RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 SAPCD2Q86UD0 394 aa23.58■■□□□ 1.37
COL7A1-209ENST00000474432 TRMT2AQ8IZ69 625 aaKnown RBP23.58■■□□□ 1.37
COL7A1-209ENST00000474432 WBP1LQ9NX94 342 aa23.58■■□□□ 1.37
COL7A1-209ENST00000474432 ZNF804BA4D1E1 1349 aa23.58■■□□□ 1.36
COL7A1-209ENST00000474432 SNAP23O00161 211 aa23.57■■□□□ 1.36
COL7A1-209ENST00000474432 CYP4F22Q6NT55 531 aa23.57■■□□□ 1.36
COL7A1-209ENST00000474432 SLC4A10Q6U841 1118 aa23.57■■□□□ 1.36
COL7A1-209ENST00000474432 MPHOSPH8Q99549 860 aa23.57■■□□□ 1.36
COL7A1-209ENST00000474432 SRCIN1Q9C0H9 1055 aa23.57■■□□□ 1.36
COL7A1-209ENST00000474432 ANKRD2Q9GZV1 360 aa23.57■■□□□ 1.36
COL7A1-209ENST00000474432 DACT2Q5SW24 774 aa23.56■■□□□ 1.36
COL7A1-209ENST00000474432 SSH1Q8WYL5 1049 aa23.56■■□□□ 1.36
COL7A1-209ENST00000474432 CAPNS2Q96L46 248 aa23.56■■□□□ 1.36
COL7A1-209ENST00000474432 MXD3Q9BW11 206 aa23.56■■□□□ 1.36
COL7A1-209ENST00000474432 COA1Q9GZY4 146 aa23.56■■□□□ 1.36
COL7A1-209ENST00000474432 CCER2I3L3R5 266 aa23.55■■□□□ 1.36
COL7A1-209ENST00000474432 IFIT5Q13325 482 aaKnown RBP23.55■■□□□ 1.36
COL7A1-209ENST00000474432 UTYO14607 1347 aa23.55■■□□□ 1.36
COL7A1-209ENST00000474432 ADM5C9JUS6 153 aa23.54■■□□□ 1.36
COL7A1-209ENST00000474432 NBPF7P0C2Y1 421 aaPredicted RBP23.54■■□□□ 1.36
COL7A1-209ENST00000474432 KRT26Q7Z3Y9 468 aa23.54■■□□□ 1.36
COL7A1-209ENST00000474432 HELBQ8NG08 1087 aaPredicted RBP23.54■■□□□ 1.36
COL7A1-209ENST00000474432 SUCLG2Q96I99 432 aa23.54■■□□□ 1.36
COL7A1-209ENST00000474432 ZNF594Q96JF6 807 aaPredicted RBP23.54■■□□□ 1.36
COL7A1-209ENST00000474432 C9orf78Q9NZ63 289 aaPredicted RBP23.54■■□□□ 1.36
COL7A1-209ENST00000474432 TAF5LO75529 589 aa23.53■■□□□ 1.36
COL7A1-209ENST00000474432 USP17L8P0C7I0 530 aa23.53■■□□□ 1.36
COL7A1-209ENST00000474432 ZNF408Q9H9D4 720 aa23.53■■□□□ 1.36
COL7A1-209ENST00000474432 STRIP1Q5VSL9 837 aa23.52■■□□□ 1.36
COL7A1-209ENST00000474432 C15orf52Q6ZUT6 534 aaKnown RBP23.52■■□□□ 1.36
COL7A1-209ENST00000474432 HHIPL1Q96JK4 782 aa23.52■■□□□ 1.36
COL7A1-209ENST00000474432 MYOZ2Q9NPC6 264 aa23.52■■□□□ 1.36
COL7A1-209ENST00000474432 GGA3Q9NZ52 723 aa23.52■■□□□ 1.36
COL7A1-209ENST00000474432 CHMP3Q9Y3E7 222 aa23.52■■□□□ 1.36
COL7A1-209ENST00000474432 SCARF1Q14162 830 aa23.51■■□□□ 1.35
COL7A1-209ENST00000474432 DCPSQ96C86 337 aaKnown RBP23.51■■□□□ 1.35
COL7A1-209ENST00000474432 PTPRCP08575 1304 aa23.51■■□□□ 1.35
COL7A1-209ENST00000474432 ECE1P42892 770 aa23.5■■□□□ 1.35
COL7A1-209ENST00000474432 CD209Q9NNX6 404 aa23.5■■□□□ 1.35
COL7A1-209ENST00000474432 AOC2O75106 756 aa23.49■■□□□ 1.35
COL7A1-209ENST00000474432 CCDC57Q2TAC2 916 aa23.49■■□□□ 1.35
COL7A1-209ENST00000474432 ANGEL2Q5VTE6 544 aaKnown RBP23.49■■□□□ 1.35
COL7A1-209ENST00000474432 PAXIP1Q6ZW49 1069 aaPredicted RBP23.49■■□□□ 1.35
COL7A1-209ENST00000474432 GRM1Q13255 1194 aa23.48■■□□□ 1.35
COL7A1-209ENST00000474432 RABL6Q3YEC7 729 aaPredicted RBP23.48■■□□□ 1.35
COL7A1-209ENST00000474432 LDHAL6AQ6ZMR3 332 aa23.48■■□□□ 1.35
COL7A1-209ENST00000474432 KCNJ4P48050 445 aa23.47■■□□□ 1.35
COL7A1-209ENST00000474432 CTCFP49711 727 aaPredicted RBP23.47■■□□□ 1.35
COL7A1-209ENST00000474432 MAP2K1Q02750 393 aaPredicted RBP23.47■■□□□ 1.35
COL7A1-209ENST00000474432 NBPF9Q3BBW0 867 aa23.47■■□□□ 1.35
COL7A1-209ENST00000474432 ALDH1L2Q3SY69 923 aa23.47■■□□□ 1.35
COL7A1-209ENST00000474432 TTLL5Q6EMB2 1281 aa23.47■■□□□ 1.35
COL7A1-209ENST00000474432 TNS4Q8IZW8 715 aa23.47■■□□□ 1.35
COL7A1-209ENST00000474432 ANKRD44Q8N8A2 993 aa23.47■■□□□ 1.35
COL7A1-209ENST00000474432 PUS3Q9BZE2 481 aaKnown RBP23.47■■□□□ 1.35
COL7A1-209ENST00000474432 HSPA8P11142 646 aaKnown RBP23.46■■□□□ 1.35
COL7A1-209ENST00000474432 MAP2K2P36507 400 aa23.46■■□□□ 1.35
COL7A1-209ENST00000474432 GTF2IP78347 998 aa23.46■■□□□ 1.35
COL7A1-209ENST00000474432 SULF1Q8IWU6 871 aa23.46■■□□□ 1.35
COL7A1-209ENST00000474432 MYO3BQ8WXR4 1341 aa23.46■■□□□ 1.35
COL7A1-209ENST00000474432 AIDAQ96BJ3 306 aa23.46■■□□□ 1.35
COL7A1-209ENST00000474432 CDCA5Q96FF9 252 aa23.46■■□□□ 1.35
COL7A1-209ENST00000474432 USP44Q9H0E7 712 aa23.46■■□□□ 1.35
COL7A1-209ENST00000474432 BICC1Q9H694 974 aaKnown RBP23.46■■□□□ 1.35
COL7A1-209ENST00000474432 GBA2Q9HCG7 927 aaPredicted RBP23.46■■□□□ 1.35
COL7A1-209ENST00000474432 PRDM10Q9NQV6 1147 aa23.46■■□□□ 1.35
COL7A1-209ENST00000474432 PITPNM2Q9BZ72 1349 aa23.45■■□□□ 1.34
COL7A1-209ENST00000474432 HUNKP57058 714 aa23.45■■□□□ 1.34
COL7A1-209ENST00000474432 CERS5Q8N5B7 392 aa23.45■■□□□ 1.34
COL7A1-209ENST00000474432 FBXW7Q969H0 707 aa23.45■■□□□ 1.34
COL7A1-209ENST00000474432 ZIC5Q96T25 663 aa23.45■■□□□ 1.34
COL7A1-209ENST00000474432 SCAF8Q9UPN6 1271 aaKnown RBP23.45■■□□□ 1.34
COL7A1-209ENST00000474432 WNT10BO00744 389 aa23.44■■□□□ 1.34
COL7A1-209ENST00000474432 IL1R1P14778 569 aa23.44■■□□□ 1.34
COL7A1-209ENST00000474432 LBX1P52954 281 aa23.44■■□□□ 1.34
COL7A1-209ENST00000474432 ZBED3Q96IU2 234 aaPredicted RBP23.44■■□□□ 1.34
COL7A1-209ENST00000474432 CNNM1Q9NRU3 951 aa23.44■■□□□ 1.34
COL7A1-209ENST00000474432 RIPOR2Q9Y4F9 1068 aa23.44■■□□□ 1.34
COL7A1-209ENST00000474432 FAM155AB1AL88 458 aaPredicted RBP23.43■■□□□ 1.34
COL7A1-209ENST00000474432 PLIN1O60240 522 aa23.43■■□□□ 1.34
COL7A1-209ENST00000474432 TAF7LQ5H9L4 462 aa23.43■■□□□ 1.34
COL7A1-209ENST00000474432 KIAA0825Q8IV33 1275 aa23.43■■□□□ 1.34
COL7A1-209ENST00000474432 SMC4Q9NTJ3 1288 aa23.42■■□□□ 1.34
COL7A1-209ENST00000474432 OGFOD1Q8N543 542 aa23.41■■□□□ 1.34
COL7A1-209ENST00000474432 C2orf69Q8N8R5 385 aa23.41■■□□□ 1.34
COL7A1-209ENST00000474432 SASH1O94885 1247 aa23.4■■□□□ 1.34
COL7A1-209ENST00000474432 CT47B1P0C2W7 299 aaPredicted RBP23.4■■□□□ 1.34
COL7A1-209ENST00000474432 MMP14P50281 582 aa23.4■■□□□ 1.34
COL7A1-209ENST00000474432 BRPF1P55201 1214 aaPredicted RBP23.4■■□□□ 1.34
COL7A1-209ENST00000474432 RGMBQ6NW40 437 aa23.4■■□□□ 1.34
COL7A1-209ENST00000474432 UBE4AQ14139 1066 aa23.39■■□□□ 1.33
COL7A1-209ENST00000474432 LRRC24Q50LG9 513 aa23.39■■□□□ 1.33
COL7A1-209ENST00000474432 PRAMEF18Q5VWM3 479 aa23.39■■□□□ 1.33
COL7A1-209ENST00000474432 ZNF804AQ7Z570 1209 aa23.39■■□□□ 1.33
COL7A1-209ENST00000474432 PAPPA2Q9BXP8 1791 aa23.38■■□□□ 1.33
COL7A1-209ENST00000474432 VGLL2Q8N8G2 317 aa23.38■■□□□ 1.33
COL7A1-209ENST00000474432 TDRD7Q8NHU6 1098 aaKnown RBP23.38■■□□□ 1.33
COL7A1-209ENST00000474432 KLHDC4Q8TBB5 520 aa23.38■■□□□ 1.33
COL7A1-209ENST00000474432 FAM84BQ96KN1 310 aaPredicted RBP23.38■■□□□ 1.33
COL7A1-209ENST00000474432 NOB1Q9ULX3 412 aaKnown RBP23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms