9UNK0 236 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 KIAA0556O60303 1618 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 N4BP3O15049 544 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 LMOD1P29536 600 aaPredicted RBP10□□□□□ -0.81
SYNE1-224ENST00000478916 WTAPQ15007 396 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 MICU3Q86XE3 530 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 RMND1Q9NWS8 449 aa10□□□□□ -0.81
SYNE1-224ENST00000478916 GJB2P29033 226 aa9.99□□□□□ -0.81
SYNE1-224ENST00000478916 CLNS1AP54105 237 aaKnown RBP9.99□□□□□ -0.81
SYNE1-224ENST00000478916 NUP153P49790 1475 aaKnown RBP9.99□□□□□ -0.81
SYNE1-224ENST00000478916 GRM8O00222 908 aa9.99□□□□□ -0.81
SYNE1-224ENST00000478916 PCK1P35558 622 aa9.99□□□□□ -0.81
SYNE1-224ENST00000478916 GNAQP50148 359 aa9.99□□□□□ -0.81
SYNE1-224ENST00000478916 CCDC63Q8NA47 563 aa9.99□□□□□ -0.81
SYNE1-224ENST00000478916 TBCAO75347 108 aaKnown RBP9.99□□□□□ -0.81
SYNE1-224ENST00000478916 CCDC102BQ68D86 513 aa9.99□□□□□ -0.81
SYNE1-224ENST00000478916 HDXQ7Z353 690 aa9.99□□□□□ -0.81
SYNE1-224ENST00000478916 ZNF830Q96NB3 372 aaPredicted RBP9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms