RNA–Protein interactions for RNA: ENST00000478279.5

APTX-222, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 684 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-222	ENST00000478279	MMP14	P50281	582 aa		13.75	□□□□□ -0.21
APTX-222	ENST00000478279	INHBE	P58166	350 aa		13.75	□□□□□ -0.21
APTX-222	ENST00000478279	NEUROD2	Q15784	382 aa		13.75	□□□□□ -0.21
APTX-222	ENST00000478279	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.75	□□□□□ -0.21
APTX-222	ENST00000478279	TRIM17	Q9Y577	477 aa		13.75	□□□□□ -0.21
APTX-222	ENST00000478279	CEP290	O15078	2479 aa		13.75	□□□□□ -0.21
APTX-222	ENST00000478279	MED23	Q9ULK4	1368 aa		13.74	□□□□□ -0.21
APTX-222	ENST00000478279	MYO3B	Q8WXR4	1341 aa		13.74	□□□□□ -0.21
APTX-222	ENST00000478279	MANSC4	A6NHS7	340 aa	Predicted RBP	13.74	□□□□□ -0.21
APTX-222	ENST00000478279	GOLGA2	Q08379	1002 aa		13.74	□□□□□ -0.21
APTX-222	ENST00000478279	PRKG1	Q13976	671 aa		13.74	□□□□□ -0.21
APTX-222	ENST00000478279	STRIP1	Q5VSL9	837 aa		13.74	□□□□□ -0.21
APTX-222	ENST00000478279	OTOP1	Q7RTM1	612 aa		13.74	□□□□□ -0.21
APTX-222	ENST00000478279	CCDC191	Q8NCU4	936 aa		13.74	□□□□□ -0.21
APTX-222	ENST00000478279	MXD3	Q9BW11	206 aa		13.74	□□□□□ -0.21
APTX-222	ENST00000478279	TRIM35	Q9UPQ4	493 aa		13.74	□□□□□ -0.21
APTX-222	ENST00000478279	WTIP	A6NIX2	430 aa	Predicted RBP	13.73	□□□□□ -0.21
APTX-222	ENST00000478279	DUSP27	Q5VZP5	1158 aa		13.73	□□□□□ -0.21
APTX-222	ENST00000478279	APOBEC3F	Q8IUX4	373 aa	Known RBP	13.73	□□□□□ -0.21
APTX-222	ENST00000478279	MYD88	Q99836	296 aa		13.73	□□□□□ -0.21
APTX-222	ENST00000478279	ANGEL1	Q9UNK9	670 aa	Known RBP	13.73	□□□□□ -0.21
APTX-222	ENST00000478279	SASH1	O94885	1247 aa		13.72	□□□□□ -0.21
APTX-222	ENST00000478279	IFNL1	Q8IU54	200 aa		13.72	□□□□□ -0.21
APTX-222	ENST00000478279	JARID2	Q92833	1246 aa	Predicted RBP	13.72	□□□□□ -0.21
APTX-222	ENST00000478279	FBXW7	Q969H0	707 aa		13.72	□□□□□ -0.21
APTX-222	ENST00000478279	SLC10A4	Q96EP9	437 aa		13.72	□□□□□ -0.21
APTX-222	ENST00000478279	CDC5L	Q99459	802 aa	Known RBP	13.72	□□□□□ -0.21
APTX-222	ENST00000478279	COA1	Q9GZY4	146 aa		13.72	□□□□□ -0.21
APTX-222	ENST00000478279	CWC25	Q9NXE8	425 aa	Predicted RBP	13.72	□□□□□ -0.21
APTX-222	ENST00000478279	MINPP1	Q9UNW1	487 aa		13.72	□□□□□ -0.21
APTX-222	ENST00000478279	ZBTB48	P10074	688 aa	Predicted RBP	13.71	□□□□□ -0.21
APTX-222	ENST00000478279	CCT4	P50991	539 aa	Known RBP	13.71	□□□□□ -0.21
APTX-222	ENST00000478279	FXR1	P51114	621 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
APTX-222	ENST00000478279	ERO1A	Q96HE7	468 aa		13.71	□□□□□ -0.21
APTX-222	ENST00000478279	ZBED3	Q96IU2	234 aa	Predicted RBP	13.71	□□□□□ -0.21
APTX-222	ENST00000478279	PHAX	Q9H814	394 aa	Known RBP	13.71	□□□□□ -0.21
APTX-222	ENST00000478279	BSDC1	Q9NW68	430 aa	Predicted RBP	13.71	□□□□□ -0.21
APTX-222	ENST00000478279	PTPN22	Q9Y2R2	807 aa		13.71	□□□□□ -0.21
APTX-222	ENST00000478279	ZNF646	O15015	1829 aa	Predicted RBP	13.71	□□□□□ -0.22
APTX-222	ENST00000478279	SZT2	Q5T011	3432 aa		13.71	□□□□□ -0.22
APTX-222	ENST00000478279	RBBP6	Q7Z6E9	1792 aa	Known RBP	13.71	□□□□□ -0.22
APTX-222	ENST00000478279	MAP3K11	Q16584	847 aa		13.7	□□□□□ -0.22
APTX-222	ENST00000478279	CCDC146	Q8IYE0	955 aa		13.7	□□□□□ -0.22
APTX-222	ENST00000478279	ARMC5	Q96C12	935 aa		13.7	□□□□□ -0.22
APTX-222	ENST00000478279	TRIOBP	Q9H2D6	2365 aa		13.69	□□□□□ -0.22
APTX-222	ENST00000478279	COL1A1	P02452	1464 aa	Predicted RBP	13.69	□□□□□ -0.22
APTX-222	ENST00000478279	UNCX	A6NJT0	531 aa		13.69	□□□□□ -0.22
APTX-222	ENST00000478279	IGF2BP3	O00425	579 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
APTX-222	ENST00000478279	CTSW	P56202	376 aa		13.69	□□□□□ -0.22
APTX-222	ENST00000478279	TTLL5	Q6EMB2	1281 aa		13.69	□□□□□ -0.22
APTX-222	ENST00000478279	KIAA0825	Q8IV33	1275 aa		13.69	□□□□□ -0.22
APTX-222	ENST00000478279	TTLL11	Q8NHH1	800 aa		13.69	□□□□□ -0.22
APTX-222	ENST00000478279	CD99L2	Q8TCZ2	262 aa		13.69	□□□□□ -0.22
APTX-222	ENST00000478279	RUNDC1	Q96C34	613 aa		13.69	□□□□□ -0.22
APTX-222	ENST00000478279	METTL22	Q9BUU2	404 aa	Predicted RBP	13.69	□□□□□ -0.22
APTX-222	ENST00000478279	DEFB129	Q9H1M3	183 aa		13.69	□□□□□ -0.22
APTX-222	ENST00000478279	FZD1	Q9UP38	647 aa		13.69	□□□□□ -0.22
APTX-222	ENST00000478279	LEMD3	Q9Y2U8	911 aa		13.69	□□□□□ -0.22
APTX-222	ENST00000478279	PPP1R12B	O60237	982 aa	Predicted RBP	13.68	□□□□□ -0.22
APTX-222	ENST00000478279	EN2	P19622	333 aa	Predicted RBP	13.68	□□□□□ -0.22
APTX-222	ENST00000478279	TXNRD3	Q86VQ6	643 aa		13.68	□□□□□ -0.22
APTX-222	ENST00000478279	WNK4	Q96J92	1243 aa		13.68	□□□□□ -0.22
APTX-222	ENST00000478279	EFCC1	Q9HA90	598 aa		13.68	□□□□□ -0.22
APTX-222	ENST00000478279	MBIP	Q9NS73	344 aa		13.68	□□□□□ -0.22
APTX-222	ENST00000478279	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.68	□□□□□ -0.22
APTX-222	ENST00000478279	DDX58	O95786	925 aa	Known RBP	13.67	□□□□□ -0.22
APTX-222	ENST00000478279	RALBP1	Q15311	655 aa		13.67	□□□□□ -0.22
APTX-222	ENST00000478279	OTUD7B	Q6GQQ9	843 aa		13.67	□□□□□ -0.22
APTX-222	ENST00000478279	CLMN	Q96JQ2	1002 aa		13.67	□□□□□ -0.22
APTX-222	ENST00000478279	GREM2	Q9H772	168 aa		13.67	□□□□□ -0.22
APTX-222	ENST00000478279	PPP2R3B	Q9Y5P8	575 aa		13.67	□□□□□ -0.22
APTX-222	ENST00000478279	GTF2I	P78347	998 aa		13.66	□□□□□ -0.22
APTX-222	ENST00000478279	SP3	Q02447	781 aa		13.66	□□□□□ -0.22
APTX-222	ENST00000478279	CRHR2	Q13324	411 aa		13.66	□□□□□ -0.22
APTX-222	ENST00000478279	DLGAP5	Q15398	846 aa		13.66	□□□□□ -0.22
APTX-222	ENST00000478279	SUPT20HL1	Q3ZLR7	823 aa		13.66	□□□□□ -0.22
APTX-222	ENST00000478279	MTMR14	Q8NCE2	650 aa		13.66	□□□□□ -0.22
APTX-222	ENST00000478279	TMEM106C	Q9BVX2	250 aa		13.66	□□□□□ -0.22
APTX-222	ENST00000478279	MYH3	P11055	1940 aa		13.66	□□□□□ -0.22
APTX-222	ENST00000478279	LAMB1	P07942	1786 aa		13.66	□□□□□ -0.22
APTX-222	ENST00000478279	ZNF804B	A4D1E1	1349 aa		13.65	□□□□□ -0.22
APTX-222	ENST00000478279	SPEF2	Q9C093	1822 aa		13.65	□□□□□ -0.22
APTX-222	ENST00000478279	ELL2	O00472	640 aa	Predicted RBP	13.65	□□□□□ -0.22
APTX-222	ENST00000478279	ZNF853	P0CG23	659 aa		13.65	□□□□□ -0.22
APTX-222	ENST00000478279	IGHMBP2	P38935	993 aa	Known RBP	13.65	□□□□□ -0.22
APTX-222	ENST00000478279	ANKRD2	Q9GZV1	360 aa		13.65	□□□□□ -0.22
APTX-222	ENST00000478279	COLQ	Q9Y215	455 aa	Predicted RBP	13.65	□□□□□ -0.22
APTX-222	ENST00000478279	SSC5D	A1L4H1	1573 aa		13.65	□□□□□ -0.22
APTX-222	ENST00000478279	TESPA1	A2RU30	521 aa	Predicted RBP	13.64	□□□□□ -0.23
APTX-222	ENST00000478279	IGKV5-2	P06315	115 aa		13.64	□□□□□ -0.23
APTX-222	ENST00000478279	KLRK1	P26718	216 aa		13.64	□□□□□ -0.23
APTX-222	ENST00000478279	ZNF333	Q96JL9	665 aa		13.64	□□□□□ -0.23
APTX-222	ENST00000478279	PTPN18	Q99952	460 aa		13.64	□□□□□ -0.23
APTX-222	ENST00000478279	MAP3K2	Q9Y2U5	619 aa		13.64	□□□□□ -0.23
APTX-222	ENST00000478279	RANBP2	P49792	3224 aa	Known RBP	13.63	□□□□□ -0.23
APTX-222	ENST00000478279	USP2	O75604	605 aa	Predicted RBP	13.63	□□□□□ -0.23
APTX-222	ENST00000478279	GJA5	P36382	358 aa		13.63	□□□□□ -0.23
APTX-222	ENST00000478279	IREB2	P48200	963 aa	Known RBP	13.63	□□□□□ -0.23
APTX-222	ENST00000478279	CAP1	Q01518	475 aa		13.63	□□□□□ -0.23
APTX-222	ENST00000478279	NBPF12	Q5TAG4	269 aa	Predicted RBP	13.63	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms