RNA–Protein interactions for RNA: ENST00000475243.5

VAPB-204, Transcript of VAMP associated protein B and C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAPB, Length 7,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-204ENST00000475243 ZC3H12CQ9C0D7 883 aaKnown RBP12.47□□□□□ -0.41
VAPB-204ENST00000475243 PPIP5K1Q6PFW1 1433 aa12.47□□□□□ -0.41
VAPB-204ENST00000475243 GOLGA6L9A6NEM1 432 aa12.47□□□□□ -0.41
VAPB-204ENST00000475243 CCDC172P0C7W6 258 aa12.47□□□□□ -0.41
VAPB-204ENST00000475243 ZNF804AQ7Z570 1209 aa12.47□□□□□ -0.41
VAPB-204ENST00000475243 DNAI1Q9UI46 699 aa12.47□□□□□ -0.41
VAPB-204ENST00000475243 SSX2IPQ9Y2D8 614 aa12.47□□□□□ -0.41
VAPB-204ENST00000475243 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.47□□□□□ -0.414e-13■□□□□ 9.8
VAPB-204ENST00000475243 FERP16591 822 aa12.47□□□□□ -0.41
VAPB-204ENST00000475243 LRSAM1Q6UWE0 723 aa12.47□□□□□ -0.41
VAPB-204ENST00000475243 DDB1Q16531 1140 aa12.47□□□□□ -0.41
VAPB-204ENST00000475243 CEP112Q8N8E3 955 aa12.47□□□□□ -0.41
VAPB-204ENST00000475243 CYLC1P35663 651 aaPredicted RBP12.46□□□□□ -0.41
VAPB-204ENST00000475243 KRT24Q2M2I5 525 aa12.46□□□□□ -0.41
VAPB-204ENST00000475243 KSR2Q6VAB6 950 aa12.46□□□□□ -0.41
VAPB-204ENST00000475243 POTEB2H3BUK9 544 aa12.46□□□□□ -0.41
VAPB-204ENST00000475243 GIGYF2Q6Y7W6 1299 aaKnown RBP12.46□□□□□ -0.41
VAPB-204ENST00000475243 SELENOOQ9BVL4 669 aa12.46□□□□□ -0.41
VAPB-204ENST00000475243 C6orf50Q9HD87 102 aa12.46□□□□□ -0.41
VAPB-204ENST00000475243 CCDC155Q8N6L0 562 aa12.46□□□□□ -0.41
VAPB-204ENST00000475243 CAPZA3Q96KX2 299 aa12.46□□□□□ -0.41
VAPB-204ENST00000475243 SKILP12757 684 aa12.46□□□□□ -0.42
VAPB-204ENST00000475243 SAP30BPQ9UHR5 308 aaKnown RBP12.46□□□□□ -0.42
VAPB-204ENST00000475243 TNNI2P48788 182 aa12.46□□□□□ -0.42
VAPB-204ENST00000475243 IPO4Q8TEX9 1081 aaKnown RBP12.46□□□□□ -0.42
VAPB-204ENST00000475243 TFCP2L1Q9NZI6 479 aa12.46□□□□□ -0.42
VAPB-204ENST00000475243 PSMA7O14818 248 aa12.45□□□□□ -0.42
VAPB-204ENST00000475243 PPM1EQ8WY54 764 aa12.45□□□□□ -0.42
VAPB-204ENST00000475243 MRPS27Q92552 414 aaKnown RBP12.45□□□□□ -0.42
VAPB-204ENST00000475243 RRP36Q96EU6 259 aaKnown RBP12.45□□□□□ -0.42
VAPB-204ENST00000475243 CTAGE1Q96RT6 745 aa12.45□□□□□ -0.42
VAPB-204ENST00000475243 NSD2O96028 1365 aa12.45□□□□□ -0.42
VAPB-204ENST00000475243 IL15P40933 162 aaPredicted RBP12.45□□□□□ -0.42
VAPB-204ENST00000475243 TFCP2Q12800 502 aa12.45□□□□□ -0.42
VAPB-204ENST00000475243 CCDC50Q8IVM0 306 aa12.45□□□□□ -0.42
VAPB-204ENST00000475243 MRPL50Q8N5N7 158 aaKnown RBP12.45□□□□□ -0.42
VAPB-204ENST00000475243 TNNQ9UQP3 1299 aa12.45□□□□□ -0.42
VAPB-204ENST00000475243 SYT1P21579 422 aa12.45□□□□□ -0.42
VAPB-204ENST00000475243 EIF4A2Q14240 407 aaKnown RBP12.45□□□□□ -0.42
VAPB-204ENST00000475243 CCDC186Q7Z3E2 898 aa12.45□□□□□ -0.42
VAPB-204ENST00000475243 BBXQ8WY36 941 aaPredicted RBP12.45□□□□□ -0.42
VAPB-204ENST00000475243 PKD2L1Q9P0L9 805 aa12.45□□□□□ -0.42
VAPB-204ENST00000475243 KRT2P35908 639 aa12.45□□□□□ -0.42
VAPB-204ENST00000475243 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.45□□□□□ -0.42
VAPB-204ENST00000475243 V9GYY5 206 aaPredicted RBP12.45□□□□□ -0.42
VAPB-204ENST00000475243 FAM13AO94988 1023 aa12.45□□□□□ -0.42
VAPB-204ENST00000475243 ATP8B2P98198 1209 aa12.45□□□□□ -0.42
VAPB-204ENST00000475243 CKAP4Q07065 602 aaKnown RBP12.45□□□□□ -0.42
VAPB-204ENST00000475243 KLHL40Q2TBA0 621 aa12.45□□□□□ -0.42
VAPB-204ENST00000475243 AKAP4Q5JQC9 854 aa12.45□□□□□ -0.42
VAPB-204ENST00000475243 SETD1BQ9UPS6 1966 aaKnown RBP12.44□□□□□ -0.42
VAPB-204ENST00000475243 SMIM23A6NLE4 172 aa12.44□□□□□ -0.42
VAPB-204ENST00000475243 GNAQP50148 359 aa12.44□□□□□ -0.42
VAPB-204ENST00000475243 PLCB3Q01970 1234 aa12.44□□□□□ -0.42
VAPB-204ENST00000475243 APBB1IPQ7Z5R6 666 aaPredicted RBP12.44□□□□□ -0.42
VAPB-204ENST00000475243 PODXL2Q9NZ53 605 aa12.44□□□□□ -0.42
VAPB-204ENST00000475243 IRS4O14654 1257 aaPredicted RBP12.44□□□□□ -0.42
VAPB-204ENST00000475243 SPECC1LQ69YQ0 1117 aa12.44□□□□□ -0.42
VAPB-204ENST00000475243 PLVAPQ9BX97 442 aa12.44□□□□□ -0.42
VAPB-204ENST00000475243 RTCBQ9Y3I0 505 aaKnown RBP12.44□□□□□ -0.42
VAPB-204ENST00000475243 HDAC1Q13547 482 aaPredicted RBP12.44□□□□□ -0.42
VAPB-204ENST00000475243 BICC1Q9H694 974 aaKnown RBP12.44□□□□□ -0.42
VAPB-204ENST00000475243 RTL1A6NKG5 1358 aa12.44□□□□□ -0.42
VAPB-204ENST00000475243 UBXN1Q04323 297 aa12.44□□□□□ -0.42
VAPB-204ENST00000475243 MTHFSDQ2M296 383 aaKnown RBP12.44□□□□□ -0.42
VAPB-204ENST00000475243 CCDC63Q8NA47 563 aa12.44□□□□□ -0.42
VAPB-204ENST00000475243 PAXBP1Q9Y5B6 917 aa12.44□□□□□ -0.42
VAPB-204ENST00000475243 IL16Q14005 1332 aa12.44□□□□□ -0.42
VAPB-204ENST00000475243 EHBP1Q8NDI1 1231 aa12.44□□□□□ -0.42
VAPB-204ENST00000475243 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.44□□□□□ -0.423e-7■■■■□ 22
VAPB-204ENST00000475243 MXRA7P84157 204 aa12.44□□□□□ -0.42
VAPB-204ENST00000475243 ANKRD44Q8N8A2 993 aa12.44□□□□□ -0.42
VAPB-204ENST00000475243 NYXQ9GZU5 481 aa12.44□□□□□ -0.42
VAPB-204ENST00000475243 DHX29Q7Z478 1369 aaKnown RBP12.44□□□□□ -0.42
VAPB-204ENST00000475243 ANKRD36BQ8N2N9 1353 aa12.44□□□□□ -0.42
VAPB-204ENST00000475243 TRIM75PA6NK02 468 aa12.43□□□□□ -0.42
VAPB-204ENST00000475243 RAB3GAP1Q15042 981 aa12.43□□□□□ -0.42
VAPB-204ENST00000475243 KARSQ15046 597 aaKnown RBP12.43□□□□□ -0.42
VAPB-204ENST00000475243 DMRT2Q9Y5R5 561 aa12.43□□□□□ -0.42
VAPB-204ENST00000475243 SPTLC2O15270 562 aa12.43□□□□□ -0.42
VAPB-204ENST00000475243 IMPG2Q9BZV3 1241 aa12.43□□□□□ -0.42
VAPB-204ENST00000475243 IQCGQ9H095 443 aaKnown RBP12.43□□□□□ -0.42
VAPB-204ENST00000475243 DENND4BO75064 1496 aaPredicted RBP12.43□□□□□ -0.42
VAPB-204ENST00000475243 ASXL1Q8IXJ9 1541 aa12.43□□□□□ -0.42
VAPB-204ENST00000475243 UVSSAQ2YD98 709 aa12.43□□□□□ -0.42
VAPB-204ENST00000475243 USP37Q86T82 979 aa12.43□□□□□ -0.42
VAPB-204ENST00000475243 ZHX1Q9UKY1 873 aaPredicted RBP12.43□□□□□ -0.42
VAPB-204ENST00000475243 CTAGE9A4FU28 777 aa12.43□□□□□ -0.42
VAPB-204ENST00000475243 AK2P54819 239 aa12.43□□□□□ -0.42
VAPB-204ENST00000475243 GPATCH11Q8N954 259 aa12.43□□□□□ -0.42
VAPB-204ENST00000475243 TTC12Q9H892 705 aaPredicted RBP12.43□□□□□ -0.42
VAPB-204ENST00000475243 TPTE2Q6XPS3 522 aa12.43□□□□□ -0.42
VAPB-204ENST00000475243 F13A1P00488 732 aa12.42□□□□□ -0.42
VAPB-204ENST00000475243 CREB3L3Q68CJ9 461 aa12.42□□□□□ -0.42
VAPB-204ENST00000475243 DTHD1Q6ZMT9 781 aa12.42□□□□□ -0.42
VAPB-204ENST00000475243 TSPYL6Q8N831 410 aa12.42□□□□□ -0.42
VAPB-204ENST00000475243 DCAF17Q5H9S7 520 aaPredicted RBP12.42□□□□□ -0.42
VAPB-204ENST00000475243 CALCOCO1Q9P1Z2 691 aa12.42□□□□□ -0.42
VAPB-204ENST00000475243 LDHBP07195 334 aaKnown RBP12.42□□□□□ -0.42
VAPB-204ENST00000475243 NCBP1Q09161 790 aaKnown RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms