RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 PNMA8AQ86V59 439 aaPredicted RBP23.7■■□□□ 1.38
PTCD3-210ENST00000473829 DZIP1LQ8IYY4 767 aaKnown RBP23.7■■□□□ 1.38
PTCD3-210ENST00000473829 COA1Q9GZY4 146 aa23.7■■□□□ 1.38
PTCD3-210ENST00000473829 ZNF609O15014 1411 aa23.69■■□□□ 1.38
PTCD3-210ENST00000473829 MROH5Q6ZUA9 1318 aa23.69■■□□□ 1.38
PTCD3-210ENST00000473829 C15orf52Q6ZUT6 534 aaKnown RBP23.69■■□□□ 1.38
PTCD3-210ENST00000473829 FTSJ3Q8IY81 847 aaKnown RBP23.69■■□□□ 1.38
PTCD3-210ENST00000473829 MICALL2Q8IY33 904 aa23.68■■□□□ 1.38
PTCD3-210ENST00000473829 VGLL2Q8N8G2 317 aa23.68■■□□□ 1.38
PTCD3-210ENST00000473829 DPF2Q92785 391 aa23.68■■□□□ 1.38
PTCD3-210ENST00000473829 ADARB2Q9NS39 739 aaKnown RBP23.68■■□□□ 1.38
PTCD3-210ENST00000473829 CNOT7Q9UIV1 285 aaKnown RBP23.68■■□□□ 1.38
PTCD3-210ENST00000473829 RCAN3Q9UKA8 241 aa23.68■■□□□ 1.38
PTCD3-210ENST00000473829 METTL24Q5JXM2 366 aa23.67■■□□□ 1.38
PTCD3-210ENST00000473829 USP50Q70EL3 339 aaPredicted RBP23.67■■□□□ 1.38
PTCD3-210ENST00000473829 TRPM4Q8TD43 1214 aa23.67■■□□□ 1.38
PTCD3-210ENST00000473829 HDAC5Q9UQL6 1122 aa23.67■■□□□ 1.38
PTCD3-210ENST00000473829 CLEC11AQ9Y240 323 aa23.67■■□□□ 1.38
PTCD3-210ENST00000473829 USP17L3A6NCW0 530 aa23.66■■□□□ 1.38
PTCD3-210ENST00000473829 USP17L4A6NCW7 530 aa23.66■■□□□ 1.38
PTCD3-210ENST00000473829 EYA2O00167 538 aa23.66■■□□□ 1.38
PTCD3-210ENST00000473829 RPS12P25398 132 aaKnown RBP23.66■■□□□ 1.38
PTCD3-210ENST00000473829 RSBN1LQ6PCB5 846 aaPredicted RBP23.66■■□□□ 1.38
PTCD3-210ENST00000473829 USP17L1Q7RTZ2 530 aa23.66■■□□□ 1.38
PTCD3-210ENST00000473829 PANK1Q8TE04 598 aa23.66■■□□□ 1.38
PTCD3-210ENST00000473829 YTHDC1Q96MU7 727 aaKnown RBP23.66■■□□□ 1.38
PTCD3-210ENST00000473829 MXD3Q9BW11 206 aa23.66■■□□□ 1.38
PTCD3-210ENST00000473829 CD209Q9NNX6 404 aa23.66■■□□□ 1.38
PTCD3-210ENST00000473829 PA2G4Q9UQ80 394 aaKnown RBP23.66■■□□□ 1.38
PTCD3-210ENST00000473829 EGFRP00533 1210 aa23.65■■□□□ 1.38
PTCD3-210ENST00000473829 HIRAP54198 1017 aaPredicted RBP23.65■■□□□ 1.38
PTCD3-210ENST00000473829 UBE4AQ14139 1066 aa23.65■■□□□ 1.38
PTCD3-210ENST00000473829 DACT2Q5SW24 774 aa23.65■■□□□ 1.38
PTCD3-210ENST00000473829 MAP1SQ66K74 1059 aaPredicted RBP23.65■■□□□ 1.38
PTCD3-210ENST00000473829 ATG9AQ7Z3C6 839 aa23.65■■□□□ 1.38
PTCD3-210ENST00000473829 ITPRIPQ8IWB1 547 aa23.65■■□□□ 1.38
PTCD3-210ENST00000473829 GMLQ99445 158 aa23.65■■□□□ 1.38
PTCD3-210ENST00000473829 SIL1Q9H173 461 aa23.65■■□□□ 1.38
PTCD3-210ENST00000473829 GNAI2P04899 355 aa23.64■■□□□ 1.37
PTCD3-210ENST00000473829 HTRA3P83110 453 aa23.64■■□□□ 1.37
PTCD3-210ENST00000473829 MTX1Q13505 466 aa23.64■■□□□ 1.37
PTCD3-210ENST00000473829 SAMD7Q7Z3H4 446 aa23.64■■□□□ 1.37
PTCD3-210ENST00000473829 PDE8BO95263 885 aa23.63■■□□□ 1.37
PTCD3-210ENST00000473829 ITGBL1O95965 494 aaPredicted RBP23.63■■□□□ 1.37
PTCD3-210ENST00000473829 FBXW7Q969H0 707 aa23.63■■□□□ 1.37
PTCD3-210ENST00000473829 PASKQ96RG2 1323 aa23.62■■□□□ 1.37
PTCD3-210ENST00000473829 H7C1D1 291 aa23.62■■□□□ 1.37
PTCD3-210ENST00000473829 SRGAP3O43295 1099 aa23.62■■□□□ 1.37
PTCD3-210ENST00000473829 GYG1P46976 350 aa23.62■■□□□ 1.37
PTCD3-210ENST00000473829 APLP1P51693 650 aa23.62■■□□□ 1.37
PTCD3-210ENST00000473829 TBC1D10BQ4KMP7 808 aaPredicted RBP23.62■■□□□ 1.37
PTCD3-210ENST00000473829 STRIP1Q5VSL9 837 aa23.62■■□□□ 1.37
PTCD3-210ENST00000473829 ZNF804AQ7Z570 1209 aa23.62■■□□□ 1.37
PTCD3-210ENST00000473829 AGBL3Q8NEM8 1001 aa23.62■■□□□ 1.37
PTCD3-210ENST00000473829 PNMA6EA0A0J9YXQ4 647 aa23.61■■□□□ 1.37
PTCD3-210ENST00000473829 ZBTB7BO15156 539 aaPredicted RBP23.61■■□□□ 1.37
PTCD3-210ENST00000473829 CIAO1O76071 339 aa23.61■■□□□ 1.37
PTCD3-210ENST00000473829 IL1R1P14778 569 aa23.61■■□□□ 1.37
PTCD3-210ENST00000473829 GTF2IP78347 998 aa23.61■■□□□ 1.37
PTCD3-210ENST00000473829 CNTROBQ8N137 903 aa23.61■■□□□ 1.37
PTCD3-210ENST00000473829 FAM84BQ96KN1 310 aaPredicted RBP23.61■■□□□ 1.37
PTCD3-210ENST00000473829 C1orf115Q9H7X2 142 aa23.61■■□□□ 1.37
PTCD3-210ENST00000473829 COPRSQ9NQ92 184 aa23.61■■□□□ 1.37
PTCD3-210ENST00000473829 FGFR2P21802 821 aa23.6■■□□□ 1.37
PTCD3-210ENST00000473829 TTLL5Q6EMB2 1281 aa23.6■■□□□ 1.37
PTCD3-210ENST00000473829 ZNF280AP59817 542 aaPredicted RBP23.59■■□□□ 1.37
PTCD3-210ENST00000473829 FBXO3Q9UK99 471 aa23.59■■□□□ 1.37
PTCD3-210ENST00000473829 ARAP2Q8WZ64 1704 aa23.59■■□□□ 1.37
PTCD3-210ENST00000473829 FMR1Q06787 632 aaKnown RBP eCLIP23.58■■□□□ 1.37
PTCD3-210ENST00000473829 PUM3Q15397 648 aaKnown RBP23.58■■□□□ 1.37
PTCD3-210ENST00000473829 KIF4BQ2VIQ3 1234 aa23.58■■□□□ 1.37
PTCD3-210ENST00000473829 RBM26Q5T8P6 1007 aaKnown RBP23.58■■□□□ 1.37
PTCD3-210ENST00000473829 CERS5Q8N5B7 392 aa23.58■■□□□ 1.37
PTCD3-210ENST00000473829 PGAP2Q9UHJ9 254 aa23.58■■□□□ 1.37
PTCD3-210ENST00000473829 JAG2Q9Y219 1238 aa23.58■■□□□ 1.37
PTCD3-210ENST00000473829 USP17L8P0C7I0 530 aa23.57■■□□□ 1.36
PTCD3-210ENST00000473829 HIBADHP31937 336 aaKnown RBP23.57■■□□□ 1.36
PTCD3-210ENST00000473829 TDRD7Q8NHU6 1098 aaKnown RBP23.57■■□□□ 1.36
PTCD3-210ENST00000473829 MYO3BQ8WXR4 1341 aa23.57■■□□□ 1.36
PTCD3-210ENST00000473829 IL15P40933 162 aaPredicted RBP23.56■■□□□ 1.36
PTCD3-210ENST00000473829 FBXO33Q7Z6M2 555 aa23.56■■□□□ 1.36
PTCD3-210ENST00000473829 POLR2AP24928 1970 aaKnown RBP23.56■■□□□ 1.36
PTCD3-210ENST00000473829 ASTN2O75129 1339 aaPredicted RBP23.56■■□□□ 1.36
PTCD3-210ENST00000473829 TRAF5O00463 557 aa23.55■■□□□ 1.36
PTCD3-210ENST00000473829 C20orf194Q5TEA3 1177 aa23.55■■□□□ 1.36
PTCD3-210ENST00000473829 ZC3H15Q8WU90 426 aaKnown RBP23.55■■□□□ 1.36
PTCD3-210ENST00000473829 COG6Q9Y2V7 657 aa23.55■■□□□ 1.36
PTCD3-210ENST00000473829 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.55■■□□□ 1.36
PTCD3-210ENST00000473829 TRPM7Q96QT4 1865 aa23.55■■□□□ 1.36
PTCD3-210ENST00000473829 MYH13Q9UKX3 1938 aa23.55■■□□□ 1.36
PTCD3-210ENST00000473829 MS4A1P11836 297 aa23.54■■□□□ 1.36
PTCD3-210ENST00000473829 BCAMP50895 628 aa23.54■■□□□ 1.36
PTCD3-210ENST00000473829 MVPQ14764 893 aaKnown RBP23.54■■□□□ 1.36
PTCD3-210ENST00000473829 KIAA0825Q8IV33 1275 aa23.54■■□□□ 1.36
PTCD3-210ENST00000473829 LPIN2Q92539 896 aa23.54■■□□□ 1.36
PTCD3-210ENST00000473829 GLIS2Q9BZE0 524 aaPredicted RBP23.54■■□□□ 1.36
PTCD3-210ENST00000473829 MYOZ2Q9NPC6 264 aa23.54■■□□□ 1.36
PTCD3-210ENST00000473829 CEP126Q9P2H0 1117 aa23.54■■□□□ 1.36
PTCD3-210ENST00000473829 IQSEC3Q9UPP2 1182 aaPredicted RBP23.54■■□□□ 1.36
PTCD3-210ENST00000473829 FAM205AQ6ZU69 1335 aa23.54■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms